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PMC:3312845 / 5383-5619 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22240205-7642742-63147411 5-7 7642742 denotes 21
22240205-10861785-63147411 5-7 10861785 denotes 21
22240205-19210118-63147411 5-7 19210118 denotes 21
22240205-20939924-63147412 165-167 20939924 denotes 20

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1882 133-135 IN denotes in
T1881 130-132 NN denotes SE
T1880 120-129 VB denotes following
T1879 106-119 NN denotes infiltrations
T1878 96-105 NN denotes leukocyte
T1877 93-95 TO denotes to
T1876 84-92 JJ denotes relevant
T1875 81-83 VB denotes is
T1874 70-80 NN denotes expression
T1873 64-69 NN denotes MIP-2
T1872 52-63 JJ denotes SE-mediated
T1871 47-51 IN denotes that
T1870 38-46 VB denotes reported
T1869 29-37 RB denotes recently
T1868 24-28 VB denotes have
T1867 21-23 PRP denotes we
T1866 19-20 -COMMA- denotes ,
T1865 13-19 RB denotes Indeed
T1864 10-11 -RRB- denotes ]
T1863 5-10 CD denotes 21-23
T1862 4-5 -LRB- denotes [
T1898 225-228 NN denotes BBB
T1897 221-224 CC denotes and
T1896 214-220 NN denotes system
T1895 208-213 NN denotes TNF-α
T1894 204-207 DT denotes the
T1893 196-203 IN denotes between
T1892 183-195 NN denotes relationship
T1891 179-182 DT denotes the
T1890 177-178 -COMMA- denotes ,
T1889 170-177 RB denotes However
T1888 167-168 -RRB- denotes ]
T1887 165-167 CD denotes 20
T1886 164-165 -LRB- denotes [
T1885 157-163 NN denotes manner
T1884 139-156 JJ denotes IL-1β-independent
T1883 136-138 DT denotes an
R1299 T1863 T1862 arg2Of 21-23,[
R1300 T1864 T1862 arg3Of ],[
R1301 T1867 T1868 arg1Of we,have
R1302 T1867 T1870 arg1Of we,reported
R1303 T1870 T1865 arg1Of reported,Indeed
R1304 T1870 T1866 arg1Of reported,","
R1305 T1870 T1868 arg2Of reported,have
R1306 T1870 T1869 arg1Of reported,recently
R1307 T1874 T1872 arg1Of expression,SE-mediated
R1308 T1874 T1873 arg1Of expression,MIP-2
R1309 T1874 T1875 arg1Of expression,is
R1310 T1874 T1876 arg1Of expression,relevant
R1311 T1875 T1870 arg2Of is,reported
R1312 T1875 T1871 arg1Of is,that
R1313 T1875 T1886 arg1Of is,[
R1314 T1876 T1875 arg2Of relevant,is
R1315 T1876 T1877 arg1Of relevant,to
R1316 T1879 T1877 arg2Of infiltrations,to
R1317 T1879 T1878 arg1Of infiltrations,leukocyte
R1318 T1879 T1880 arg1Of infiltrations,following
R1319 T1880 T1882 arg1Of following,in
R1320 T1881 T1880 arg2Of SE,following
R1321 T1885 T1882 arg2Of manner,in
R1322 T1885 T1883 arg1Of manner,an
R1323 T1885 T1884 arg1Of manner,IL-1β-independent
R1324 T1887 T1886 arg2Of 20,[
R1325 T1888 T1886 arg3Of ],[
R1326 T1892 T1891 arg1Of relationship,the
R1327 T1892 T1893 arg1Of relationship,between
R1331 T1896 T1895 arg1Of system,TNF-α
R1332 T1896 T1897 arg1Of system,and
R1333 T1897 T1893 arg2Of and,between
R1334 T1897 T1894 arg1Of and,the

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1215 208-213 Protein denotes TNF-α
T1214 139-144 Protein denotes IL-1β
T1213 64-69 Protein denotes MIP-2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1962 139-144 http://www.uniprot.org/uniprot/P01584 denotes IL-1β
T1960 64-69 http://www.uniprot.org/uniprot/P10889 denotes MIP-2
T1955 208-211 http://www.uniprot.org/uniprot/P01375 denotes TNF
T1947 208-213 http://www.uniprot.org/uniprot/P01375 denotes TNF-α

sentences

Id Subject Object Predicate Lexical cue
T1164 13-169 Sentence denotes Indeed, we have recently reported that SE-mediated MIP-2 expression is relevant to leukocyte infiltrations following SE in an IL-1β-independent manner [20].
T43 13-169 Sentence denotes Indeed, we have recently reported that SE-mediated MIP-2 expression is relevant to leukocyte infiltrations following SE in an IL-1β-independent manner [20].

simple1

Id Subject Object Predicate Lexical cue
T1269 208-213 Protein denotes TNF-α
T1268 139-144 Protein denotes IL-1β
T1267 64-69 Protein denotes MIP-2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T2858 52-63 Positive_regulation denotes SE-mediated
T2857 70-80 Gene_expression denotes expression
T2850 208-213 Protein denotes TNF-α
T2849 139-144 Protein denotes IL-1β
T2848 64-69 Protein denotes MIP-2
R2151 T2848 T2857 themeOf MIP-2,expression
R2153 T2857 T2858 themeOf expression,SE-mediated

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2692 70-80 Gene_expression denotes expression
T2691 145-156 Regulation denotes independent
T2690 52-63 Positive_regulation denotes SE-mediated
T2682 208-213 Protein denotes TNF-α
T2681 139-144 Protein denotes IL-1β
T2680 64-69 Protein denotes MIP-2
R2049 T2692 T2690 themeOf expression,SE-mediated
R2042 T2680 T2692 themeOf MIP-2,expression
R2043 T2681 T2691 themeOf IL-1β,independent

DLUT931

Id Subject Object Predicate Lexical cue
T2723 52-63 Positive_regulation denotes SE-mediated
T2722 84-92 Positive_regulation denotes relevant
T2721 70-80 Gene_expression denotes expression
T2713 208-213 Protein denotes TNF-α
T2712 139-144 Protein denotes IL-1β
T2711 64-69 Protein denotes MIP-2
R2075 T2711 T2721 themeOf MIP-2,expression
R2080 T2721 T2722 themeOf expression,relevant
R2081 T2721 T2723 themeOf expression,SE-mediated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2936 55-80 Gene_expression denotes mediated MIP-2 expression
T2933 55-80 Regulation denotes mediated MIP-2 expression
T2927 139-156 Protein denotes IL-1β-independent
T2911 130-132 Protein denotes SE
T2908 52-54 Entity denotes SE
T2873 96-105 Entity denotes leukocyte
T2872 208-213 Protein denotes TNF-α
T2861 64-69 Protein denotes MIP-2
R2144 T2861 T2936 themeOf MIP-2,mediated MIP-2 expression
R2154 T2936 T2933 themeOf mediated MIP-2 expression,mediated MIP-2 expression

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2617 225-228 NNP denotes BBB
T2616 221-224 CC denotes and
T2615 214-220 NN denotes system
T2614 208-213 JJ denotes TNF-α
T2613 204-207 DT denotes the
T2612 196-203 IN denotes between
T2611 183-195 NN denotes relationship
T2610 179-182 DT denotes the
T2609 177-178 , denotes ,
T2608 170-177 RB denotes However
T2607 168-169 . denotes .
T2606 167-168 NNP denotes ]
T2605 165-167 CD denotes 20
T2604 164-165 NNP denotes [
T2603 157-163 NN denotes manner
T2602 139-156 JJ denotes IL-1β-independent
T2601 136-138 DT denotes an
T2600 133-135 IN denotes in
T2599 130-132 NNP denotes SE
T2598 120-129 VBG denotes following
T2597 106-119 NNS denotes infiltrations
T2596 96-105 VB denotes leukocyte
T2595 93-95 TO denotes to
T2594 84-92 JJ denotes relevant
T2593 81-83 VBZ denotes is
T2592 70-80 NN denotes expression
T2591 64-69 NN denotes MIP-2
T2590 52-63 JJ denotes SE-mediated
T2589 47-51 IN denotes that
T2588 38-46 VBN denotes reported
T2587 29-37 RB denotes recently
T2586 24-28 VBP denotes have
T2585 21-23 PRP denotes we
T2584 19-20 , denotes ,
T2583 13-19 RB denotes Indeed
T2582 11-12 . denotes .
T2581 10-11 NNP denotes ]
T2580 5-10 CD denotes 21-23
T2579 4-5 NNP denotes [
R1928 T2599 T2598 dobj SE,following
R1930 T2600 T2596 prep in,leukocyte
R1933 T2601 T2603 det an,manner
R1934 T2602 T2603 amod IL-1β-independent,manner
R1935 T2603 T2600 pobj manner,in
R1937 T2604 T2606 nmod [,]
R1938 T2605 T2606 nummod 20,]
R1939 T2606 T2588 dobj ],reported
R1941 T2607 T2588 punct .,reported
R1945 T2610 T2611 det the,relationship
R1948 T2612 T2611 prep between,relationship
R1949 T2613 T2615 det the,system
R1951 T2614 T2615 compound TNF-α,system
R1952 T2615 T2612 pobj system,between
R1953 T2616 T2615 cc and,system
R2088 T2580 T2581 nummod 21-23,]
R2092 T2583 T2588 advmod Indeed,reported
R2095 T2584 T2588 punct ",",reported
R2098 T2585 T2588 nsubj we,reported
R2099 T2586 T2588 aux have,reported
R2100 T2587 T2588 advmod recently,reported
R2102 T2588 T2588 ROOT reported,reported
R2103 T2589 T2593 mark that,is
R2104 T2590 T2592 amod SE-mediated,expression
R2105 T2591 T2592 compound MIP-2,expression
R2107 T2592 T2593 nsubj expression,is
R2110 T2593 T2588 ccomp is,reported
R2113 T2594 T2593 acomp relevant,is
R2114 T2595 T2596 aux to,leukocyte
R2115 T2596 T2593 xcomp leukocyte,is
R2116 T2597 T2596 dobj infiltrations,leukocyte
R2117 T2598 T2597 acl following,infiltrations

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T2752 208-213 Protein denotes TNF-α
T2751 139-144 Protein denotes IL-1β

testone

Id Subject Object Predicate Lexical cue
T1060 145-156 Regulation denotes independent
T1059 120-129 Positive_regulation denotes following
T1058 70-80 Gene_expression denotes expression
T1057 55-63 Positive_regulation denotes mediated
T1047 208-213 Protein denotes TNF-α
T1046 139-144 Protein denotes IL-1β
T1045 64-69 Protein denotes MIP-2
R670 T1045 T1058 themeOf MIP-2,expression
R671 T1046 T1059 causeOf IL-1β,following
R672 T1046 T1060 causeOf IL-1β,independent
R673 T1057 T1060 themeOf mediated,independent
R674 T1057 T1059 themeOf mediated,following
R675 T1058 T1057 themeOf expression,mediated
R676 T1058 T1059 themeOf expression,following

test3

Id Subject Object Predicate Lexical cue
T1113 208-213 Protein denotes TNF-α
T1112 145-156 Regulation denotes independent
T1111 139-144 Protein denotes IL-1β
T1110 70-80 Gene_expression denotes expression
T1109 64-69 Protein denotes MIP-2
T1108 55-63 Positive_regulation denotes mediated
T1082 208-213 Protein denotes TNF-α
T1081 139-144 Protein denotes IL-1β
T1080 64-69 Protein denotes MIP-2
R691 T1108 T1112 themeOf mediated,independent
R692 T1109 T1110 themeOf MIP-2,expression
R693 T1110 T1108 themeOf expression,mediated