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PMC:3312845 / 686-941 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T340 252-253 -COMMA- denotes ,
T339 250-252 NN denotes SE
T338 240-249 VB denotes Following
T337 232-239 NN denotes Results
T336 221-229 NN denotes subunits
T335 215-220 NN denotes NF-κB
T334 211-214 CC denotes and
T333 205-210 NN denotes TNF-α
T332 201-204 IN denotes for
T331 193-200 NN denotes studies
T330 173-192 JJ denotes immunohistochemical
T329 169-172 CC denotes and
T328 160-168 NN denotes staining
T327 158-159 NN denotes B
T326 146-157 JJ denotes Fluoro-Jade
T325 136-145 VB denotes performed
T324 133-135 PRP denotes we
T323 131-132 -COMMA- denotes ,
T322 121-131 RB denotes Thereafter
T321 110-119 NN denotes induction
T320 107-109 NN denotes SE
T319 104-106 TO denotes to
T318 98-103 JJ denotes prior
T317 96-97 -RRB- denotes )
T316 88-96 NN denotes sTNFp55R
T315 87-88 -LRB- denotes (
T314 78-86 NN denotes receptor
T313 74-77 NN denotes p55
T312 70-73 NN denotes TNF
T311 62-69 JJ denotes soluble
T310 58-61 CC denotes and
T309 56-57 -COMMA- denotes ,
T308 49-56 NN denotes saline-
T307 44-48 IN denotes with
T306 36-43 VB denotes infused
T305 10-35 RB denotes intracerebroventricularly
T304 5-9 VB denotes were
T303 0-4 WDT denotes that
R136 T306 T304 arg2Of infused,were
R137 T306 T305 arg1Of infused,intracerebroventricularly
R138 T306 T307 arg1Of infused,with
R139 T308 T307 arg2Of saline-,with
R142 T310 T309 arg1Of and,","
R143 T314 T310 arg2Of receptor,and
R144 T314 T311 arg1Of receptor,soluble
R145 T314 T312 arg1Of receptor,TNF
R146 T314 T313 arg1Of receptor,p55
R147 T314 T315 arg1Of receptor,(
R148 T314 T318 arg1Of receptor,prior
R149 T316 T315 arg2Of sTNFp55R,(
R150 T317 T315 arg3Of ),(
R151 T318 T319 arg1Of prior,to
R152 T321 T319 arg2Of induction,to
R153 T321 T320 arg1Of induction,SE
R154 T324 T325 arg1Of we,performed
R155 T325 T322 arg1Of performed,Thereafter
R156 T325 T323 arg1Of performed,","
R157 T328 T326 arg1Of staining,Fluoro-Jade
R158 T328 T327 arg1Of staining,B
R159 T328 T329 arg1Of staining,and
R160 T329 T325 arg2Of and,performed
R161 T329 T332 arg1Of and,for
R162 T331 T329 arg2Of studies,and
R163 T331 T330 arg1Of studies,immunohistochemical
R164 T333 T334 arg1Of TNF-α,and
R165 T335 T334 arg2Of NF-κB,and
R166 T336 T332 arg2Of subunits,for
R167 T336 T333 arg1Of subunits,TNF-α
R168 T336 T335 arg1Of subunits,NF-κB
R169 T339 T338 arg2Of SE,Following

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T148 70-86 Protein denotes TNF p55 receptor
T149 89-96 Protein denotes TNFp55R
T150 205-210 Protein denotes TNF-α

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T478 74-77 http://www.uniprot.org/uniprot/P01589 denotes p55
T467 70-73 http://www.uniprot.org/uniprot/P01375 denotes TNF
T468 205-208 http://www.uniprot.org/uniprot/P01375 denotes TNF
T474 205-210 http://www.uniprot.org/uniprot/P01375 denotes TNF-α

sentences

Id Subject Object Predicate Lexical cue
T109 232-239 Sentence denotes Results
T108 121-230 Sentence denotes Thereafter, we performed Fluoro-Jade B staining and immunohistochemical studies for TNF-α and NF-κB subunits.
T8 121-230 Sentence denotes Thereafter, we performed Fluoro-Jade B staining and immunohistochemical studies for TNF-α and NF-κB subunits.
T9 232-239 Sentence denotes Results

simple1

Id Subject Object Predicate Lexical cue
T190 205-210 Protein denotes TNF-α
T189 89-96 Protein denotes TNFp55R
T188 70-86 Protein denotes TNF p55 receptor

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T912 70-86 Protein denotes TNF p55 receptor
T913 89-96 Protein denotes TNFp55R
T914 205-210 Protein denotes TNF-α

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T755 205-210 Protein denotes TNF-α
T754 89-96 Protein denotes TNFp55R
T753 70-86 Protein denotes TNF p55 receptor

DLUT931

Id Subject Object Predicate Lexical cue
T795 70-86 Protein denotes TNF p55 receptor
T796 89-96 Protein denotes TNFp55R
T797 205-210 Protein denotes TNF-α

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T979 146-157 Entity denotes Fluoro-Jade
T977 153-157 Protein denotes Jade
T971 62-97 Protein denotes soluble TNF p55 receptor (sTNFp55R)
T965 89-92 Protein denotes TNF
T942 88-96 Entity denotes sTNFp55R
T944 146-157 Entity denotes Fluoro-Jade
T950 107-109 Entity denotes SE
T954 205-210 Protein denotes TNF-α
T957 215-220 Protein denotes NF-κB
T961 250-253 Protein denotes SE,

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T625 252-253 , denotes ,
T624 250-252 NNP denotes SE
T623 240-249 VBG denotes Following
T622 232-239 NNS denotes Results
T621 229-230 . denotes .
T620 221-229 NNS denotes subunits
T619 215-220 NNP denotes NF-κB
T618 211-214 CC denotes and
T617 205-210 NNP denotes TNF-α
T616 201-204 IN denotes for
T615 193-200 NNS denotes studies
T614 173-192 JJ denotes immunohistochemical
T613 169-172 CC denotes and
T612 160-168 VBG denotes staining
T611 158-159 NNP denotes B
T610 146-157 NNP denotes Fluoro-Jade
T609 136-145 VBD denotes performed
T608 133-135 PRP denotes we
T607 131-132 , denotes ,
T606 121-131 RB denotes Thereafter
T605 119-120 . denotes .
T604 110-119 NN denotes induction
T603 107-109 VB denotes SE
T602 104-106 TO denotes to
T601 98-103 RB denotes prior
T600 96-97 -RRB- denotes )
T599 88-96 JJ denotes sTNFp55R
T598 87-88 -LRB- denotes (
T597 78-86 NN denotes receptor
T596 74-77 NN denotes p55
T595 70-73 NNP denotes TNF
T594 62-69 JJ denotes soluble
T593 58-61 CC denotes and
T592 56-57 , denotes ,
T591 55-56 : denotes -
T590 49-55 NN denotes saline
T589 44-48 IN denotes with
T588 36-43 VBN denotes infused
T587 10-35 RB denotes intracerebroventricularly
T586 5-9 VBD denotes were
T585 0-4 WDT denotes that
R391 T585 T588 nsubjpass that,infused
R392 T586 T588 auxpass were,infused
R393 T587 T588 advmod intracerebroventricularly,infused
R395 T589 T588 prep with,infused
R396 T590 T589 pobj saline,with
R397 T591 T590 punct -,saline
R398 T592 T590 punct ",",saline
R399 T593 T590 cc and,saline
R400 T594 T590 conj soluble,saline
R401 T595 T597 nmod TNF,receptor
R402 T596 T597 compound p55,receptor
R403 T597 T590 conj receptor,saline
R404 T598 T597 punct (,receptor
R405 T599 T597 appos sTNFp55R,receptor
R406 T600 T597 punct ),receptor
R407 T601 T588 advmod prior,infused
R408 T602 T601 prep to,prior
R409 T603 T604 compound SE,induction
R410 T604 T602 pobj induction,to
R412 T606 T609 advmod Thereafter,performed
R413 T607 T609 punct ",",performed
R414 T608 T609 nsubj we,performed
R415 T609 T609 ROOT performed,performed
R416 T610 T611 compound Fluoro-Jade,B
R417 T611 T609 dobj B,performed
R418 T612 T609 prep staining,performed
R419 T613 T612 cc and,staining
R420 T614 T615 amod immunohistochemical,studies
R421 T615 T612 conj studies,staining
R422 T616 T615 prep for,studies
R423 T617 T620 nmod TNF-α,subunits
R424 T618 T617 cc and,TNF-α
R425 T619 T617 conj NF-κB,TNF-α
R426 T620 T616 pobj subunits,for
R427 T621 T609 punct .,performed
R428 T622 T622 ROOT Results,Results
R430 T624 T623 pobj SE,Following

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T850 215-229 Protein denotes NF-κB subunits
T849 205-210 Protein denotes TNF-α
T847 70-86 Protein denotes TNF p55 receptor
T848 88-96 Protein denotes sTNFp55R

testone

Id Subject Object Predicate Lexical cue
T20 70-86 Protein denotes TNF p55 receptor
T21 89-96 Protein denotes TNFp55R
T22 205-210 Protein denotes TNF-α
T38 110-119 Positive_regulation denotes induction
T39 160-168 Gene_expression denotes staining
R3 T20 T38 themeOf TNF p55 receptor,induction

test3

Id Subject Object Predicate Lexical cue
T74 205-210 Protein denotes TNF-α
T73 110-119 Positive_regulation denotes induction
T72 88-96 Protein denotes sTNFp55R
T71 70-86 Protein denotes TNF p55 receptor
T52 70-86 Protein denotes TNF p55 receptor
T53 89-96 Protein denotes TNFp55R
T54 205-210 Protein denotes TNF-α
R20 T71 T73 themeOf TNF p55 receptor,induction
R21 T72 T71 equivalentTo sTNFp55R,TNF p55 receptor