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PMC:3312845 / 30-389 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T204 3-12 NN denotes threonine
T205 13-16 CD denotes 435
T206 17-32 NN denotes phosphorylation
T207 33-35 IN denotes of
T208 36-39 NN denotes p65
T209 40-47 JJ denotes nuclear
T210 48-57 NN denotes factor-κB
T211 58-65 NN denotes subunit
T212 66-68 IN denotes in
T213 69-80 JJ denotes endothelial
T214 81-86 NN denotes cells
T215 87-94 VB denotes induces
T216 95-104 JJ denotes vasogenic
T217 105-110 NN denotes edema
T218 111-114 CC denotes and
T219 115-125 NN denotes neutrophil
T220 126-138 NN denotes infiltration
T221 139-141 IN denotes in
T222 142-145 DT denotes the
T223 146-149 NN denotes rat
T224 150-158 NN denotes piriform
T225 159-165 NN denotes cortex
T226 166-175 VB denotes following
T227 176-182 NN denotes status
T228 183-194 NN denotes epilepticus
T253 350-359 VB denotes elucidate
T252 347-349 TO denotes To
T251 338-345 NN denotes damages
T250 327-337 JJ denotes astroglial
T249 323-326 CC denotes and
T248 314-322 JJ denotes neuronal
T247 311-313 IN denotes by
T246 299-310 VB denotes accompanied
T245 297-298 -RRB- denotes )
T244 295-297 NN denotes PC
T243 294-295 -LRB- denotes (
T242 287-293 NN denotes cortex
T241 278-286 NN denotes piriform
T240 274-277 DT denotes the
T239 271-273 IN denotes in
T238 265-270 NN denotes edema
T237 255-264 JJ denotes vasogenic
T236 248-254 JJ denotes severe
T235 240-247 VB denotes induces
T234 238-239 -RRB- denotes )
T233 236-238 NN denotes SE
T232 235-236 -LRB- denotes (
T231 223-234 NN denotes epilepticus
T230 216-222 NN denotes Status
T229 205-215 NN denotes Background
R38 T206 T204 arg1Of phosphorylation,threonine
R39 T206 T205 arg1Of phosphorylation,435
R40 T206 T207 arg1Of phosphorylation,of
R41 T206 T212 arg1Of phosphorylation,in
R42 T206 T215 arg1Of phosphorylation,induces
R43 T211 T207 arg2Of subunit,of
R44 T211 T208 arg1Of subunit,p65
R45 T211 T209 arg1Of subunit,nuclear
R46 T211 T210 arg1Of subunit,factor-κB
R47 T214 T212 arg2Of cells,in
R48 T214 T213 arg1Of cells,endothelial
R49 T215 T221 arg1Of induces,in
R50 T217 T216 arg1Of edema,vasogenic
R51 T217 T218 arg1Of edema,and
R52 T218 T215 arg2Of and,induces
R53 T220 T218 arg2Of infiltration,and
R54 T220 T219 arg1Of infiltration,neutrophil
R55 T225 T221 arg2Of cortex,in
R56 T225 T222 arg1Of cortex,the
R57 T225 T223 arg1Of cortex,rat
R58 T225 T224 arg1Of cortex,piriform
R59 T225 T226 arg1Of cortex,following
R60 T228 T226 arg2Of epilepticus,following
R61 T228 T227 arg1Of epilepticus,status
R62 T231 T230 arg1Of epilepticus,Status
R63 T231 T232 arg1Of epilepticus,(
R64 T231 T235 arg1Of epilepticus,induces
R65 T233 T232 arg2Of SE,(
R66 T234 T232 arg3Of ),(
R67 T235 T239 arg1Of induces,in
R68 T238 T235 arg2Of edema,induces
R69 T238 T236 arg1Of edema,severe
R70 T238 T237 arg1Of edema,vasogenic
R71 T242 T239 arg2Of cortex,in
R72 T242 T240 arg1Of cortex,the
R73 T242 T241 arg1Of cortex,piriform
R74 T242 T243 arg1Of cortex,(
R75 T242 T246 arg2Of cortex,accompanied
R76 T244 T243 arg2Of PC,(
R77 T245 T243 arg3Of ),(
R78 T248 T249 arg1Of neuronal,and
R79 T250 T249 arg2Of astroglial,and
R80 T251 T246 arg1Of damages,accompanied
R81 T251 T247 arg2Of damages,by
R82 T251 T248 arg1Of damages,neuronal
R83 T251 T250 arg1Of damages,astroglial
R84 T253 T252 arg1Of elucidate,To

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T146 36-39 Protein denotes p65

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T458 36-39 http://www.uniprot.org/uniprot/Q04206 denotes p65
T462 36-39 http://www.uniprot.org/uniprot/P21579 denotes p65

UBERON-AE

Id Subject Object Predicate Lexical cue
T94 150-165 http://purl.obolibrary.org/obo/UBERON_0004725 denotes piriform cortex
T96 159-165 http://purl.obolibrary.org/obo/UBERON_0001851 denotes cortex
T95 278-293 http://purl.obolibrary.org/obo/UBERON_0004725 denotes piriform cortex
T97 287-293 http://purl.obolibrary.org/obo/UBERON_0001851 denotes cortex

GO-BP

Id Subject Object Predicate Lexical cue
T169 17-32 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T180 81-86 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T104 216-346 Sentence denotes Status epilepticus (SE) induces severe vasogenic edema in the piriform cortex (PC) accompanied by neuronal and astroglial damages.
T103 205-215 Sentence denotes Background
T2 196-204 Sentence denotes Abstract
T3 205-215 Sentence denotes Background
T4 216-346 Sentence denotes Status epilepticus (SE) induces severe vasogenic edema in the piriform cortex (PC) accompanied by neuronal and astroglial damages.

ICD10

Id Subject Object Predicate Lexical cue
T174 176-194 http://purl.bioontology.org/ontology/ICD10/G41.9 denotes status epilepticus
T176 176-194 http://purl.bioontology.org/ontology/ICD10/G41 denotes status epilepticus
T175 216-234 http://purl.bioontology.org/ontology/ICD10/G41.9 denotes Status epilepticus
T177 216-234 http://purl.bioontology.org/ontology/ICD10/G41 denotes Status epilepticus

simple1

Id Subject Object Predicate Lexical cue
T186 36-39 Protein denotes p65

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T910 36-39 Protein denotes p65
T925 17-32 Phosphorylation denotes phosphorylation
R646 T910 T925 themeOf p65,phosphorylation

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T766 17-32 Phosphorylation denotes phosphorylation
T751 36-39 Protein denotes p65
R622 T751 T766 themeOf p65,phosphorylation

DLUT931

Id Subject Object Predicate Lexical cue
T793 36-39 Protein denotes p65
T808 17-32 Phosphorylation denotes phosphorylation
T809 87-94 Positive_regulation denotes induces
R624 T793 T808 themeOf p65,phosphorylation
R632 T808 T809 themeOf phosphorylation,induces

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T970 295-297 Protein denotes PC
T967 236-238 Entity denotes SE
T938 3-16 Entity denotes threonine 435
T940 69-86 Entity denotes endothelial cells
T962 115-125 Entity denotes neutrophil

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T483 3-12 NN denotes threonine
T484 13-16 CD denotes 435
T485 17-32 NN denotes phosphorylation
T486 33-35 IN denotes of
T487 36-39 CD denotes p65
T488 40-47 JJ denotes nuclear
T489 48-57 JJ denotes factor-κB
T490 58-65 NN denotes subunit
T491 66-68 IN denotes in
T492 69-80 JJ denotes endothelial
T493 81-86 NNS denotes cells
T494 87-94 VBZ denotes induces
T495 95-104 JJ denotes vasogenic
T496 105-110 NN denotes edema
T497 111-114 CC denotes and
T498 115-125 NN denotes neutrophil
T499 126-138 NN denotes infiltration
T500 139-141 IN denotes in
T501 142-145 DT denotes the
T502 146-149 NN denotes rat
T503 150-158 NN denotes piriform
T504 159-165 NN denotes cortex
T505 166-175 VBG denotes following
T506 176-182 NN denotes status
T507 183-194 NN denotes epilepticus
T533 350-359 VB denotes elucidate
T532 347-349 TO denotes To
T531 345-346 . denotes .
T530 338-345 NNS denotes damages
T529 327-337 JJ denotes astroglial
T528 323-326 CC denotes and
T527 314-322 JJ denotes neuronal
T526 311-313 IN denotes by
T525 299-310 VBN denotes accompanied
T524 297-298 -RRB- denotes )
T523 295-297 NN denotes PC
T522 294-295 -LRB- denotes (
T521 287-293 NN denotes cortex
T520 278-286 NN denotes piriform
T519 274-277 DT denotes the
T518 271-273 IN denotes in
T517 265-270 NN denotes edema
T516 255-264 JJ denotes vasogenic
T515 248-254 JJ denotes severe
T514 240-247 VBZ denotes induces
T513 238-239 -RRB- denotes )
T512 236-238 FW denotes SE
T511 235-236 -LRB- denotes (
T510 223-234 NN denotes epilepticus
T509 216-222 NNP denotes Status
T508 205-215 NNP denotes Background
R289 T483 T494 nsubj threonine,induces
R290 T484 T485 nummod 435,phosphorylation
R291 T485 T483 appos phosphorylation,threonine
R292 T486 T485 prep of,phosphorylation
R293 T487 T490 nummod p65,subunit
R294 T488 T490 amod nuclear,subunit
R295 T489 T490 amod factor-κB,subunit
R296 T490 T486 pobj subunit,of
R297 T491 T485 prep in,phosphorylation
R298 T492 T493 amod endothelial,cells
R299 T493 T491 pobj cells,in
R300 T494 T494 ROOT induces,induces
R301 T495 T496 amod vasogenic,edema
R302 T496 T494 dobj edema,induces
R303 T497 T496 cc and,edema
R304 T498 T499 compound neutrophil,infiltration
R305 T499 T496 conj infiltration,edema
R306 T500 T494 prep in,induces
R307 T501 T514 det the,induces
R308 T502 T503 compound rat,piriform
R309 T503 T504 compound piriform,cortex
R310 T504 T505 advmod cortex,following
R311 T505 T507 amod following,epilepticus
R312 T506 T507 compound status,epilepticus
R313 T507 T514 nsubj epilepticus,induces
R314 T508 T509 compound Background,Status
R315 T509 T510 compound Status,epilepticus
R316 T510 T507 appos epilepticus,epilepticus
R317 T511 T512 punct (,SE
R318 T512 T510 appos SE,epilepticus
R319 T513 T510 punct ),epilepticus
R320 T514 T494 conj induces,induces
R321 T515 T517 amod severe,edema
R322 T516 T517 amod vasogenic,edema
R323 T517 T514 dobj edema,induces
R324 T518 T514 prep in,induces
R325 T519 T521 det the,cortex
R326 T520 T521 compound piriform,cortex
R327 T521 T518 pobj cortex,in
R328 T522 T521 punct (,cortex
R329 T523 T521 appos PC,cortex
R330 T524 T521 punct ),cortex
R331 T525 T514 advcl accompanied,induces
R332 T526 T525 agent by,accompanied
R333 T527 T530 amod neuronal,damages
R334 T528 T527 cc and,neuronal
R335 T529 T527 conj astroglial,neuronal
R336 T530 T526 pobj damages,by
R337 T531 T494 punct .,induces
R338 T532 T533 aux To,elucidate

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T842 36-65 Protein denotes p65 nuclear factor-κB subunit
T843 17-32 Phosphorylation denotes phosphorylation
T844 87-94 Positive_regulation denotes induces
R642 T842 T843 themeOf p65 nuclear factor-κB subunit,phosphorylation
R643 T843 T844 themeOf phosphorylation,induces

testone

Id Subject Object Predicate Lexical cue
T18 36-39 Protein denotes p65
T34 17-32 Phosphorylation denotes phosphorylation
R2 T18 T34 themeOf p65,phosphorylation

test3

Id Subject Object Predicate Lexical cue
T50 36-39 Protein denotes p65
T67 17-32 Phosphorylation denotes phosphorylation
T68 36-39 Protein denotes p65
R18 T68 T67 themeOf p65,phosphorylation