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PMC:3312845 / 32339-32533 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22240205-9405476-63147469 71-73 9405476 denotes 41

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12577 188-193 NN denotes edema
T12576 178-187 JJ denotes vasogenic
T12575 167-177 JJ denotes SE-induced
T12574 164-166 IN denotes in
T12573 159-163 NN denotes role
T12572 157-158 DT denotes a
T12571 152-156 VB denotes play
T12570 147-151 RB denotes also
T12569 143-146 MD denotes may
T12568 127-142 NN denotes phosphorylation
T12567 109-126 NN denotes p65-Ser529/Ser536
T12566 94-108 JJ denotes IL-1β-mediated
T12565 89-93 IN denotes that
T12564 82-88 JJ denotes likely
T12563 79-81 VB denotes is
T12562 76-78 PRP denotes it
T12561 74-75 -COMMA- denotes ,
T12560 73-74 -RRB- denotes ]
T12559 71-73 CD denotes 41
T12558 70-71 -LRB- denotes [
T12557 64-69 NN denotes IL-1β
T12556 60-63 CC denotes and
T12555 54-59 NN denotes TNF-α
T12554 51-53 IN denotes by
T12553 36-50 VB denotes phosphorylated
T12552 32-35 VB denotes are
T12551 21-31 NN denotes p65-Ser536
T12550 17-20 CC denotes and
T12549 6-16 NN denotes p65-Ser529
T12548 0-5 IN denotes Since
R9801 T12549 T12550 arg1Of p65-Ser529,and
R9802 T12550 T12552 arg1Of and,are
R9803 T12550 T12553 arg2Of and,phosphorylated
R9804 T12551 T12550 arg2Of p65-Ser536,and
R9805 T12553 T12548 arg2Of phosphorylated,Since
R9806 T12553 T12552 arg2Of phosphorylated,are
R9807 T12555 T12556 arg1Of TNF-α,and
R9808 T12556 T12553 arg1Of and,phosphorylated
R9809 T12556 T12554 arg2Of and,by
R9810 T12557 T12556 arg2Of IL-1β,and
R9811 T12557 T12558 arg1Of IL-1β,[
R9812 T12559 T12558 arg2Of 41,[
R9813 T12560 T12558 arg3Of ],[
R9814 T12562 T12563 arg1Of it,is
R9815 T12562 T12564 arg1Of it,likely
R9816 T12563 T12548 arg1Of is,Since
R9817 T12563 T12561 arg1Of is,","
R9818 T12564 T12563 arg2Of likely,is
R9819 T12568 T12566 arg1Of phosphorylation,IL-1β-mediated
R9820 T12568 T12567 arg1Of phosphorylation,p65-Ser529/Ser536
R9821 T12568 T12569 arg1Of phosphorylation,may
R9822 T12568 T12571 arg1Of phosphorylation,play
R9823 T12571 T12564 arg2Of play,likely
R9824 T12571 T12565 arg1Of play,that
R9825 T12571 T12569 arg2Of play,may
R9826 T12571 T12570 arg1Of play,also
R9827 T12571 T12574 arg1Of play,in
R9828 T12573 T12571 arg2Of role,play
R9829 T12573 T12572 arg1Of role,a
R9830 T12577 T12574 arg2Of edema,in
R9831 T12577 T12575 arg1Of edema,SE-induced
R9832 T12577 T12576 arg1Of edema,vasogenic

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11700 109-112 Protein denotes p65
T11699 94-99 Protein denotes IL-1β
T11698 64-69 Protein denotes IL-1β
T11697 54-59 Protein denotes TNF-α
T11696 21-24 Protein denotes p65
T11695 6-9 Protein denotes p65

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T12886 94-99 http://www.uniprot.org/uniprot/P01584 denotes IL-1β
T12885 64-69 http://www.uniprot.org/uniprot/P01584 denotes IL-1β
T12883 109-112 http://www.uniprot.org/uniprot/P21579 denotes p65
T12882 21-24 http://www.uniprot.org/uniprot/P21579 denotes p65
T12881 6-9 http://www.uniprot.org/uniprot/P21579 denotes p65
T12864 109-112 http://www.uniprot.org/uniprot/Q04206 denotes p65
T12863 21-24 http://www.uniprot.org/uniprot/Q04206 denotes p65
T12862 6-9 http://www.uniprot.org/uniprot/Q04206 denotes p65
T12843 54-59 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T12831 54-57 http://www.uniprot.org/uniprot/P01375 denotes TNF

GO-BP

Id Subject Object Predicate Lexical cue
T11725 127-142 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

sentences

Id Subject Object Predicate Lexical cue
T11651 0-194 Sentence denotes Since p65-Ser529 and p65-Ser536 are phosphorylated by TNF-α and IL-1β [41], it is likely that IL-1β-mediated p65-Ser529/Ser536 phosphorylation may also play a role in SE-induced vasogenic edema.
T236 0-194 Sentence denotes Since p65-Ser529 and p65-Ser536 are phosphorylated by TNF-α and IL-1β [41], it is likely that IL-1β-mediated p65-Ser529/Ser536 phosphorylation may also play a role in SE-induced vasogenic edema.

simple1

Id Subject Object Predicate Lexical cue
T11953 109-112 Protein denotes p65
T11952 94-99 Protein denotes IL-1β
T11951 64-69 Protein denotes IL-1β
T11950 54-59 Protein denotes TNF-α
T11949 21-24 Protein denotes p65
T11948 6-9 Protein denotes p65

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14254 100-108 Positive_regulation denotes mediated
T14253 127-142 Phosphorylation denotes phosphorylation
T14252 36-50 Phosphorylation denotes phosphorylated
T14222 109-112 Protein denotes p65
T14221 94-99 Protein denotes IL-1β
T14220 64-69 Protein denotes IL-1β
T14219 54-59 Protein denotes TNF-α
T14218 21-24 Protein denotes p65
T14217 6-9 Protein denotes p65
R11175 T14217 T14252 themeOf p65,phosphorylated
R11177 T14218 T14252 themeOf p65,phosphorylated
R11179 T14222 T14254 themeOf p65,mediated
R11180 T14222 T14253 themeOf p65,phosphorylation

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T13823 64-69 Protein denotes IL-1β
T13822 54-59 Protein denotes TNF-α
T13821 21-24 Protein denotes p65
T13820 6-9 Protein denotes p65
T13853 127-142 Phosphorylation denotes phosphorylation
T13852 100-108 Positive_regulation denotes mediated
T13851 36-50 Phosphorylation denotes phosphorylated
T13825 109-112 Protein denotes p65
T13824 94-99 Protein denotes IL-1β
R11006 T13820 T13851 themeOf p65,phosphorylated
R11011 T13821 T13851 themeOf p65,phosphorylated
R11013 T13822 T13851 themeOf TNF-α,phosphorylated
R11014 T13823 T13851 themeOf IL-1β,phosphorylated
R11017 T13824 T13852 causeOf IL-1β,mediated
R11019 T13825 T13853 themeOf p65,phosphorylation
R11043 T13853 T13852 themeOf phosphorylation,mediated

DLUT931

Id Subject Object Predicate Lexical cue
T13929 100-108 Positive_regulation denotes mediated
T13928 127-142 Phosphorylation denotes phosphorylation
T13900 109-112 Protein denotes p65
T13899 94-99 Protein denotes IL-1β
T13898 64-69 Protein denotes IL-1β
T13897 54-59 Protein denotes TNF-α
T13896 21-24 Protein denotes p65
T13895 6-9 Protein denotes p65
R11015 T13899 T13929 causeOf IL-1β,mediated
R11016 T13900 T13928 themeOf p65,phosphorylation
R11037 T13928 T13929 themeOf phosphorylation,mediated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T14324 64-75 Protein denotes IL-1β [41],
T14318 54-59 Protein denotes TNF-α
T14302 21-31 Entity denotes p65-Ser536
T14272 94-108 Protein denotes IL-1β-mediated
T14382 21-31 Protein denotes p65-Ser536
T14359 6-16 Protein denotes p65-Ser529
T14357 167-177 Entity denotes SE-induced
T14345 6-16 Entity denotes p65-Ser529

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T13533 193-194 . denotes .
T13532 188-193 NN denotes edema
T13531 178-187 JJ denotes vasogenic
T13530 167-177 JJ denotes SE-induced
T13529 164-166 IN denotes in
T13528 159-163 NN denotes role
T13527 157-158 DT denotes a
T13526 152-156 VB denotes play
T13525 147-151 RB denotes also
T13524 143-146 MD denotes may
T13523 127-142 NN denotes phosphorylation
T13522 120-126 NNP denotes Ser536
T13521 119-120 NN denotes /
T13520 109-119 JJ denotes p65-Ser529
T13519 94-108 JJ denotes IL-1β-mediated
T13518 89-93 IN denotes that
T13517 82-88 JJ denotes likely
T13516 79-81 VBZ denotes is
T13515 76-78 PRP denotes it
T13514 74-75 , denotes ,
T13513 73-74 NNP denotes ]
T13512 71-73 CD denotes 41
T13511 70-71 NNP denotes [
T13510 64-69 NNP denotes IL-1β
T13509 60-63 CC denotes and
T13508 54-59 NNP denotes TNF-α
T13507 51-53 IN denotes by
T13506 36-50 VBN denotes phosphorylated
T13505 32-35 VBP denotes are
T13504 21-31 NN denotes p65-Ser536
T13503 17-20 CC denotes and
T13502 6-16 NN denotes p65-Ser529
T13501 0-5 IN denotes Since
R10688 T13501 T13506 mark Since,phosphorylated
R10689 T13502 T13505 nsubj p65-Ser529,are
R10690 T13503 T13502 cc and,p65-Ser529
R10691 T13504 T13502 conj p65-Ser536,p65-Ser529
R10692 T13505 T13506 auxpass are,phosphorylated
R10693 T13506 T13516 advcl phosphorylated,is
R10694 T13507 T13506 agent by,phosphorylated
R10695 T13508 T13507 pobj TNF-α,by
R10696 T13509 T13508 cc and,TNF-α
R10697 T13510 T13511 compound IL-1β,[
R10698 T13511 T13508 conj [,TNF-α
R10699 T13512 T13513 nummod 41,]
R10700 T13513 T13513 ROOT ],]
R10701 T13514 T13516 punct ",",is
R10702 T13515 T13516 nsubj it,is
R10703 T13516 T13516 ROOT is,is
R10704 T13517 T13516 acomp likely,is
R10705 T13518 T13526 mark that,play
R10706 T13519 T13523 amod IL-1β-mediated,phosphorylation
R10707 T13520 T13521 amod p65-Ser529,/
R10708 T13521 T13523 compound /,phosphorylation
R10709 T13522 T13523 compound Ser536,phosphorylation
R10710 T13523 T13526 nsubj phosphorylation,play
R10711 T13524 T13526 aux may,play
R10712 T13525 T13526 advmod also,play
R10713 T13526 T13517 ccomp play,likely
R10714 T13527 T13528 det a,role
R10715 T13528 T13526 dobj role,play
R10716 T13529 T13528 prep in,role
R10717 T13530 T13532 amod SE-induced,edema
R10718 T13531 T13532 amod vasogenic,edema
R10719 T13532 T13529 pobj edema,in
R10720 T13533 T13516 punct .,is

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T14007 127-142 Phosphorylation denotes phosphorylation
T14006 36-50 Phosphorylation denotes phosphorylated
T14005 94-99 Protein denotes IL-1β
T14004 64-69 Protein denotes IL-1β
T14003 54-59 Protein denotes TNF-α
R11095 T14004 T14006 themeOf IL-1β,phosphorylated
R11100 T14005 T14007 themeOf IL-1β,phosphorylation

testone

Id Subject Object Predicate Lexical cue
T11407 64-69 Protein denotes IL-1β
T11406 54-59 Protein denotes TNF-α
T11405 21-24 Protein denotes p65
T11404 6-9 Protein denotes p65
T11461 127-142 Phosphorylation denotes phosphorylation
T11460 120-126 Entity denotes Ser536
T11459 100-108 Positive_regulation denotes mediated
T11458 36-50 Phosphorylation denotes phosphorylated
T11457 25-31 Entity denotes Ser536
T11409 109-112 Protein denotes p65
T11408 94-99 Protein denotes IL-1β
R9050 T11404 T11458 themeOf p65,phosphorylated
R9051 T11405 T11458 themeOf p65,phosphorylated
R9052 T11406 T11458 causeOf TNF-α,phosphorylated
R9053 T11407 T11458 causeOf IL-1β,phosphorylated
R9054 T11408 T11459 causeOf IL-1β,mediated
R9055 T11409 T11461 themeOf p65,phosphorylation
R9085 T11457 T11458 themeOf Ser536,phosphorylated
R9086 T11457 T11405 partOf Ser536,p65
R9087 T11457 T11404 partOf Ser536,p65
R9088 T11460 T11409 partOf Ser536,p65
R9089 T11460 T11461 themeOf Ser536,phosphorylation
R9090 T11461 T11459 themeOf phosphorylation,mediated

test3

Id Subject Object Predicate Lexical cue
T11592 127-142 Phosphorylation denotes phosphorylation
T11591 120-126 Entity denotes Ser536
T11590 109-112 Protein denotes p65
T11589 100-108 Positive_regulation denotes mediated
T11588 94-99 Protein denotes IL-1β
T11587 64-69 Protein denotes IL-1β
T11586 54-59 Protein denotes TNF-α
T11585 36-50 Phosphorylation denotes phosphorylated
T11584 25-31 Entity denotes Ser536
T11583 21-24 Protein denotes p65
T11582 6-9 Protein denotes p65
T11507 109-112 Protein denotes p65
T11506 94-99 Protein denotes IL-1β
T11505 64-69 Protein denotes IL-1β
T11504 54-59 Protein denotes TNF-α
T11503 21-24 Protein denotes p65
T11502 6-9 Protein denotes p65
R9130 T11582 T11585 themeOf p65,phosphorylated
R9131 T11584 T11583 partOf Ser536,p65
R9132 T11584 T11585 themeOf Ser536,phosphorylated
R9133 T11586 T11585 causeOf TNF-α,phosphorylated
R9134 T11587 T11585 causeOf IL-1β,phosphorylated
R9135 T11588 T11589 causeOf IL-1β,mediated
R9136 T11590 T11592 themeOf p65,phosphorylation
R9137 T11591 T11590 partOf Ser536,p65
R9138 T11591 T11592 themeOf Ser536,phosphorylation
R9139 T11592 T11589 themeOf phosphorylation,mediated