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PMC:3312845 / 4645-4823 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22240205-21631954-63147407 174-176 21631954 denotes 18

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1763 176-177 -RRB- denotes ]
T1762 171-176 CD denotes 17,18
T1761 170-171 -LRB- denotes [
T1760 167-169 NN denotes SE
T1759 157-166 VB denotes including
T1758 155-156 -COMMA- denotes ,
T1757 145-155 NN denotes conditions
T1756 126-144 JJ denotes pathophysiological
T1755 118-125 JJ denotes various
T1754 115-117 IN denotes in
T1753 109-114 NN denotes cells
T1752 97-108 JJ denotes endothelial
T1751 93-96 CC denotes and
T1750 85-92 NN denotes neurons
T1749 83-84 -COMMA- denotes ,
T1748 79-83 NN denotes glia
T1747 76-78 IN denotes in
T1746 64-75 VB denotes upregulated
T1745 56-63 RB denotes rapidly
T1744 53-55 VB denotes is
T1743 49-52 CC denotes and
T1742 43-48 NN denotes brain
T1741 36-42 JJ denotes normal
T1740 33-35 IN denotes in
T1739 26-32 NN denotes levels
T1738 22-25 JJ denotes low
T1737 19-21 IN denotes at
T1736 9-18 VB denotes expressed
T1735 6-8 VB denotes is
T1734 0-5 NN denotes TNF-α
R1169 T1734 T1735 arg1Of TNF-α,is
R1170 T1734 T1736 arg2Of TNF-α,expressed
R1171 T1734 T1744 arg1Of TNF-α,is
R1172 T1734 T1746 arg2Of TNF-α,upregulated
R1173 T1736 T1735 arg2Of expressed,is
R1174 T1736 T1737 arg1Of expressed,at
R1175 T1736 T1740 arg1Of expressed,in
R1176 T1736 T1743 arg1Of expressed,and
R1177 T1739 T1737 arg2Of levels,at
R1178 T1739 T1738 arg1Of levels,low
R1179 T1742 T1740 arg2Of brain,in
R1180 T1742 T1741 arg1Of brain,normal
R1181 T1746 T1743 arg2Of upregulated,and
R1182 T1746 T1744 arg2Of upregulated,is
R1183 T1746 T1745 arg1Of upregulated,rapidly
R1184 T1746 T1747 arg1Of upregulated,in
R1185 T1748 T1749 arg1Of glia,","
R1186 T1749 T1751 arg1Of ",",and
R1187 T1750 T1749 arg2Of neurons,","
R1188 T1751 T1747 arg2Of and,in
R1189 T1751 T1754 arg1Of and,in
R1190 T1753 T1751 arg2Of cells,and
R1191 T1753 T1752 arg1Of cells,endothelial
R1192 T1757 T1754 arg2Of conditions,in
R1193 T1757 T1755 arg1Of conditions,various
R1194 T1757 T1756 arg1Of conditions,pathophysiological
R1195 T1757 T1758 arg1Of conditions,","
R1196 T1757 T1759 arg1Of conditions,including
R1197 T1760 T1759 arg2Of SE,including
R1198 T1760 T1761 arg1Of SE,[
R1199 T1762 T1761 arg2Of "17,18",[
R1200 T1763 T1761 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1198 0-5 Protein denotes TNF-α

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1949 0-3 http://www.uniprot.org/uniprot/P01375 denotes TNF
T1943 0-5 http://www.uniprot.org/uniprot/P01375 denotes TNF-α

UBERON-AE

Id Subject Object Predicate Lexical cue
T1120 43-48 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain

GO-CC

Id Subject Object Predicate Lexical cue
T1247 109-114 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T1160 0-178 Sentence denotes TNF-α is expressed at low levels in normal brain and is rapidly upregulated in glia, neurons and endothelial cells in various pathophysiological conditions, including SE [17,18].
T39 0-178 Sentence denotes TNF-α is expressed at low levels in normal brain and is rapidly upregulated in glia, neurons and endothelial cells in various pathophysiological conditions, including SE [17,18].

simple1

Id Subject Object Predicate Lexical cue
T1252 0-5 Protein denotes TNF-α

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T2854 9-18 Gene_expression denotes expressed
T2853 64-75 Positive_regulation denotes upregulated
T2833 0-5 Protein denotes TNF-α
R2142 T2833 T2853 themeOf TNF-α,upregulated
R2143 T2833 T2854 themeOf TNF-α,expressed

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2686 64-75 Positive_regulation denotes upregulated
T2685 9-18 Gene_expression denotes expressed
T2665 0-5 Protein denotes TNF-α
R2028 T2665 T2686 themeOf TNF-α,upregulated
R2029 T2665 T2685 themeOf TNF-α,expressed

DLUT931

Id Subject Object Predicate Lexical cue
T2717 64-75 Positive_regulation denotes upregulated
T2716 9-18 Gene_expression denotes expressed
T2696 0-5 Protein denotes TNF-α
R2062 T2696 T2716 themeOf TNF-α,expressed
R2063 T2696 T2717 themeOf TNF-α,upregulated
R2077 T2716 T2717 themeOf expressed,upregulated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2916 167-169 Entity denotes SE
T2906 97-114 Entity denotes endothelial cells
T2879 0-5 Protein denotes TNF-α
T2868 85-92 Entity denotes neurons

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2478 177-178 . denotes .
T2477 176-177 NNP denotes ]
T2476 171-176 CD denotes 17,18
T2475 170-171 NNP denotes [
T2474 167-169 NNP denotes SE
T2473 157-166 VBG denotes including
T2472 155-156 , denotes ,
T2471 145-155 NNS denotes conditions
T2470 126-144 JJ denotes pathophysiological
T2469 118-125 JJ denotes various
T2468 115-117 IN denotes in
T2467 109-114 NNS denotes cells
T2466 97-108 JJ denotes endothelial
T2465 93-96 CC denotes and
T2464 85-92 NNS denotes neurons
T2463 83-84 , denotes ,
T2462 79-83 NN denotes glia
T2461 76-78 IN denotes in
T2460 64-75 VBN denotes upregulated
T2459 56-63 RB denotes rapidly
T2458 53-55 VBZ denotes is
T2457 49-52 CC denotes and
T2456 43-48 NN denotes brain
T2455 36-42 JJ denotes normal
T2454 33-35 IN denotes in
T2453 26-32 NNS denotes levels
T2452 22-25 JJ denotes low
T2451 19-21 IN denotes at
T2450 9-18 VBN denotes expressed
T2449 6-8 VBZ denotes is
T2448 0-5 NN denotes TNF-α
R1855 T2448 T2450 nsubjpass TNF-α,expressed
R1857 T2449 T2450 auxpass is,expressed
R1858 T2450 T2450 ROOT expressed,expressed
R1860 T2451 T2450 prep at,expressed
R1861 T2452 T2453 amod low,levels
R1862 T2453 T2451 pobj levels,at
R1864 T2454 T2453 prep in,levels
R1865 T2455 T2456 amod normal,brain
R1867 T2456 T2454 pobj brain,in
R1868 T2457 T2450 cc and,expressed
R1869 T2458 T2460 auxpass is,upregulated
R1870 T2459 T2460 advmod rapidly,upregulated
R1871 T2460 T2450 conj upregulated,expressed
R1872 T2461 T2460 prep in,upregulated
R1873 T2462 T2461 pobj glia,in
R1875 T2463 T2462 punct ",",glia
R1876 T2464 T2462 conj neurons,glia
R1877 T2465 T2464 cc and,neurons
R1879 T2466 T2467 amod endothelial,cells
R1880 T2467 T2464 conj cells,neurons
R1881 T2468 T2467 prep in,cells
R1883 T2469 T2471 amod various,conditions
R1884 T2470 T2471 amod pathophysiological,conditions
R1885 T2471 T2468 pobj conditions,in
R1886 T2472 T2471 punct ",",conditions
R1888 T2473 T2471 prep including,conditions
R1889 T2474 T2477 det SE,]
R1890 T2475 T2477 nmod [,]
R1892 T2476 T2477 nummod "17,18",]
R1893 T2477 T2473 pobj ],including
R1894 T2478 T2450 punct .,expressed

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T2733 64-75 Positive_regulation denotes upregulated
T2732 64-75 Positive_regulation denotes upregulated
T2731 9-18 Gene_expression denotes expressed
T2730 0-5 Protein denotes TNF-α
R2096 T2730 T2731 themeOf TNF-α,expressed
R2097 T2730 T2732 themeOf TNF-α,upregulated
R2101 T2731 T2733 themeOf expressed,upregulated

testone

Id Subject Object Predicate Lexical cue
T1054 9-18 Gene_expression denotes expressed
T1030 0-5 Protein denotes TNF-α
R662 T1030 T1054 themeOf TNF-α,expressed

test3

Id Subject Object Predicate Lexical cue
T1091 64-75 Positive_regulation denotes upregulated
T1090 9-18 Gene_expression denotes expressed
T1089 0-5 Protein denotes TNF-α
T1065 0-5 Protein denotes TNF-α
R679 T1089 T1091 themeOf TNF-α,upregulated
R680 T1089 T1090 themeOf TNF-α,expressed
R681 T1090 T1091 themeOf expressed,upregulated