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PMC:3312845 / 4484-4796 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1756 287-305 JJ denotes pathophysiological
T1755 279-286 JJ denotes various
T1754 276-278 IN denotes in
T1753 270-275 NN denotes cells
T1752 258-269 JJ denotes endothelial
T1751 254-257 CC denotes and
T1750 246-253 NN denotes neurons
T1749 244-245 -COMMA- denotes ,
T1748 240-244 NN denotes glia
T1747 237-239 IN denotes in
T1746 225-236 VB denotes upregulated
T1745 217-224 RB denotes rapidly
T1744 214-216 VB denotes is
T1743 210-213 CC denotes and
T1742 204-209 NN denotes brain
T1741 197-203 JJ denotes normal
T1740 194-196 IN denotes in
T1739 187-193 NN denotes levels
T1738 183-186 JJ denotes low
T1737 180-182 IN denotes at
T1736 170-179 VB denotes expressed
T1735 167-169 VB denotes is
T1734 161-166 NN denotes TNF-α
T1733 153-159 NN denotes system
T1732 146-152 JJ denotes immune
T1731 142-145 DT denotes the
T1730 139-141 IN denotes in
T1729 133-138 NN denotes cells
T1728 131-132 NN denotes T
T1727 127-130 CC denotes and
T1726 115-126 NN denotes macrophages
T1725 105-114 VB denotes activated
T1724 102-104 IN denotes by
T1723 95-101 RB denotes mainly
T1722 86-94 VB denotes produced
T1721 83-85 VB denotes is
T1720 78-82 WDT denotes that
T1719 70-77 NN denotes protein
T1718 66-69 NN denotes kDa
T1717 63-65 CD denotes 17
T1716 61-62 DT denotes a
T1715 58-60 VB denotes is
T1714 56-57 -RRB- denotes )
T1713 51-56 NN denotes TNF-α
T1712 50-51 -LRB- denotes (
T1711 41-49 NN denotes factor-α
T1710 32-40 NN denotes necrosis
T1709 26-31 NN denotes tumor
T1708 24-25 -COMMA- denotes ,
T1707 15-24 NN denotes cytokines
T1706 9-14 IN denotes Among
T1705 0-7 NN denotes seizure
R1141 T1707 T1706 arg2Of cytokines,Among
R1142 T1711 T1709 arg1Of factor-α,tumor
R1143 T1711 T1710 arg1Of factor-α,necrosis
R1144 T1711 T1712 arg1Of factor-α,(
R1145 T1711 T1715 arg1Of factor-α,is
R1146 T1713 T1712 arg2Of TNF-α,(
R1147 T1714 T1712 arg3Of ),(
R1148 T1715 T1706 arg1Of is,Among
R1149 T1715 T1708 arg1Of is,","
R1150 T1719 T1715 arg2Of protein,is
R1151 T1719 T1716 arg1Of protein,a
R1152 T1719 T1717 arg1Of protein,17
R1153 T1719 T1718 arg1Of protein,kDa
R1154 T1719 T1720 arg1Of protein,that
R1155 T1719 T1721 arg1Of protein,is
R1156 T1719 T1722 arg2Of protein,produced
R1157 T1722 T1721 arg2Of produced,is
R1158 T1722 T1723 arg1Of produced,mainly
R1159 T1722 T1730 arg1Of produced,in
R1160 T1726 T1725 arg2Of macrophages,activated
R1161 T1726 T1727 arg1Of macrophages,and
R1162 T1727 T1722 arg1Of and,produced
R1163 T1727 T1724 arg2Of and,by
R1164 T1729 T1727 arg2Of cells,and
R1165 T1729 T1728 arg1Of cells,T
R1166 T1733 T1730 arg2Of system,in
R1167 T1733 T1731 arg1Of system,the
R1168 T1733 T1732 arg1Of system,immune
R1169 T1734 T1735 arg1Of TNF-α,is
R1170 T1734 T1736 arg2Of TNF-α,expressed
R1171 T1734 T1744 arg1Of TNF-α,is
R1172 T1734 T1746 arg2Of TNF-α,upregulated
R1173 T1736 T1735 arg2Of expressed,is
R1174 T1736 T1737 arg1Of expressed,at
R1175 T1736 T1740 arg1Of expressed,in
R1176 T1736 T1743 arg1Of expressed,and
R1177 T1739 T1737 arg2Of levels,at
R1178 T1739 T1738 arg1Of levels,low
R1179 T1742 T1740 arg2Of brain,in
R1180 T1742 T1741 arg1Of brain,normal
R1181 T1746 T1743 arg2Of upregulated,and
R1182 T1746 T1744 arg2Of upregulated,is
R1183 T1746 T1745 arg1Of upregulated,rapidly
R1184 T1746 T1747 arg1Of upregulated,in
R1185 T1748 T1749 arg1Of glia,","
R1186 T1749 T1751 arg1Of ",",and
R1187 T1750 T1749 arg2Of neurons,","
R1188 T1751 T1747 arg2Of and,in
R1189 T1751 T1754 arg1Of and,in
R1190 T1753 T1751 arg2Of cells,and
R1191 T1753 T1752 arg1Of cells,endothelial

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1197 51-56 Protein denotes TNF-α
T1198 161-166 Protein denotes TNF-α
T1196 26-49 Protein denotes tumor necrosis factor-α

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1949 161-164 http://www.uniprot.org/uniprot/P01375 denotes TNF
T1948 51-54 http://www.uniprot.org/uniprot/P01375 denotes TNF
T1943 161-166 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T1942 48-54 http://www.uniprot.org/uniprot/P01375 denotes α (TNF

UBERON-AE

Id Subject Object Predicate Lexical cue
T1139 146-159 http://purl.obolibrary.org/obo/UBERON_0002405 denotes immune system
T1120 204-209 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain

GO-BP

Id Subject Object Predicate Lexical cue
T1231 105-126 http://purl.obolibrary.org/obo/GO_0042116 denotes activated macrophages
T1230 32-40 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis
T1229 32-40 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T1228 32-40 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis
T1222 32-40 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis

GO-CC

Id Subject Object Predicate Lexical cue
T1247 270-275 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1246 133-138 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T1159 9-160 Sentence denotes Among cytokines, tumor necrosis factor-α (TNF-α) is a 17 kDa protein that is produced mainly by activated macrophages and T cells in the immune system.
T38 9-160 Sentence denotes Among cytokines, tumor necrosis factor-α (TNF-α) is a 17 kDa protein that is produced mainly by activated macrophages and T cells in the immune system.

simple1

Id Subject Object Predicate Lexical cue
T1252 161-166 Protein denotes TNF-α
T1251 51-56 Protein denotes TNF-α
T1250 26-49 Protein denotes tumor necrosis factor-α

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T2854 170-179 Gene_expression denotes expressed
T2853 225-236 Positive_regulation denotes upregulated
T2852 86-94 Gene_expression denotes produced
T2831 26-49 Protein denotes tumor necrosis factor-α
T2833 161-166 Protein denotes TNF-α
T2832 51-56 Protein denotes TNF-α
R2140 T2831 T2852 themeOf tumor necrosis factor-α,produced
R2141 T2832 T2852 themeOf TNF-α,produced
R2142 T2833 T2853 themeOf TNF-α,upregulated
R2143 T2833 T2854 themeOf TNF-α,expressed

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2686 225-236 Positive_regulation denotes upregulated
T2685 170-179 Gene_expression denotes expressed
T2684 86-94 Gene_expression denotes produced
T2665 161-166 Protein denotes TNF-α
T2664 51-56 Protein denotes TNF-α
T2663 26-49 Protein denotes tumor necrosis factor-α
R2025 T2663 T2684 themeOf tumor necrosis factor-α,produced
R2028 T2665 T2686 themeOf TNF-α,upregulated
R2029 T2665 T2685 themeOf TNF-α,expressed

DLUT931

Id Subject Object Predicate Lexical cue
T2717 225-236 Positive_regulation denotes upregulated
T2716 170-179 Gene_expression denotes expressed
T2715 86-94 Gene_expression denotes produced
T2696 161-166 Protein denotes TNF-α
T2695 51-56 Protein denotes TNF-α
T2694 26-49 Protein denotes tumor necrosis factor-α
R2059 T2694 T2715 themeOf tumor necrosis factor-α,produced
R2060 T2695 T2715 themeOf TNF-α,produced
R2062 T2696 T2716 themeOf TNF-α,expressed
R2063 T2696 T2717 themeOf TNF-α,upregulated
R2077 T2716 T2717 themeOf expressed,upregulated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2926 61-159 Entity denotes a 17 kDa protein that is produced mainly by activated macrophages and T cells in the immune system
T2919 61-159 Protein denotes a 17 kDa protein that is produced mainly by activated macrophages and T cells in the immune system
T2917 26-57 Protein denotes tumor necrosis factor-α (TNF-α)
T2906 258-275 Entity denotes endothelial cells
T2900 51-56 Protein denotes TNF-α
T2880 15-24 Protein denotes cytokines
T2879 161-166 Protein denotes TNF-α
T2877 131-159 Entity denotes T cells in the immune system
T2870 105-126 Entity denotes activated macrophages
T2868 246-253 Entity denotes neurons

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2445 146-152 JJ denotes immune
T2444 142-145 DT denotes the
T2443 139-141 IN denotes in
T2442 133-138 NNS denotes cells
T2441 131-132 NNP denotes T
T2440 127-130 CC denotes and
T2439 115-126 NNS denotes macrophages
T2438 105-114 VBN denotes activated
T2437 102-104 IN denotes by
T2436 95-101 RB denotes mainly
T2435 86-94 VBN denotes produced
T2434 83-85 VBZ denotes is
T2433 78-82 WDT denotes that
T2432 70-77 NN denotes protein
T2431 66-69 NN denotes kDa
T2430 63-65 CD denotes 17
T2429 61-62 DT denotes a
T2428 58-60 VBZ denotes is
T2427 56-57 -RRB- denotes )
T2426 51-56 NNP denotes TNF-α
T2425 50-51 -LRB- denotes (
T2424 41-49 NN denotes factor-α
T2423 32-40 NN denotes necrosis
T2422 26-31 NN denotes tumor
T2421 24-25 , denotes ,
T2420 15-24 NNS denotes cytokines
T2419 9-14 IN denotes Among
T2418 7-8 . denotes .
T2417 0-7 NN denotes seizure
T2470 287-305 JJ denotes pathophysiological
T2469 279-286 JJ denotes various
T2468 276-278 IN denotes in
T2467 270-275 NNS denotes cells
T2466 258-269 JJ denotes endothelial
T2465 254-257 CC denotes and
T2464 246-253 NNS denotes neurons
T2463 244-245 , denotes ,
T2462 240-244 NN denotes glia
T2461 237-239 IN denotes in
T2460 225-236 VBN denotes upregulated
T2459 217-224 RB denotes rapidly
T2458 214-216 VBZ denotes is
T2457 210-213 CC denotes and
T2456 204-209 NN denotes brain
T2455 197-203 JJ denotes normal
T2454 194-196 IN denotes in
T2453 187-193 NNS denotes levels
T2452 183-186 JJ denotes low
T2451 180-182 IN denotes at
T2450 170-179 VBN denotes expressed
T2449 167-169 VBZ denotes is
T2448 161-166 NN denotes TNF-α
T2447 159-160 . denotes .
T2446 153-159 NN denotes system
R1816 T2419 T2428 prep Among,is
R1818 T2420 T2419 pobj cytokines,Among
R1819 T2421 T2420 punct ",",cytokines
R1820 T2422 T2423 compound tumor,necrosis
R1821 T2423 T2424 compound necrosis,factor-α
R1822 T2424 T2420 conj factor-α,cytokines
R1823 T2425 T2426 punct (,TNF-α
R1824 T2426 T2424 appos TNF-α,factor-α
R1826 T2427 T2424 punct ),factor-α
R1827 T2428 T2428 ROOT is,is
R1828 T2429 T2432 det a,protein
R1830 T2430 T2432 nummod 17,protein
R1831 T2431 T2432 compound kDa,protein
R1832 T2432 T2428 nsubj protein,is
R1834 T2433 T2435 nsubjpass that,produced
R1835 T2434 T2435 auxpass is,produced
R1836 T2435 T2432 relcl produced,protein
R1838 T2436 T2435 advmod mainly,produced
R1839 T2437 T2435 agent by,produced
R1841 T2438 T2439 amod activated,macrophages
R1842 T2439 T2437 pobj macrophages,by
R1843 T2440 T2439 cc and,macrophages
R1845 T2441 T2442 compound T,cells
R1846 T2442 T2439 conj cells,macrophages
R1847 T2443 T2435 prep in,produced
R1850 T2444 T2446 det the,system
R1851 T2445 T2446 amod immune,system
R1852 T2446 T2443 pobj system,in
R1854 T2447 T2428 punct .,is
R1855 T2448 T2450 nsubjpass TNF-α,expressed
R1857 T2449 T2450 auxpass is,expressed
R1858 T2450 T2450 ROOT expressed,expressed
R1860 T2451 T2450 prep at,expressed
R1861 T2452 T2453 amod low,levels
R1862 T2453 T2451 pobj levels,at
R1864 T2454 T2453 prep in,levels
R1865 T2455 T2456 amod normal,brain
R1867 T2456 T2454 pobj brain,in
R1868 T2457 T2450 cc and,expressed
R1869 T2458 T2460 auxpass is,upregulated
R1870 T2459 T2460 advmod rapidly,upregulated
R1871 T2460 T2450 conj upregulated,expressed
R1872 T2461 T2460 prep in,upregulated
R1873 T2462 T2461 pobj glia,in
R1875 T2463 T2462 punct ",",glia
R1876 T2464 T2462 conj neurons,glia
R1877 T2465 T2464 cc and,neurons
R1879 T2466 T2467 amod endothelial,cells
R1880 T2467 T2464 conj cells,neurons
R1881 T2468 T2467 prep in,cells

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T2733 225-236 Positive_regulation denotes upregulated
T2732 225-236 Positive_regulation denotes upregulated
T2731 170-179 Gene_expression denotes expressed
T2730 161-166 Protein denotes TNF-α
T2729 86-94 Gene_expression denotes produced
T2728 86-94 Gene_expression denotes produced
T2727 51-56 Protein denotes TNF-α
T2726 26-49 Protein denotes tumor necrosis factor-α
R2093 T2726 T2728 themeOf tumor necrosis factor-α,produced
R2094 T2727 T2729 themeOf TNF-α,produced
R2096 T2730 T2731 themeOf TNF-α,expressed
R2097 T2730 T2732 themeOf TNF-α,upregulated
R2101 T2731 T2733 themeOf expressed,upregulated

testone

Id Subject Object Predicate Lexical cue
T1054 170-179 Gene_expression denotes expressed
T1053 86-94 Gene_expression denotes produced
T1030 161-166 Protein denotes TNF-α
T1029 51-56 Protein denotes TNF-α
T1028 26-49 Protein denotes tumor necrosis factor-α
R660 T1028 T1053 themeOf tumor necrosis factor-α,produced
R661 T1029 T1028 equivalentTo TNF-α,tumor necrosis factor-α
R662 T1030 T1054 themeOf TNF-α,expressed

test3

Id Subject Object Predicate Lexical cue
T1091 225-236 Positive_regulation denotes upregulated
T1090 170-179 Gene_expression denotes expressed
T1089 161-166 Protein denotes TNF-α
T1088 86-94 Gene_expression denotes produced
T1087 51-56 Protein denotes TNF-α
T1086 26-49 Protein denotes tumor necrosis factor-α
T1065 161-166 Protein denotes TNF-α
T1064 51-56 Protein denotes TNF-α
T1063 26-49 Protein denotes tumor necrosis factor-α
R677 T1086 T1088 themeOf tumor necrosis factor-α,produced
R678 T1087 T1086 equivalentTo TNF-α,tumor necrosis factor-α
R679 T1089 T1091 themeOf TNF-α,upregulated
R680 T1089 T1090 themeOf TNF-α,expressed
R681 T1090 T1091 themeOf expressed,upregulated