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PMC:3312845 / 640-916 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T336 267-275 NN denotes subunits
T335 261-266 NN denotes NF-κB
T334 257-260 CC denotes and
T333 251-256 NN denotes TNF-α
T332 247-250 IN denotes for
T331 239-246 NN denotes studies
T330 219-238 JJ denotes immunohistochemical
T329 215-218 CC denotes and
T328 206-214 NN denotes staining
T327 204-205 NN denotes B
T326 192-203 JJ denotes Fluoro-Jade
T325 182-191 VB denotes performed
T324 179-181 PRP denotes we
T323 177-178 -COMMA- denotes ,
T322 167-177 RB denotes Thereafter
T321 156-165 NN denotes induction
T320 153-155 NN denotes SE
T319 150-152 TO denotes to
T318 144-149 JJ denotes prior
T317 142-143 -RRB- denotes )
T316 134-142 NN denotes sTNFp55R
T315 133-134 -LRB- denotes (
T314 124-132 NN denotes receptor
T313 120-123 NN denotes p55
T312 116-119 NN denotes TNF
T311 108-115 JJ denotes soluble
T310 104-107 CC denotes and
T309 102-103 -COMMA- denotes ,
T308 95-102 NN denotes saline-
T307 90-94 IN denotes with
T306 82-89 VB denotes infused
T305 56-81 RB denotes intracerebroventricularly
T304 51-55 VB denotes were
T303 46-50 WDT denotes that
T302 41-45 NN denotes rats
T301 38-40 IN denotes in
T300 26-37 NN denotes pilocarpine
T299 23-25 IN denotes by
T298 15-22 VB denotes induced
T297 11-14 VB denotes was
T296 8-10 NN denotes SE
T295 0-7 NN denotes Methods
R127 T296 T297 arg1Of SE,was
R128 T296 T298 arg2Of SE,induced
R129 T298 T297 arg2Of induced,was
R130 T300 T301 arg1Of pilocarpine,in
R131 T300 T310 arg1Of pilocarpine,and
R132 T302 T301 arg2Of rats,in
R133 T302 T303 arg1Of rats,that
R134 T302 T304 arg1Of rats,were
R135 T302 T306 arg2Of rats,infused
R136 T306 T304 arg2Of infused,were
R137 T306 T305 arg1Of infused,intracerebroventricularly
R138 T306 T307 arg1Of infused,with
R139 T308 T307 arg2Of saline-,with
R140 T310 T298 arg1Of and,induced
R141 T310 T299 arg2Of and,by
R142 T310 T309 arg1Of and,","
R143 T314 T310 arg2Of receptor,and
R144 T314 T311 arg1Of receptor,soluble
R145 T314 T312 arg1Of receptor,TNF
R146 T314 T313 arg1Of receptor,p55
R147 T314 T315 arg1Of receptor,(
R148 T314 T318 arg1Of receptor,prior
R149 T316 T315 arg2Of sTNFp55R,(
R150 T317 T315 arg3Of ),(
R151 T318 T319 arg1Of prior,to
R152 T321 T319 arg2Of induction,to
R153 T321 T320 arg1Of induction,SE
R154 T324 T325 arg1Of we,performed
R155 T325 T322 arg1Of performed,Thereafter
R156 T325 T323 arg1Of performed,","
R157 T328 T326 arg1Of staining,Fluoro-Jade
R158 T328 T327 arg1Of staining,B
R159 T328 T329 arg1Of staining,and
R160 T329 T325 arg2Of and,performed
R161 T329 T332 arg1Of and,for
R162 T331 T329 arg2Of studies,and
R163 T331 T330 arg1Of studies,immunohistochemical
R164 T333 T334 arg1Of TNF-α,and
R165 T335 T334 arg2Of NF-κB,and
R166 T336 T332 arg2Of subunits,for
R167 T336 T333 arg1Of subunits,TNF-α
R168 T336 T335 arg1Of subunits,NF-κB

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T148 116-132 Protein denotes TNF p55 receptor
T149 135-142 Protein denotes TNFp55R
T150 251-256 Protein denotes TNF-α

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T478 120-123 http://www.uniprot.org/uniprot/P01589 denotes p55
T467 116-119 http://www.uniprot.org/uniprot/P01375 denotes TNF
T468 251-254 http://www.uniprot.org/uniprot/P01375 denotes TNF
T474 251-256 http://www.uniprot.org/uniprot/P01375 denotes TNF-α

sentences

Id Subject Object Predicate Lexical cue
T108 167-276 Sentence denotes Thereafter, we performed Fluoro-Jade B staining and immunohistochemical studies for TNF-α and NF-κB subunits.
T107 8-166 Sentence denotes SE was induced by pilocarpine in rats that were intracerebroventricularly infused with saline-, and soluble TNF p55 receptor (sTNFp55R) prior to SE induction.
T106 0-7 Sentence denotes Methods
T6 0-7 Sentence denotes Methods
T7 8-166 Sentence denotes SE was induced by pilocarpine in rats that were intracerebroventricularly infused with saline-, and soluble TNF p55 receptor (sTNFp55R) prior to SE induction.
T8 167-276 Sentence denotes Thereafter, we performed Fluoro-Jade B staining and immunohistochemical studies for TNF-α and NF-κB subunits.

simple1

Id Subject Object Predicate Lexical cue
T190 251-256 Protein denotes TNF-α
T189 135-142 Protein denotes TNFp55R
T188 116-132 Protein denotes TNF p55 receptor

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T912 116-132 Protein denotes TNF p55 receptor
T913 135-142 Protein denotes TNFp55R
T914 251-256 Protein denotes TNF-α

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T755 251-256 Protein denotes TNF-α
T754 135-142 Protein denotes TNFp55R
T753 116-132 Protein denotes TNF p55 receptor

DLUT931

Id Subject Object Predicate Lexical cue
T795 116-132 Protein denotes TNF p55 receptor
T796 135-142 Protein denotes TNFp55R
T797 251-256 Protein denotes TNF-α

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T989 8-103 Positive_regulation denotes SE was induced by pilocarpine in rats that were intracerebroventricularly infused with saline-,
T988 8-103 Gene_expression denotes SE was induced by pilocarpine in rats that were intracerebroventricularly infused with saline-,
T979 192-203 Entity denotes Fluoro-Jade
T977 199-203 Protein denotes Jade
T971 108-143 Protein denotes soluble TNF p55 receptor (sTNFp55R)
T966 23-37 Entity denotes by pilocarpine
T965 135-138 Protein denotes TNF
T933 8-10 Protein denotes SE
T942 134-142 Entity denotes sTNFp55R
T944 192-203 Entity denotes Fluoro-Jade
T950 153-155 Entity denotes SE
T954 251-256 Protein denotes TNF-α
T957 261-266 Protein denotes NF-κB
R601 T966 T989 causeOf by pilocarpine,"SE was induced by pilocarpine in rats that were intracerebroventricularly infused with saline-,"
R653 T933 T988 themeOf SE,"SE was induced by pilocarpine in rats that were intracerebroventricularly infused with saline-,"
R654 T933 T989 themeOf SE,"SE was induced by pilocarpine in rats that were intracerebroventricularly infused with saline-,"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T621 275-276 . denotes .
T620 267-275 NNS denotes subunits
T619 261-266 NNP denotes NF-κB
T618 257-260 CC denotes and
T617 251-256 NNP denotes TNF-α
T616 247-250 IN denotes for
T615 239-246 NNS denotes studies
T614 219-238 JJ denotes immunohistochemical
T613 215-218 CC denotes and
T612 206-214 VBG denotes staining
T611 204-205 NNP denotes B
T610 192-203 NNP denotes Fluoro-Jade
T609 182-191 VBD denotes performed
T608 179-181 PRP denotes we
T607 177-178 , denotes ,
T606 167-177 RB denotes Thereafter
T605 165-166 . denotes .
T604 156-165 NN denotes induction
T603 153-155 VB denotes SE
T602 150-152 TO denotes to
T601 144-149 RB denotes prior
T600 142-143 -RRB- denotes )
T599 134-142 JJ denotes sTNFp55R
T598 133-134 -LRB- denotes (
T597 124-132 NN denotes receptor
T596 120-123 NN denotes p55
T595 116-119 NNP denotes TNF
T594 108-115 JJ denotes soluble
T593 104-107 CC denotes and
T592 102-103 , denotes ,
T591 101-102 : denotes -
T590 95-101 NN denotes saline
T589 90-94 IN denotes with
T588 82-89 VBN denotes infused
T587 56-81 RB denotes intracerebroventricularly
T586 51-55 VBD denotes were
T585 46-50 WDT denotes that
T584 41-45 NNS denotes rats
T583 38-40 IN denotes in
T582 26-37 NN denotes pilocarpine
T581 23-25 IN denotes by
T580 15-22 VBN denotes induced
T579 11-14 VBD denotes was
T578 8-10 NNP denotes SE
T577 0-7 NNP denotes Methods
R383 T577 T578 compound Methods,SE
R384 T578 T580 nsubjpass SE,induced
R385 T579 T580 auxpass was,induced
R386 T580 T580 ROOT induced,induced
R387 T581 T580 agent by,induced
R388 T582 T581 pobj pilocarpine,by
R389 T583 T580 prep in,induced
R390 T584 T583 pobj rats,in
R391 T585 T588 nsubjpass that,infused
R392 T586 T588 auxpass were,infused
R393 T587 T588 advmod intracerebroventricularly,infused
R394 T588 T584 relcl infused,rats
R395 T589 T588 prep with,infused
R396 T590 T589 pobj saline,with
R397 T591 T590 punct -,saline
R398 T592 T590 punct ",",saline
R399 T593 T590 cc and,saline
R400 T594 T590 conj soluble,saline
R401 T595 T597 nmod TNF,receptor
R402 T596 T597 compound p55,receptor
R403 T597 T590 conj receptor,saline
R404 T598 T597 punct (,receptor
R405 T599 T597 appos sTNFp55R,receptor
R406 T600 T597 punct ),receptor
R407 T601 T588 advmod prior,infused
R408 T602 T601 prep to,prior
R409 T603 T604 compound SE,induction
R410 T604 T602 pobj induction,to
R411 T605 T580 punct .,induced
R412 T606 T609 advmod Thereafter,performed
R413 T607 T609 punct ",",performed
R414 T608 T609 nsubj we,performed
R415 T609 T609 ROOT performed,performed
R416 T610 T611 compound Fluoro-Jade,B
R417 T611 T609 dobj B,performed
R418 T612 T609 prep staining,performed
R419 T613 T612 cc and,staining
R420 T614 T615 amod immunohistochemical,studies
R421 T615 T612 conj studies,staining
R422 T616 T615 prep for,studies
R423 T617 T620 nmod TNF-α,subunits
R424 T618 T617 cc and,TNF-α
R425 T619 T617 conj NF-κB,TNF-α
R426 T620 T616 pobj subunits,for
R427 T621 T609 punct .,performed

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T850 261-275 Protein denotes NF-κB subunits
T849 251-256 Protein denotes TNF-α
T847 116-132 Protein denotes TNF p55 receptor
T848 134-142 Protein denotes sTNFp55R

testone

Id Subject Object Predicate Lexical cue
T20 116-132 Protein denotes TNF p55 receptor
T21 135-142 Protein denotes TNFp55R
T22 251-256 Protein denotes TNF-α
T37 15-22 Positive_regulation denotes induced
T38 156-165 Positive_regulation denotes induction
T39 206-214 Gene_expression denotes staining
R3 T20 T38 themeOf TNF p55 receptor,induction

test3

Id Subject Object Predicate Lexical cue
T74 251-256 Protein denotes TNF-α
T73 156-165 Positive_regulation denotes induction
T72 134-142 Protein denotes sTNFp55R
T71 116-132 Protein denotes TNF p55 receptor
T52 116-132 Protein denotes TNF p55 receptor
T53 135-142 Protein denotes TNFp55R
T54 251-256 Protein denotes TNF-α
T70 15-22 Positive_regulation denotes induced
R19 T71 T70 causeOf TNF p55 receptor,induced
R20 T71 T73 themeOf TNF p55 receptor,induction
R21 T72 T71 equivalentTo sTNFp55R,TNF p55 receptor