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PMC:3312845 / 31961-32216 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12530 239-241 IN denotes in
T12529 230-238 VB denotes involved
T12528 227-229 VB denotes be
T12527 223-226 MD denotes may
T12526 207-222 NN denotes phosphorylation
T12525 196-206 NN denotes p65-Ser311
T12524 192-195 CC denotes and
T12523 181-191 NN denotes p65-Ser276
T12522 172-180 VB denotes enhanced
T12521 167-171 IN denotes that
T12520 160-166 JJ denotes likely
T12519 157-159 VB denotes is
T12518 154-156 PRP denotes it
T12517 152-153 -COMMA- denotes ,
T12516 143-152 RB denotes Therefore
T12515 139-141 NN denotes SE
T12514 129-138 VB denotes following
T12513 118-128 NN denotes astrocytes
T12512 115-117 IN denotes in
T12511 89-114 NN denotes p65-Ser311phosphorylation
T12510 85-88 CC denotes and
T12509 74-84 NN denotes p65-Ser276
T12508 64-73 VB denotes inhibited
T12507 52-63 RB denotes effectively
T12506 43-51 NN denotes infusion
T12505 34-42 NN denotes sTNFp55R
T12504 32-33 -COMMA- denotes ,
T12503 21-32 RB denotes Furthermore
T12502 17-19 NN denotes SE
T12501 7-16 VB denotes following
R9754 T12502 T12501 arg2Of SE,following
R9755 T12506 T12505 arg1Of infusion,sTNFp55R
R9756 T12506 T12508 arg1Of infusion,inhibited
R9757 T12508 T12503 arg1Of inhibited,Furthermore
R9758 T12508 T12504 arg1Of inhibited,","
R9759 T12508 T12507 arg1Of inhibited,effectively
R9760 T12508 T12514 arg1Of inhibited,following
R9761 T12509 T12510 arg1Of p65-Ser276,and
R9762 T12510 T12508 arg2Of and,inhibited
R9763 T12510 T12512 arg1Of and,in
R9764 T12511 T12510 arg2Of p65-Ser311phosphorylation,and
R9765 T12513 T12512 arg2Of astrocytes,in
R9766 T12515 T12514 arg2Of SE,following
R9767 T12518 T12519 arg1Of it,is
R9768 T12518 T12520 arg1Of it,likely
R9769 T12519 T12516 arg1Of is,Therefore
R9770 T12519 T12517 arg1Of is,","
R9771 T12520 T12519 arg2Of likely,is
R9772 T12523 T12522 arg2Of p65-Ser276,enhanced
R9773 T12523 T12524 arg1Of p65-Ser276,and
R9774 T12524 T12527 arg1Of and,may
R9775 T12524 T12528 arg1Of and,be
R9776 T12524 T12529 arg2Of and,involved
R9777 T12526 T12524 arg2Of phosphorylation,and
R9778 T12526 T12525 arg1Of phosphorylation,p65-Ser311
R9779 T12529 T12520 arg2Of involved,likely
R9780 T12529 T12521 arg1Of involved,that
R9781 T12529 T12527 arg2Of involved,may
R9782 T12529 T12528 arg2Of involved,be
R9783 T12529 T12530 arg1Of involved,in

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11691 242-245 Protein denotes TNF
T11690 196-199 Protein denotes p65
T11689 181-184 Protein denotes p65
T11688 89-92 Protein denotes p65
T11687 74-77 Protein denotes p65
T11686 35-42 Protein denotes TNFp55R

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T12878 196-199 http://www.uniprot.org/uniprot/P21579 denotes p65
T12877 181-184 http://www.uniprot.org/uniprot/P21579 denotes p65
T12876 89-92 http://www.uniprot.org/uniprot/P21579 denotes p65
T12875 74-77 http://www.uniprot.org/uniprot/P21579 denotes p65
T12859 196-199 http://www.uniprot.org/uniprot/Q04206 denotes p65
T12858 181-184 http://www.uniprot.org/uniprot/Q04206 denotes p65
T12857 89-92 http://www.uniprot.org/uniprot/Q04206 denotes p65
T12856 74-77 http://www.uniprot.org/uniprot/Q04206 denotes p65
T12842 242-247 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T12830 242-245 http://www.uniprot.org/uniprot/P01375 denotes TNF

GO-BP

Id Subject Object Predicate Lexical cue
T11724 207-222 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

sentences

Id Subject Object Predicate Lexical cue
T11648 21-142 Sentence denotes Furthermore, sTNFp55R infusion effectively inhibited p65-Ser276 and p65-Ser311phosphorylation in astrocytes following SE.
T233 21-142 Sentence denotes Furthermore, sTNFp55R infusion effectively inhibited p65-Ser276 and p65-Ser311phosphorylation in astrocytes following SE.

simple1

Id Subject Object Predicate Lexical cue
T11944 242-245 Protein denotes TNF
T11943 196-199 Protein denotes p65
T11942 181-184 Protein denotes p65
T11941 89-92 Protein denotes p65
T11940 74-77 Protein denotes p65
T11939 35-42 Protein denotes TNFp55R

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14248 207-222 Phosphorylation denotes phosphorylation
T14247 172-180 Positive_regulation denotes enhanced
T14246 93-114 Phosphorylation denotes Ser311phosphorylation
T14245 64-73 Negative_regulation denotes inhibited
T14213 242-245 Protein denotes TNF
T14212 196-199 Protein denotes p65
T14211 181-184 Protein denotes p65
T14210 89-92 Protein denotes p65
T14209 74-77 Protein denotes p65
T14208 35-42 Protein denotes TNFp55R
R11166 T14209 T14245 themeOf p65,inhibited
R11167 T14210 T14246 themeOf p65,Ser311phosphorylation
R11168 T14210 T14245 themeOf p65,inhibited
R11169 T14211 T14248 themeOf p65,phosphorylation
R11170 T14211 T14247 themeOf p65,enhanced
R11171 T14212 T14248 themeOf p65,phosphorylation
R11193 T14248 T14247 themeOf phosphorylation,enhanced
R11194 T14248 T14247 themeOf phosphorylation,enhanced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T13816 242-245 Protein denotes TNF
T13815 196-199 Protein denotes p65
T13814 181-184 Protein denotes p65
T13848 207-222 Phosphorylation denotes phosphorylation
T13847 172-180 Positive_regulation denotes enhanced
T13846 93-114 Phosphorylation denotes Ser311phosphorylation
T13845 64-73 Negative_regulation denotes inhibited
T13813 89-92 Protein denotes p65
T13812 74-77 Protein denotes p65
T13811 35-42 Protein denotes TNFp55R
R10985 T13812 T13845 themeOf p65,inhibited
R10987 T13813 T13846 themeOf p65,Ser311phosphorylation
R10988 T13813 T13845 themeOf p65,inhibited
R10990 T13814 T13848 themeOf p65,phosphorylation
R10992 T13814 T13847 themeOf p65,enhanced
R10994 T13815 T13848 themeOf p65,phosphorylation
R11038 T13848 T13847 themeOf phosphorylation,enhanced
R11042 T13848 T13847 themeOf phosphorylation,enhanced

DLUT931

Id Subject Object Predicate Lexical cue
T13926 172-180 Positive_regulation denotes enhanced
T13925 230-238 Positive_regulation denotes involved
T13924 207-222 Phosphorylation denotes phosphorylation
T13923 93-114 Phosphorylation denotes Ser311phosphorylation
T13922 64-73 Negative_regulation denotes inhibited
T13891 242-245 Protein denotes TNF
T13890 196-199 Protein denotes p65
T13889 181-184 Protein denotes p65
T13888 89-92 Protein denotes p65
T13887 74-77 Protein denotes p65
T13886 35-42 Protein denotes TNFp55R
R11004 T13887 T13922 themeOf p65,inhibited
R11005 T13887 T13923 themeOf p65,Ser311phosphorylation
R11007 T13888 T13923 themeOf p65,Ser311phosphorylation
R11008 T13889 T13924 themeOf p65,phosphorylation
R11009 T13890 T13924 themeOf p65,phosphorylation
R11031 T13923 T13922 themeOf Ser311phosphorylation,inhibited
R11032 T13923 T13922 themeOf Ser311phosphorylation,inhibited
R11033 T13924 T13925 themeOf phosphorylation,involved
R11034 T13924 T13926 themeOf phosphorylation,enhanced
R11035 T13924 T13925 themeOf phosphorylation,involved
R11036 T13924 T13926 themeOf phosphorylation,enhanced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T14309 139-141 Protein denotes SE
T14304 34-51 Entity denotes sTNFp55R infusion
T14296 242-247 Protein denotes TNF-α
T14267 74-84 Protein denotes p65-Ser276
T14413 196-222 Phosphorylation denotes p65-Ser311 phosphorylation
T14399 172-191 Positive_regulation denotes enhanced p65-Ser276
T14384 74-84 Entity denotes p65-Ser276
T14380 196-206 Protein denotes p65-Ser311
T14369 196-206 Entity denotes p65-Ser311
T14364 17-19 Protein denotes SE
T14360 172-191 Protein denotes enhanced p65-Ser276
T14351 118-128 Entity denotes astrocytes
T14349 35-38 Protein denotes TNF
T14340 172-191 Entity denotes enhanced p65-Ser276
R11200 T14380 T14413 themeOf p65-Ser311,p65-Ser311 phosphorylation
R11214 T14360 T14399 themeOf enhanced p65-Ser276,enhanced p65-Ser276
R11216 T14369 T14380 partOf p65-Ser311,p65-Ser311
R11217 T14369 T14413 siteOf p65-Ser311,p65-Ser311 phosphorylation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T13481 239-241 IN denotes in
T13480 230-238 VBN denotes involved
T13479 227-229 VB denotes be
T13478 223-226 MD denotes may
T13477 207-222 NN denotes phosphorylation
T13476 196-206 NN denotes p65-Ser311
T13475 192-195 CC denotes and
T13474 181-191 NN denotes p65-Ser276
T13473 172-180 JJ denotes enhanced
T13472 167-171 IN denotes that
T13471 160-166 JJ denotes likely
T13470 157-159 VBZ denotes is
T13469 154-156 PRP denotes it
T13468 152-153 , denotes ,
T13467 143-152 RB denotes Therefore
T13466 141-142 . denotes .
T13465 139-141 NNP denotes SE
T13464 129-138 VBG denotes following
T13463 118-128 NNS denotes astrocytes
T13462 115-117 IN denotes in
T13461 89-114 NN denotes p65-Ser311phosphorylation
T13460 85-88 CC denotes and
T13459 74-84 NN denotes p65-Ser276
T13458 64-73 VBD denotes inhibited
T13457 52-63 RB denotes effectively
T13456 43-51 NN denotes infusion
T13455 34-42 JJ denotes sTNFp55R
T13454 32-33 , denotes ,
T13453 21-32 RB denotes Furthermore
T13452 19-20 . denotes .
T13451 17-19 NNP denotes SE
T13450 7-16 VBG denotes following
R10638 T13451 T13450 dobj SE,following
R10640 T13453 T13458 advmod Furthermore,inhibited
R10641 T13454 T13458 punct ",",inhibited
R10642 T13455 T13456 amod sTNFp55R,infusion
R10643 T13456 T13458 nsubj infusion,inhibited
R10644 T13457 T13458 advmod effectively,inhibited
R10645 T13458 T13458 ROOT inhibited,inhibited
R10646 T13459 T13458 dobj p65-Ser276,inhibited
R10647 T13460 T13459 cc and,p65-Ser276
R10648 T13461 T13459 conj p65-Ser311phosphorylation,p65-Ser276
R10649 T13462 T13458 prep in,inhibited
R10650 T13463 T13462 pobj astrocytes,in
R10651 T13464 T13463 prep following,astrocytes
R10652 T13465 T13464 pobj SE,following
R10653 T13466 T13458 punct .,inhibited
R10654 T13467 T13470 advmod Therefore,is
R10655 T13468 T13470 punct ",",is
R10656 T13469 T13470 nsubj it,is
R10657 T13470 T13470 ROOT is,is
R10658 T13471 T13470 acomp likely,is
R10659 T13472 T13480 mark that,involved
R10660 T13473 T13474 amod enhanced,p65-Ser276
R10661 T13474 T13480 nsubjpass p65-Ser276,involved
R10662 T13475 T13474 cc and,p65-Ser276
R10663 T13476 T13477 compound p65-Ser311,phosphorylation
R10664 T13477 T13474 conj phosphorylation,p65-Ser276
R10665 T13478 T13480 aux may,involved
R10666 T13479 T13480 auxpass be,involved
R10667 T13480 T13470 ccomp involved,is
R10668 T13481 T13480 prep in,involved

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T14001 172-180 Positive_regulation denotes enhanced
T14000 172-180 Positive_regulation denotes enhanced
T13999 172-180 Positive_regulation denotes enhanced
T13998 172-180 Positive_regulation denotes enhanced
T13997 207-222 Phosphorylation denotes phosphorylation
T13996 207-222 Phosphorylation denotes phosphorylation
T13995 207-222 Phosphorylation denotes phosphorylation
T13994 207-222 Phosphorylation denotes phosphorylation
T13993 242-247 Protein denotes TNF-α
T13992 200-206 Protein denotes Ser311
T13991 196-199 Protein denotes p65
T13990 185-191 Protein denotes Ser276
T13989 181-184 Protein denotes p65
T13988 64-73 Negative_regulation denotes inhibited
T13987 64-73 Negative_regulation denotes inhibited
T13986 89-114 Phosphorylation denotes p65-Ser311phosphorylation
T13985 89-114 Phosphorylation denotes p65-Ser311phosphorylation
T13984 64-73 Negative_regulation denotes inhibited
T13983 78-84 Protein denotes Ser276
T13982 74-77 Protein denotes p65
T13981 34-42 Protein denotes sTNFp55R
R11068 T13982 T13985 themeOf p65,p65-Ser311phosphorylation
R11069 T13983 T13984 themeOf Ser276,inhibited
R11071 T13983 T13986 themeOf Ser276,p65-Ser311phosphorylation
R11072 T13985 T13987 themeOf p65-Ser311phosphorylation,inhibited
R11074 T13986 T13988 themeOf p65-Ser311phosphorylation,inhibited
R11075 T13989 T13994 themeOf p65,phosphorylation
R11077 T13990 T13995 themeOf Ser276,phosphorylation
R11079 T13991 T13996 themeOf p65,phosphorylation
R11085 T13992 T13997 themeOf Ser311,phosphorylation
R11087 T13994 T13998 themeOf phosphorylation,enhanced
R11089 T13995 T13999 themeOf phosphorylation,enhanced
R11090 T13996 T14000 themeOf phosphorylation,enhanced
R11094 T13997 T14001 themeOf phosphorylation,enhanced

testone

Id Subject Object Predicate Lexical cue
T11400 242-245 Protein denotes TNF
T11399 196-199 Protein denotes p65
T11398 181-184 Protein denotes p65
T11397 89-92 Protein denotes p65
T11396 74-77 Protein denotes p65
T11395 35-42 Protein denotes TNFp55R
T11452 230-238 Regulation denotes involved
T11451 207-222 Phosphorylation denotes phosphorylation
T11450 200-206 Entity denotes Ser311
T11449 185-191 Entity denotes Ser276
T11448 172-180 Positive_regulation denotes enhanced
T11447 129-138 Positive_regulation denotes following
T11446 78-84 Entity denotes Ser276
T11445 64-73 Negative_regulation denotes inhibited
T11444 7-16 Positive_regulation denotes following
R9048 T11398 T11451 themeOf p65,phosphorylation
R9049 T11399 T11451 themeOf p65,phosphorylation
R9075 T11446 T11396 partOf Ser276,p65
R9076 T11449 T11398 partOf Ser276,p65
R9077 T11449 T11451 themeOf Ser276,phosphorylation
R9078 T11450 T11399 partOf Ser311,p65
R9079 T11450 T11398 partOf Ser311,p65
R9080 T11450 T11451 themeOf Ser311,phosphorylation
R9081 T11451 T11448 themeOf phosphorylation,enhanced

test3

Id Subject Object Predicate Lexical cue
T11574 242-245 Protein denotes TNF
T11573 230-238 Regulation denotes involved
T11572 207-222 Phosphorylation denotes phosphorylation
T11571 200-206 Entity denotes Ser311
T11570 196-199 Protein denotes p65
T11569 185-191 Entity denotes Ser276
T11568 181-184 Protein denotes p65
T11567 172-180 Positive_regulation denotes enhanced
T11566 129-138 Positive_regulation denotes following
T11565 93-114 Phosphorylation denotes Ser311phosphorylation
T11564 89-92 Protein denotes p65
T11563 78-84 Entity denotes Ser276
T11562 74-77 Protein denotes p65
T11561 64-73 Negative_regulation denotes inhibited
T11560 34-42 Protein denotes sTNFp55R
T11559 7-16 Positive_regulation denotes following
T11498 242-245 Protein denotes TNF
T11497 196-199 Protein denotes p65
T11496 181-184 Protein denotes p65
T11495 89-92 Protein denotes p65
T11494 74-77 Protein denotes p65
T11493 35-42 Protein denotes TNFp55R
R9111 T11560 T11561 causeOf sTNFp55R,inhibited
R9112 T11562 T11565 themeOf p65,Ser311phosphorylation
R9113 T11563 T11565 themeOf Ser276,Ser311phosphorylation
R9114 T11563 T11561 themeOf Ser276,inhibited
R9115 T11563 T11562 partOf Ser276,p65
R9116 T11564 T11565 themeOf p65,Ser311phosphorylation
R9117 T11565 T11561 themeOf Ser311phosphorylation,inhibited
R9118 T11565 T11566 themeOf Ser311phosphorylation,following
R9119 T11568 T11572 themeOf p65,phosphorylation
R9120 T11569 T11572 themeOf Ser276,phosphorylation
R9121 T11569 T11568 partOf Ser276,p65
R9122 T11570 T11572 themeOf p65,phosphorylation
R9123 T11571 T11572 themeOf Ser311,phosphorylation
R9124 T11572 T11567 themeOf phosphorylation,enhanced
R9125 T11572 T11573 causeOf phosphorylation,involved