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PMC:3312845 / 31852-31981 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12502 126-128 NN denotes SE
T12501 116-125 VB denotes following
T12500 105-115 NN denotes astrocytes
T12499 102-104 IN denotes in
T12498 93-101 VB denotes observed
T12497 89-92 VB denotes was
T12496 73-88 NN denotes phosphorylation
T12495 62-72 NN denotes p65-Ser536
T12494 58-61 CC denotes and
T12493 56-57 -COMMA- denotes ,
T12492 46-56 NN denotes p65-Ser529
T12491 44-45 -COMMA- denotes ,
T12490 34-44 NN denotes p65-Ser311
T12489 32-33 -COMMA- denotes ,
T12488 22-32 NN denotes p65-Ser276
T12487 20-21 -COMMA- denotes ,
T12486 15-20 NN denotes study
T12485 7-14 JJ denotes present
T12484 3-6 DT denotes the
T12483 0-2 IN denotes In
R9735 T12486 T12483 arg2Of study,In
R9736 T12486 T12484 arg1Of study,the
R9737 T12486 T12485 arg1Of study,present
R9738 T12488 T12489 arg1Of p65-Ser276,","
R9739 T12489 T12491 arg1Of ",",","
R9740 T12490 T12489 arg2Of p65-Ser311,","
R9741 T12491 T12494 arg1Of ",",and
R9742 T12492 T12491 arg2Of p65-Ser529,","
R9743 T12494 T12493 arg1Of and,","
R9744 T12494 T12497 arg1Of and,was
R9745 T12494 T12498 arg2Of and,observed
R9746 T12496 T12494 arg2Of phosphorylation,and
R9747 T12496 T12495 arg1Of phosphorylation,p65-Ser536
R9748 T12498 T12483 arg1Of observed,In
R9749 T12498 T12487 arg1Of observed,","
R9750 T12498 T12497 arg2Of observed,was
R9751 T12498 T12499 arg1Of observed,in
R9752 T12498 T12501 arg1Of observed,following
R9753 T12500 T12499 arg2Of astrocytes,in
R9754 T12502 T12501 arg2Of SE,following

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11685 62-65 Protein denotes p65
T11684 46-49 Protein denotes p65
T11683 34-37 Protein denotes p65
T11682 22-25 Protein denotes p65

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T12874 62-65 http://www.uniprot.org/uniprot/P21579 denotes p65
T12873 46-49 http://www.uniprot.org/uniprot/P21579 denotes p65
T12872 34-37 http://www.uniprot.org/uniprot/P21579 denotes p65
T12871 22-25 http://www.uniprot.org/uniprot/P21579 denotes p65
T12855 62-65 http://www.uniprot.org/uniprot/Q04206 denotes p65
T12854 46-49 http://www.uniprot.org/uniprot/Q04206 denotes p65
T12853 34-37 http://www.uniprot.org/uniprot/Q04206 denotes p65
T12852 22-25 http://www.uniprot.org/uniprot/Q04206 denotes p65

GO-BP

Id Subject Object Predicate Lexical cue
T11723 73-88 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

sentences

Id Subject Object Predicate Lexical cue
T11647 0-129 Sentence denotes In the present study, p65-Ser276, p65-Ser311, p65-Ser529, and p65-Ser536 phosphorylation was observed in astrocytes following SE.
T232 0-129 Sentence denotes In the present study, p65-Ser276, p65-Ser311, p65-Ser529, and p65-Ser536 phosphorylation was observed in astrocytes following SE.

simple1

Id Subject Object Predicate Lexical cue
T11938 62-65 Protein denotes p65
T11937 46-49 Protein denotes p65
T11936 34-37 Protein denotes p65
T11935 22-25 Protein denotes p65

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14244 26-32 Negative_regulation denotes Ser276
T14243 73-88 Phosphorylation denotes phosphorylation
T14207 62-65 Protein denotes p65
T14206 46-49 Protein denotes p65
T14205 34-37 Protein denotes p65
T14204 22-25 Protein denotes p65
R11160 T14204 T14244 themeOf p65,Ser276
R11161 T14204 T14243 themeOf p65,phosphorylation
R11162 T14205 T14243 themeOf p65,phosphorylation
R11163 T14206 T14243 themeOf p65,phosphorylation
R11164 T14207 T14243 themeOf p65,phosphorylation

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T13844 73-88 Phosphorylation denotes phosphorylation
T13810 62-65 Protein denotes p65
T13809 46-49 Protein denotes p65
T13808 34-37 Protein denotes p65
T13807 22-25 Protein denotes p65
R10979 T13807 T13844 themeOf p65,phosphorylation
R10980 T13808 T13844 themeOf p65,phosphorylation
R10981 T13809 T13844 themeOf p65,phosphorylation
R10983 T13810 T13844 themeOf p65,phosphorylation

DLUT931

Id Subject Object Predicate Lexical cue
T13921 73-88 Phosphorylation denotes phosphorylation
T13885 62-65 Protein denotes p65
T13884 46-49 Protein denotes p65
T13883 34-37 Protein denotes p65
T13882 22-25 Protein denotes p65
R11001 T13882 T13921 themeOf p65,phosphorylation
R11003 T13885 T13921 themeOf p65,phosphorylation

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T14321 34-37 Protein denotes p65
T14307 26-32 Entity denotes Ser276
T14294 38-44 Entity denotes Ser311
T14397 62-128 Phosphorylation denotes p65-Ser536 phosphorylation was observed in astrocytes following SE
T14391 46-49 Protein denotes p65
T14383 62-72 Entity denotes p65-Ser536
T14377 50-56 Entity denotes Ser529
T14364 126-128 Protein denotes SE
T14356 62-72 Protein denotes p65-Ser536
T14346 22-25 Protein denotes p65
T14344 105-128 Entity denotes astrocytes following SE
R11201 T14383 T14356 partOf p65-Ser536,p65-Ser536
R11202 T14383 T14397 siteOf p65-Ser536,p65-Ser536 phosphorylation was observed in astrocytes following SE
R11213 T14356 T14397 themeOf p65-Ser536,p65-Ser536 phosphorylation was observed in astrocytes following SE

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T13439 34-44 NN denotes p65-Ser311
T13438 32-33 , denotes ,
T13437 22-32 NN denotes p65-Ser276
T13436 20-21 , denotes ,
T13435 15-20 NN denotes study
T13434 7-14 JJ denotes present
T13433 3-6 DT denotes the
T13432 0-2 IN denotes In
T13452 128-129 . denotes .
T13451 126-128 NNP denotes SE
T13450 116-125 VBG denotes following
T13449 105-115 NNS denotes astrocytes
T13448 102-104 IN denotes in
T13447 93-101 VBN denotes observed
T13446 89-92 VBD denotes was
T13445 73-88 NN denotes phosphorylation
T13444 62-72 NNP denotes p65-Ser536
T13443 58-61 CC denotes and
T13442 56-57 , denotes ,
T13441 46-56 NN denotes p65-Ser529
T13440 44-45 , denotes ,
R10619 T13432 T13447 prep In,observed
R10620 T13433 T13435 det the,study
R10621 T13434 T13435 amod present,study
R10622 T13435 T13432 pobj study,In
R10623 T13436 T13447 punct ",",observed
R10624 T13437 T13447 nsubjpass p65-Ser276,observed
R10625 T13438 T13437 punct ",",p65-Ser276
R10626 T13439 T13437 conj p65-Ser311,p65-Ser276
R10627 T13440 T13439 punct ",",p65-Ser311
R10628 T13441 T13439 conj p65-Ser529,p65-Ser311
R10629 T13442 T13441 punct ",",p65-Ser529
R10630 T13443 T13441 cc and,p65-Ser529
R10631 T13444 T13445 compound p65-Ser536,phosphorylation
R10632 T13445 T13441 conj phosphorylation,p65-Ser529
R10633 T13446 T13447 auxpass was,observed
R10634 T13447 T13447 ROOT observed,observed
R10635 T13448 T13447 prep in,observed
R10636 T13449 T13448 pobj astrocytes,in
R10637 T13450 T13449 prep following,astrocytes
R10638 T13451 T13450 dobj SE,following
R10639 T13452 T13447 punct .,observed

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T13980 73-88 Phosphorylation denotes phosphorylation
T13979 73-88 Phosphorylation denotes phosphorylation
T13978 66-72 Protein denotes Ser536
T13977 62-65 Protein denotes p65
R11066 T13977 T13979 themeOf p65,phosphorylation
R11067 T13978 T13980 themeOf Ser536,phosphorylation

testone

Id Subject Object Predicate Lexical cue
T11394 62-65 Protein denotes p65
T11393 46-49 Protein denotes p65
T11392 34-37 Protein denotes p65
T11391 22-25 Protein denotes p65
T11444 116-125 Positive_regulation denotes following
T11443 73-88 Phosphorylation denotes phosphorylation
T11442 66-72 Entity denotes Ser536
T11441 26-32 Entity denotes Ser276
R9044 T11391 T11443 themeOf p65,phosphorylation
R9045 T11392 T11443 themeOf p65,phosphorylation
R9046 T11393 T11443 themeOf p65,phosphorylation
R9047 T11394 T11443 themeOf p65,phosphorylation
R9067 T11441 T11391 partOf Ser276,p65
R9068 T11441 T11443 themeOf Ser276,phosphorylation
R9069 T11442 T11392 partOf Ser536,p65
R9070 T11442 T11443 themeOf Ser536,phosphorylation
R9071 T11442 T11391 partOf Ser536,p65
R9072 T11442 T11394 partOf Ser536,p65
R9073 T11442 T11393 partOf Ser536,p65
R9074 T11443 T11444 themeOf phosphorylation,following

test3

Id Subject Object Predicate Lexical cue
T11559 116-125 Positive_regulation denotes following
T11558 73-88 Phosphorylation denotes phosphorylation
T11557 66-72 Entity denotes Ser536
T11556 62-65 Protein denotes p65
T11555 46-49 Protein denotes p65
T11554 34-37 Protein denotes p65
T11553 26-32 Entity denotes Ser276
T11552 22-25 Protein denotes p65
T11492 62-65 Protein denotes p65
T11491 46-49 Protein denotes p65
T11490 34-37 Protein denotes p65
T11489 22-25 Protein denotes p65
R9102 T11552 T11558 themeOf p65,phosphorylation
R9103 T11553 T11552 partOf Ser276,p65
R9104 T11553 T11558 themeOf Ser276,phosphorylation
R9105 T11554 T11558 themeOf p65,phosphorylation
R9106 T11555 T11558 themeOf p65,phosphorylation
R9107 T11556 T11558 themeOf p65,phosphorylation
R9108 T11557 T11558 themeOf Ser536,phosphorylation
R9109 T11557 T11556 partOf Ser536,p65
R9110 T11558 T11559 themeOf phosphorylation,following