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PMC:3312845 / 31095-31395 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22240205-20001970-63147465 60-62 20001970 denotes 39

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12412 287-299 NN denotes permeability
T12411 283-286 NN denotes BBB
T12410 271-282 VB denotes influencing
T12409 259-270 NN denotes dysfunction
T12408 241-258 JJ denotes posttranslational
T12407 237-240 PRP-DOLLAR- denotes its
T12406 234-236 CC denotes or
T12405 222-233 NN denotes degradation
T12404 215-221 NN denotes SMI-71
T12403 211-214 IN denotes via
T12402 201-210 NN denotes induction
T12401 195-200 NN denotes edema
T12400 185-194 JJ denotes vasogenic
T12399 182-184 IN denotes in
T12398 177-181 NN denotes role
T12397 167-176 JJ denotes important
T12396 164-166 DT denotes an
T12395 159-163 VB denotes play
T12394 155-158 MD denotes may
T12393 149-154 NN denotes cells
T12392 137-148 JJ denotes endothelial
T12391 134-136 IN denotes in
T12390 118-133 NN denotes phosphorylation
T12389 107-117 NN denotes p65-Thr435
T12388 92-106 JJ denotes TNF-α-mediated
T12387 87-91 IN denotes that
T12386 78-86 VB denotes indicate
T12385 69-77 NN denotes findings
T12384 65-68 PRP-DOLLAR- denotes our
T12383 63-64 -COMMA- denotes ,
T12382 62-63 -RRB- denotes ]
T12381 60-62 CD denotes 39
T12380 59-60 -LRB- denotes [
T12379 53-58 NN denotes TNF-α
T12378 50-52 IN denotes by
T12377 39-49 NN denotes p65-Thr435
T12376 36-38 IN denotes of
T12375 20-35 NN denotes phosphorylation
T12374 16-19 DT denotes the
T12373 13-15 TO denotes to
T12372 5-12 NN denotes respect
T12371 0-4 IN denotes With
R9621 T12371 T12373 arg1Of With,to
R9622 T12372 T12371 arg2Of respect,With
R9623 T12375 T12371 arg3Of phosphorylation,With
R9624 T12375 T12374 arg1Of phosphorylation,the
R9625 T12375 T12376 arg1Of phosphorylation,of
R9626 T12375 T12378 arg1Of phosphorylation,by
R9627 T12377 T12376 arg2Of p65-Thr435,of
R9628 T12379 T12378 arg2Of TNF-α,by
R9629 T12379 T12380 arg1Of TNF-α,[
R9630 T12381 T12380 arg2Of 39,[
R9631 T12382 T12380 arg3Of ],[
R9632 T12385 T12384 arg1Of findings,our
R9633 T12385 T12386 arg1Of findings,indicate
R9634 T12386 T12371 arg1Of indicate,With
R9635 T12386 T12383 arg1Of indicate,","
R9636 T12390 T12388 arg1Of phosphorylation,TNF-α-mediated
R9637 T12390 T12389 arg1Of phosphorylation,p65-Thr435
R9638 T12390 T12391 arg1Of phosphorylation,in
R9639 T12390 T12394 arg1Of phosphorylation,may
R9640 T12390 T12395 arg1Of phosphorylation,play
R9641 T12393 T12391 arg2Of cells,in
R9642 T12393 T12392 arg1Of cells,endothelial
R9643 T12395 T12386 arg2Of play,indicate
R9644 T12395 T12387 arg1Of play,that
R9645 T12395 T12394 arg2Of play,may
R9646 T12395 T12399 arg1Of play,in
R9647 T12398 T12395 arg2Of role,play
R9648 T12398 T12396 arg1Of role,an
R9649 T12398 T12397 arg1Of role,important
R9650 T12402 T12400 arg1Of induction,vasogenic
R9651 T12402 T12401 arg1Of induction,edema
R9652 T12402 T12403 arg1Of induction,via
R9653 T12402 T12406 arg1Of induction,or
R9654 T12405 T12403 arg2Of degradation,via
R9655 T12405 T12404 arg1Of degradation,SMI-71
R9656 T12406 T12399 arg2Of or,in
R9657 T12409 T12406 arg2Of dysfunction,or
R9658 T12409 T12407 arg1Of dysfunction,its
R9659 T12409 T12408 arg1Of dysfunction,posttranslational
R9660 T12409 T12410 arg1Of dysfunction,influencing
R9661 T12412 T12410 arg2Of permeability,influencing
R9662 T12412 T12411 arg1Of permeability,BBB

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11679 107-110 Protein denotes p65
T11678 92-97 Protein denotes TNF-α
T11677 53-58 Protein denotes TNF-α
T11676 39-42 Protein denotes p65

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T12870 107-110 http://www.uniprot.org/uniprot/P21579 denotes p65
T12869 39-42 http://www.uniprot.org/uniprot/P21579 denotes p65
T12851 107-110 http://www.uniprot.org/uniprot/Q04206 denotes p65
T12850 39-42 http://www.uniprot.org/uniprot/Q04206 denotes p65
T12841 92-97 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T12840 53-58 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T12829 92-95 http://www.uniprot.org/uniprot/P01375 denotes TNF
T12828 53-56 http://www.uniprot.org/uniprot/P01375 denotes TNF

GO-BP

Id Subject Object Predicate Lexical cue
T11736 222-233 http://purl.obolibrary.org/obo/GO_0009056 denotes degradation
T11722 118-133 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T11721 20-35 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T11753 149-154 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T11644 0-300 Sentence denotes With respect to the phosphorylation of p65-Thr435 by TNF-α [39], our findings indicate that TNF-α-mediated p65-Thr435 phosphorylation in endothelial cells may play an important role in vasogenic edema induction via SMI-71 degradation or its posttranslational dysfunction influencing BBB permeability.
T229 0-300 Sentence denotes With respect to the phosphorylation of p65-Thr435 by TNF-α [39], our findings indicate that TNF-α-mediated p65-Thr435 phosphorylation in endothelial cells may play an important role in vasogenic edema induction via SMI-71 degradation or its posttranslational dysfunction influencing BBB permeability.

simple1

Id Subject Object Predicate Lexical cue
T11932 107-110 Protein denotes p65
T11931 92-97 Protein denotes TNF-α
T11930 53-58 Protein denotes TNF-α
T11929 39-42 Protein denotes p65

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14242 98-106 Positive_regulation denotes mediated
T14241 118-133 Phosphorylation denotes phosphorylation
T14240 20-35 Phosphorylation denotes phosphorylation
T14201 107-110 Protein denotes p65
T14200 92-97 Protein denotes TNF-α
T14199 53-58 Protein denotes TNF-α
T14198 39-42 Protein denotes p65
R11157 T14198 T14240 themeOf p65,phosphorylation
R11158 T14201 T14242 themeOf p65,mediated
R11159 T14201 T14241 themeOf p65,phosphorylation

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T13843 98-106 Positive_regulation denotes mediated
T13842 118-133 Phosphorylation denotes phosphorylation
T13841 20-35 Phosphorylation denotes phosphorylation
T13804 107-110 Protein denotes p65
T13803 92-97 Protein denotes TNF-α
T13802 53-58 Protein denotes TNF-α
T13801 39-42 Protein denotes p65
R10976 T13802 T13841 themeOf TNF-α,phosphorylation
R10977 T13803 T13843 causeOf TNF-α,mediated
R10978 T13804 T13842 themeOf p65,phosphorylation
R11030 T13842 T13843 themeOf phosphorylation,mediated

DLUT931

Id Subject Object Predicate Lexical cue
T13919 98-106 Positive_regulation denotes mediated
T13918 118-133 Phosphorylation denotes phosphorylation
T13917 20-35 Phosphorylation denotes phosphorylation
T13879 107-110 Protein denotes p65
T13878 92-97 Protein denotes TNF-α
T13877 53-58 Protein denotes TNF-α
T13876 39-42 Protein denotes p65
R10993 T13876 T13917 themeOf p65,phosphorylation
R10995 T13877 T13917 themeOf TNF-α,phosphorylation
R10996 T13878 T13919 causeOf TNF-α,mediated
R10997 T13879 T13918 themeOf p65,phosphorylation
R11029 T13918 T13919 themeOf phosphorylation,mediated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T14300 36-49 Protein denotes of p65-Thr435
T14291 107-117 Protein denotes p65-Thr435
T14268 92-106 Protein denotes TNF-α-mediated
T14406 92-154 Regulation denotes TNF-α-mediated p65-Thr435 phosphorylation in endothelial cells
T14395 16-64 Phosphorylation denotes the phosphorylation of p65-Thr435 by TNF-α [39],
T14388 137-154 Entity denotes endothelial cells
T14371 36-49 Entity denotes of p65-Thr435
T14352 50-63 Protein denotes by TNF-α [39]
T14347 107-117 Entity denotes p65-Thr435
R11189 T14268 T14406 causeOf TNF-α-mediated,TNF-α-mediated p65-Thr435 phosphorylation in endothelial cells
R11203 T14300 T14395 themeOf of p65-Thr435,"the phosphorylation of p65-Thr435 by TNF-α [39],"
R11212 T14352 T14395 causeOf by TNF-α [39],"the phosphorylation of p65-Thr435 by TNF-α [39],"
R11218 T14371 T14300 partOf of p65-Thr435,of p65-Thr435
R11219 T14371 T14395 siteOf of p65-Thr435,"the phosphorylation of p65-Thr435 by TNF-α [39],"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T13359 299-300 . denotes .
T13358 287-299 NN denotes permeability
T13357 283-286 NNP denotes BBB
T13356 271-282 VBG denotes influencing
T13355 259-270 NN denotes dysfunction
T13354 241-258 JJ denotes posttranslational
T13353 237-240 PRP$ denotes its
T13352 234-236 CC denotes or
T13351 222-233 NN denotes degradation
T13350 215-221 NNP denotes SMI-71
T13349 211-214 IN denotes via
T13348 201-210 NN denotes induction
T13347 195-200 NN denotes edema
T13346 185-194 JJ denotes vasogenic
T13345 182-184 IN denotes in
T13344 177-181 NN denotes role
T13343 167-176 JJ denotes important
T13342 164-166 DT denotes an
T13341 159-163 VB denotes play
T13340 155-158 MD denotes may
T13339 149-154 NNS denotes cells
T13338 137-148 JJ denotes endothelial
T13337 134-136 IN denotes in
T13336 118-133 NN denotes phosphorylation
T13335 107-117 NN denotes p65-Thr435
T13334 92-106 JJ denotes TNF-α-mediated
T13333 87-91 IN denotes that
T13332 78-86 VBP denotes indicate
T13331 69-77 NNS denotes findings
T13330 65-68 PRP$ denotes our
T13329 63-64 , denotes ,
T13328 62-63 NNP denotes ]
T13327 60-62 CD denotes 39
T13326 59-60 NNP denotes [
T13325 53-58 NNP denotes TNF-α
T13324 50-52 IN denotes by
T13323 39-49 NN denotes p65-Thr435
T13322 36-38 IN denotes of
T13321 20-35 NN denotes phosphorylation
T13320 16-19 DT denotes the
T13319 13-15 TO denotes to
T13318 5-12 NN denotes respect
T13317 0-4 IN denotes With
R10504 T13317 T13332 prep With,indicate
R10505 T13318 T13317 pobj respect,With
R10506 T13319 T13318 prep to,respect
R10507 T13320 T13321 det the,phosphorylation
R10508 T13321 T13319 pobj phosphorylation,to
R10509 T13322 T13321 prep of,phosphorylation
R10510 T13323 T13322 pobj p65-Thr435,of
R10511 T13324 T13321 prep by,phosphorylation
R10512 T13325 T13326 compound TNF-α,[
R10513 T13326 T13328 nmod [,]
R10514 T13327 T13328 nummod 39,]
R10515 T13328 T13324 pobj ],by
R10516 T13329 T13332 punct ",",indicate
R10517 T13330 T13331 poss our,findings
R10518 T13331 T13332 nsubj findings,indicate
R10519 T13332 T13332 ROOT indicate,indicate
R10520 T13333 T13341 mark that,play
R10521 T13334 T13336 amod TNF-α-mediated,phosphorylation
R10522 T13335 T13336 compound p65-Thr435,phosphorylation
R10523 T13336 T13341 nsubj phosphorylation,play
R10524 T13337 T13336 prep in,phosphorylation
R10525 T13338 T13339 amod endothelial,cells
R10526 T13339 T13337 pobj cells,in
R10527 T13340 T13341 aux may,play
R10528 T13341 T13332 ccomp play,indicate
R10529 T13342 T13344 det an,role
R10530 T13343 T13344 amod important,role
R10531 T13344 T13341 dobj role,play
R10532 T13345 T13341 prep in,play
R10533 T13346 T13348 amod vasogenic,induction
R10534 T13347 T13348 compound edema,induction
R10535 T13348 T13345 pobj induction,in
R10536 T13349 T13341 prep via,play
R10537 T13350 T13351 compound SMI-71,degradation
R10538 T13351 T13349 pobj degradation,via
R10539 T13352 T13351 cc or,degradation
R10540 T13353 T13355 poss its,dysfunction
R10541 T13354 T13355 amod posttranslational,dysfunction
R10542 T13355 T13351 conj dysfunction,degradation
R10543 T13356 T13355 acl influencing,dysfunction
R10544 T13357 T13358 compound BBB,permeability
R10545 T13358 T13356 dobj permeability,influencing
R10546 T13359 T13332 punct .,indicate

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T13972 98-106 Positive_regulation denotes mediated
T13971 98-106 Positive_regulation denotes mediated
T13970 118-133 Phosphorylation denotes phosphorylation
T13969 118-133 Phosphorylation denotes phosphorylation
T13968 20-35 Phosphorylation denotes phosphorylation
T13967 20-35 Phosphorylation denotes phosphorylation
T13966 111-117 Protein denotes Thr435
T13965 107-110 Protein denotes p65
T13964 92-97 Protein denotes TNF-α
T13963 53-58 Protein denotes TNF-α
T13962 43-49 Protein denotes Thr435
T13961 39-42 Protein denotes p65
R11048 T13961 T13967 themeOf p65,phosphorylation
R11053 T13962 T13968 themeOf Thr435,phosphorylation
R11054 T13965 T13969 themeOf p65,phosphorylation
R11055 T13966 T13970 themeOf Thr435,phosphorylation
R11057 T13969 T13971 themeOf phosphorylation,mediated
R11060 T13970 T13972 themeOf phosphorylation,mediated
R11061 T13971 T13964 Cause mediated,TNF-α
R11062 T13972 T13964 Cause mediated,TNF-α

testone

Id Subject Object Predicate Lexical cue
T11388 107-110 Protein denotes p65
T11387 92-97 Protein denotes TNF-α
T11386 53-58 Protein denotes TNF-α
T11385 39-42 Protein denotes p65
T11439 222-233 Protein_catabolism denotes degradation
T11438 201-210 Positive_regulation denotes induction
T11437 118-133 Phosphorylation denotes phosphorylation
T11436 98-106 Positive_regulation denotes mediated
T11435 20-35 Phosphorylation denotes phosphorylation
R9041 T11385 T11435 themeOf p65,phosphorylation
R9042 T11387 T11436 causeOf TNF-α,mediated
R9043 T11388 T11437 themeOf p65,phosphorylation
R9066 T11437 T11436 themeOf phosphorylation,mediated

test3

Id Subject Object Predicate Lexical cue
T11548 118-133 Phosphorylation denotes phosphorylation
T11547 107-110 Protein denotes p65
T11546 98-106 Positive_regulation denotes mediated
T11545 92-97 Protein denotes TNF-α
T11544 53-58 Protein denotes TNF-α
T11543 39-42 Protein denotes p65
T11542 20-35 Phosphorylation denotes phosphorylation
T11486 107-110 Protein denotes p65
T11485 92-97 Protein denotes TNF-α
T11484 53-58 Protein denotes TNF-α
T11483 39-42 Protein denotes p65
R9096 T11543 T11542 themeOf p65,phosphorylation
R9097 T11545 T11546 causeOf TNF-α,mediated
R9098 T11547 T11548 themeOf p65,phosphorylation
R9099 T11548 T11546 themeOf phosphorylation,mediated