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PMC:3312845 / 29963-31395 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22240205-15653325-63147455 140-142 15653325 denotes 30
22240205-3500474-63147456 417-419 3500474 denotes 31
22240205-21029730-63147457 501-502 21029730 denotes 5
22240205-21742016-63147458 503-504 21742016 denotes 7
22240205-20886625-63147459 505-506 20886625 denotes 8
22240205-15653325-63147460 507-509 15653325 denotes 30
22240205-2783587-63147461 510-512 2783587 denotes 32
22240205-9678508-63147462 639-641 9678508 denotes 33
22240205-9225736-63147463 807-809 9225736 denotes 34
22240205-11955477-63147464 876-878 11955477 denotes 35
22240205-7649815-63147464 876-878 7649815 denotes 35
22240205-2783587-63147464 876-878 2783587 denotes 35
22240205-20001970-63147465 1192-1194 20001970 denotes 39

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12282 541-553 JJ denotes pathological
T12281 535-540 JJ denotes above
T12280 531-534 DT denotes the
T12279 528-530 IN denotes of
T12278 521-527 NN denotes phases
T12277 515-520 JJ denotes Acute
T12276 512-513 -RRB- denotes ]
T12275 501-512 CD denotes 5,7,8,30,32
T12274 500-501 -LRB- denotes [
T12273 494-499 NN denotes cells
T12272 482-493 JJ denotes endothelial
T12271 479-481 IN denotes in
T12270 474-478 VB denotes lost
T12269 471-473 VB denotes is
T12268 460-470 NN denotes expression
T12267 453-459 NN denotes SMI-71
T12266 451-452 -COMMA- denotes ,
T12265 441-451 NN denotes conditions
T12264 428-440 JJ denotes pathological
T12263 422-427 IN denotes Under
T12262 419-420 -RRB- denotes ]
T12261 417-419 CD denotes 31
T12260 416-417 -LRB- denotes [
T12259 412-415 NNP denotes BBB
T12258 408-411 NN denotes rat
T12257 405-407 IN denotes of
T12256 399-404 NN denotes cells
T12255 387-398 JJ denotes endothelial
T12254 384-386 IN denotes by
T12253 374-383 VB denotes expressed
T12252 366-373 NN denotes protein
T12251 364-365 DT denotes a
T12250 361-363 VB denotes is
T12249 359-360 -COMMA- denotes ,
T12248 352-359 NN denotes antigen
T12247 344-351 NN denotes barrier
T12246 332-343 JJ denotes endothelial
T12245 329-331 DT denotes an
T12244 327-328 -COMMA- denotes ,
T12243 321-327 NN denotes SMI-71
T12242 309-319 NN denotes expression
T12241 302-308 NN denotes SMI-71
T12240 299-301 IN denotes of
T12239 292-298 NN denotes degree
T12238 288-291 DT denotes the
T12237 285-287 TO denotes to
T12236 273-284 NN denotes correlation
T12235 265-272 JJ denotes inverse
T12234 262-264 DT denotes an
T12233 255-261 VB denotes showed
T12232 238-254 NN denotes immunoreactivity
T12231 234-237 PRP-DOLLAR- denotes its
T12230 230-233 CC denotes and
T12229 228-229 -COMMA- denotes ,
T12228 223-228 NN denotes cells
T12227 211-222 JJ denotes endothelial
T12226 208-210 IN denotes in
T12225 199-207 VB denotes detected
T12224 195-198 VB denotes was
T12223 178-194 NN denotes immunoreactivity
T12222 167-177 NN denotes p65-Thr435
T12221 165-166 -COMMA- denotes ,
T12220 160-165 NN denotes study
T12219 152-159 JJ denotes present
T12218 148-151 DT denotes the
T12217 145-147 IN denotes In
T12216 142-143 -RRB- denotes ]
T12215 140-142 CD denotes 30
T12214 139-140 -LRB- denotes [
T12213 131-138 NN denotes nucleus
T12212 127-130 DT denotes the
T12211 124-126 CC denotes or
T12210 114-123 NN denotes cytoplasm
T12209 110-113 DT denotes the
T12208 103-109 CC denotes either
T12207 100-102 IN denotes in
T12206 93-99 VB denotes occurs
T12205 77-92 NN denotes phosphorylation
T12204 73-76 NN denotes p65
T12203 69-72 CC denotes and
T12202 67-68 -COMMA- denotes ,
T12201 58-67 NN denotes potential
T12200 42-57 NN denotes transactivation
T12199 38-41 PRP-DOLLAR- denotes its
T12198 29-37 VB denotes enhances
T12197 23-28 NN denotes NF-κB
T12196 20-22 IN denotes of
T12195 4-19 NN denotes phosphorylation
T12194 0-3 NN denotes p65
T12412 1419-1431 NN denotes permeability
T12411 1415-1418 NN denotes BBB
T12410 1403-1414 VB denotes influencing
T12409 1391-1402 NN denotes dysfunction
T12408 1373-1390 JJ denotes posttranslational
T12407 1369-1372 PRP-DOLLAR- denotes its
T12406 1366-1368 CC denotes or
T12405 1354-1365 NN denotes degradation
T12404 1347-1353 NN denotes SMI-71
T12403 1343-1346 IN denotes via
T12402 1333-1342 NN denotes induction
T12401 1327-1332 NN denotes edema
T12400 1317-1326 JJ denotes vasogenic
T12399 1314-1316 IN denotes in
T12398 1309-1313 NN denotes role
T12397 1299-1308 JJ denotes important
T12396 1296-1298 DT denotes an
T12395 1291-1295 VB denotes play
T12394 1287-1290 MD denotes may
T12393 1281-1286 NN denotes cells
T12392 1269-1280 JJ denotes endothelial
T12391 1266-1268 IN denotes in
T12390 1250-1265 NN denotes phosphorylation
T12389 1239-1249 NN denotes p65-Thr435
T12388 1224-1238 JJ denotes TNF-α-mediated
T12387 1219-1223 IN denotes that
T12386 1210-1218 VB denotes indicate
T12385 1201-1209 NN denotes findings
T12384 1197-1200 PRP-DOLLAR- denotes our
T12383 1195-1196 -COMMA- denotes ,
T12382 1194-1195 -RRB- denotes ]
T12381 1192-1194 CD denotes 39
T12380 1191-1192 -LRB- denotes [
T12379 1185-1190 NN denotes TNF-α
T12378 1182-1184 IN denotes by
T12377 1171-1181 NN denotes p65-Thr435
T12376 1168-1170 IN denotes of
T12375 1152-1167 NN denotes phosphorylation
T12374 1148-1151 DT denotes the
T12373 1145-1147 TO denotes to
T12372 1137-1144 NN denotes respect
T12371 1132-1136 IN denotes With
T12370 1115-1130 NN denotes down-regulation
T12369 1108-1114 NN denotes SMI-71
T12368 1097-1107 JJ denotes SE-induced
T12367 1087-1096 VB denotes prevented
T12366 1075-1086 RB denotes effectively
T12365 1066-1074 NN denotes infusion
T12363 1055-1056 -COMMA- denotes ,
T12362 1044-1055 RB denotes Furthermore
T12361 1034-1042 VB denotes observed
T12360 1029-1033 VB denotes were
T12359 1022-1028 NN denotes damage
T12358 1013-1021 JJ denotes neuronal
T12357 1009-1012 CC denotes and
T12356 1003-1008 NN denotes edema
T12355 993-1002 JJ denotes vasogenic
T12354 988-992 WRB denotes when
T12353 985-987 NN denotes SE
T12352 979-984 IN denotes after
T12351 975-978 NN denotes day
T12350 973-974 CD denotes 1
T12349 965-972 NN denotes vessels
T12348 959-964 NN denotes blood
T12347 956-958 IN denotes in
T12346 948-955 VB denotes reduced
T12345 934-947 RB denotes significantly
T12344 930-933 VB denotes was
T12343 913-929 NN denotes immunoreactivity
T12342 906-912 NN denotes SMI-71
T12341 904-905 -COMMA- denotes ,
T12340 899-904 NN denotes study
T12339 891-898 JJ denotes present
T12338 887-890 DT denotes the
T12337 884-886 IN denotes In
T12336 881-882 -RRB- denotes ]
T12335 876-881 CD denotes 35-38
T12334 875-876 -LRB- denotes [
T12333 865-874 NN denotes junctions
T12332 860-864 NN denotes cell
T12331 848-859 JJ denotes endothelial
T12330 845-847 IN denotes at
T12329 835-844 VB denotes localized
T12328 831-834 RB denotes not
T12327 828-830 VB denotes is
T12326 821-827 NN denotes SMI-71
T12325 812-820 IN denotes although
T12324 810-811 -COMMA- denotes ,
T12323 809-810 -RRB- denotes ]
T12322 807-809 CD denotes 34
T12321 806-807 -LRB- denotes [
T12320 796-805 NN denotes processes
T12319 785-795 JJ denotes astrocytic
T12318 772-784 JJ denotes perivascular
T12317 769-771 IN denotes of
T12316 760-768 NN denotes swelling
T12315 756-759 CC denotes and
T12314 750-755 NN denotes cells
T12313 738-749 JJ denotes endothelial
T12312 730-737 IN denotes between
T12311 720-729 NN denotes junctions
T12310 706-719 JJ denotes intercellular
T12309 703-705 IN denotes of
T12308 694-702 NN denotes widening
T12307 691-693 TO denotes to
T12306 685-690 VB denotes leads
T12305 680-684 FW denotes vivo
T12304 677-679 FW denotes in
T12303 670-676 NN denotes SMI-71
T12302 667-669 IN denotes of
T12301 652-666 NN denotes neutralization
T12300 650-651 -COMMA- denotes ,
T12299 644-650 RB denotes Indeed
T12298 641-642 -RRB- denotes ]
T12297 639-641 CD denotes 33
T12296 638-639 -LRB- denotes [
T12295 632-637 NN denotes edema
T12294 622-631 JJ denotes vasogenic
T12293 619-621 IN denotes of
T12292 607-618 NN denotes development
T12291 603-606 CC denotes and
T12290 599-602 NN denotes BBB
T12289 595-598 DT denotes the
T12288 592-594 IN denotes of
T12287 584-591 NN denotes opening
T12286 581-583 IN denotes by
T12285 569-580 VB denotes accompanied
T12284 565-568 VB denotes are
T12283 554-564 NN denotes conditions
T12364 1057-1065 NN denotes sTNFp55R
R9445 T12195 T12194 arg1Of phosphorylation,p65
R9446 T12195 T12196 arg1Of phosphorylation,of
R9447 T12195 T12198 arg1Of phosphorylation,enhances
R9448 T12197 T12196 arg2Of NF-κB,of
R9449 T12198 T12203 arg1Of enhances,and
R9450 T12201 T12198 arg2Of potential,enhances
R9451 T12201 T12199 arg1Of potential,its
R9452 T12201 T12200 arg1Of potential,transactivation
R9453 T12203 T12202 arg1Of and,","
R9454 T12205 T12204 arg1Of phosphorylation,p65
R9455 T12205 T12206 arg1Of phosphorylation,occurs
R9456 T12206 T12203 arg2Of occurs,and
R9457 T12206 T12207 arg1Of occurs,in
R9458 T12206 T12214 arg1Of occurs,[
R9459 T12210 T12209 arg1Of cytoplasm,the
R9460 T12210 T12211 arg1Of cytoplasm,or
R9461 T12211 T12207 arg2Of or,in
R9462 T12211 T12208 arg1Of or,either
R9463 T12213 T12211 arg2Of nucleus,or
R9464 T12213 T12212 arg1Of nucleus,the
R9465 T12215 T12214 arg2Of 30,[
R9466 T12216 T12214 arg3Of ],[
R9467 T12220 T12217 arg2Of study,In
R9468 T12220 T12218 arg1Of study,the
R9469 T12220 T12219 arg1Of study,present
R9470 T12223 T12222 arg1Of immunoreactivity,p65-Thr435
R9471 T12223 T12224 arg1Of immunoreactivity,was
R9472 T12223 T12225 arg2Of immunoreactivity,detected
R9473 T12225 T12217 arg1Of detected,In
R9474 T12225 T12221 arg1Of detected,","
R9475 T12225 T12224 arg2Of detected,was
R9476 T12225 T12226 arg1Of detected,in
R9477 T12225 T12230 arg1Of detected,and
R9478 T12228 T12226 arg2Of cells,in
R9479 T12228 T12227 arg1Of cells,endothelial
R9480 T12230 T12229 arg1Of and,","
R9481 T12232 T12231 arg1Of immunoreactivity,its
R9482 T12232 T12233 arg1Of immunoreactivity,showed
R9483 T12233 T12230 arg2Of showed,and
R9484 T12233 T12237 arg1Of showed,to
R9485 T12236 T12233 arg2Of correlation,showed
R9486 T12236 T12234 arg1Of correlation,an
R9487 T12236 T12235 arg1Of correlation,inverse
R9488 T12239 T12237 arg2Of degree,to
R9489 T12239 T12238 arg1Of degree,the
R9490 T12239 T12240 arg1Of degree,of
R9491 T12242 T12240 arg2Of expression,of
R9492 T12242 T12241 arg1Of expression,SMI-71
R9493 T12243 T12244 arg1Of SMI-71,","
R9494 T12243 T12250 arg1Of SMI-71,is
R9495 T12248 T12244 arg2Of antigen,","
R9496 T12248 T12245 arg1Of antigen,an
R9497 T12248 T12246 arg1Of antigen,endothelial
R9498 T12248 T12247 arg1Of antigen,barrier
R9499 T12250 T12249 arg1Of is,","
R9500 T12252 T12250 arg2Of protein,is
R9501 T12252 T12251 arg1Of protein,a
R9502 T12252 T12253 arg2Of protein,expressed
R9503 T12256 T12253 arg1Of cells,expressed
R9504 T12256 T12254 arg2Of cells,by
R9505 T12256 T12255 arg1Of cells,endothelial
R9506 T12256 T12257 arg1Of cells,of
R9507 T12259 T12257 arg2Of BBB,of
R9508 T12259 T12258 arg1Of BBB,rat
R9509 T12259 T12260 arg1Of BBB,[
R9510 T12261 T12260 arg2Of 31,[
R9511 T12262 T12260 arg3Of ],[
R9512 T12265 T12263 arg2Of conditions,Under
R9513 T12265 T12264 arg1Of conditions,pathological
R9514 T12268 T12267 arg1Of expression,SMI-71
R9515 T12268 T12269 arg1Of expression,is
R9516 T12268 T12270 arg2Of expression,lost
R9517 T12270 T12263 arg1Of lost,Under
R9518 T12270 T12266 arg1Of lost,","
R9519 T12270 T12269 arg2Of lost,is
R9520 T12270 T12271 arg1Of lost,in
R9521 T12270 T12274 arg1Of lost,[
R9522 T12273 T12271 arg2Of cells,in
R9523 T12273 T12272 arg1Of cells,endothelial
R9524 T12275 T12274 arg2Of "5,7,8,30,32",[
R9525 T12276 T12274 arg3Of ],[
R9526 T12278 T12277 arg1Of phases,Acute
R9527 T12278 T12279 arg1Of phases,of
R9528 T12278 T12284 arg1Of phases,are
R9529 T12278 T12285 arg2Of phases,accompanied
R9530 T12283 T12279 arg2Of conditions,of
R9531 T12283 T12280 arg1Of conditions,the
R9532 T12283 T12281 arg1Of conditions,above
R9533 T12283 T12282 arg1Of conditions,pathological
R9534 T12285 T12284 arg2Of accompanied,are
R9535 T12285 T12296 arg1Of accompanied,[
R9536 T12287 T12288 arg1Of opening,of
R9537 T12287 T12291 arg1Of opening,and
R9538 T12290 T12288 arg2Of BBB,of
R9539 T12290 T12289 arg1Of BBB,the
R9540 T12291 T12285 arg1Of and,accompanied
R9541 T12291 T12286 arg2Of and,by
R9542 T12292 T12291 arg2Of development,and
R9543 T12292 T12293 arg1Of development,of
R9544 T12295 T12293 arg2Of edema,of
R9545 T12295 T12294 arg1Of edema,vasogenic
R9546 T12297 T12296 arg2Of 33,[
R9547 T12298 T12296 arg3Of ],[
R9548 T12301 T12302 arg1Of neutralization,of
R9549 T12301 T12305 arg1Of neutralization,vivo
R9550 T12301 T12306 arg1Of neutralization,leads
R9551 T12303 T12302 arg2Of SMI-71,of
R9552 T12305 T12304 arg1Of vivo,in
R9553 T12306 T12299 arg1Of leads,Indeed
R9554 T12306 T12300 arg1Of leads,","
R9555 T12306 T12307 arg1Of leads,to
R9556 T12306 T12324 arg1Of leads,","
R9557 T12306 T12325 arg1Of leads,although
R9558 T12308 T12309 arg1Of widening,of
R9559 T12308 T12315 arg1Of widening,and
R9560 T12311 T12309 arg2Of junctions,of
R9561 T12311 T12310 arg1Of junctions,intercellular
R9562 T12311 T12312 arg1Of junctions,between
R9563 T12314 T12312 arg2Of cells,between
R9564 T12314 T12313 arg1Of cells,endothelial
R9565 T12315 T12307 arg2Of and,to
R9566 T12316 T12315 arg2Of swelling,and
R9567 T12316 T12317 arg1Of swelling,of
R9568 T12320 T12317 arg2Of processes,of
R9569 T12320 T12318 arg1Of processes,perivascular
R9570 T12320 T12319 arg1Of processes,astrocytic
R9571 T12320 T12321 arg1Of processes,[
R9572 T12322 T12321 arg2Of 34,[
R9573 T12323 T12321 arg3Of ],[
R9574 T12326 T12327 arg1Of SMI-71,is
R9575 T12326 T12329 arg2Of SMI-71,localized
R9576 T12329 T12325 arg2Of localized,although
R9577 T12329 T12327 arg2Of localized,is
R9578 T12329 T12328 arg1Of localized,not
R9579 T12329 T12330 arg1Of localized,at
R9580 T12333 T12330 arg2Of junctions,at
R9581 T12333 T12331 arg1Of junctions,endothelial
R9582 T12333 T12332 arg1Of junctions,cell
R9583 T12333 T12334 arg1Of junctions,[
R9584 T12335 T12334 arg2Of 35-38,[
R9585 T12336 T12334 arg3Of ],[
R9586 T12340 T12337 arg2Of study,In
R9587 T12340 T12338 arg1Of study,the
R9588 T12340 T12339 arg1Of study,present
R9589 T12343 T12342 arg1Of immunoreactivity,SMI-71
R9590 T12343 T12344 arg1Of immunoreactivity,was
R9591 T12343 T12346 arg2Of immunoreactivity,reduced
R9592 T12346 T12337 arg1Of reduced,In
R9593 T12346 T12341 arg1Of reduced,","
R9594 T12346 T12344 arg2Of reduced,was
R9595 T12346 T12345 arg1Of reduced,significantly
R9596 T12346 T12347 arg1Of reduced,in
R9597 T12346 T12352 arg1Of reduced,after
R9598 T12346 T12354 arg1Of reduced,when
R9599 T12349 T12347 arg2Of vessels,in
R9600 T12349 T12348 arg1Of vessels,blood
R9601 T12351 T12350 arg1Of day,1
R9602 T12352 T12351 arg1Of after,day
R9603 T12353 T12352 arg2Of SE,after
R9604 T12355 T12356 arg1Of vasogenic,edema
R9605 T12355 T12357 arg1Of vasogenic,and
R9606 T12358 T12357 arg2Of neuronal,and
R9607 T12359 T12355 arg1Of damage,vasogenic
R9608 T12359 T12358 arg1Of damage,neuronal
R9609 T12359 T12360 arg1Of damage,were
R9610 T12359 T12361 arg2Of damage,observed
R9611 T12361 T12354 arg2Of observed,when
R9612 T12361 T12360 arg2Of observed,were
R9613 T12365 T12364 arg1Of infusion,sTNFp55R
R9614 T12365 T12367 arg1Of infusion,prevented
R9615 T12367 T12362 arg1Of prevented,Furthermore
R9616 T12367 T12363 arg1Of prevented,","
R9617 T12367 T12366 arg1Of prevented,effectively
R9618 T12370 T12367 arg2Of down-regulation,prevented
R9619 T12370 T12368 arg1Of down-regulation,SE-induced
R9620 T12370 T12369 arg1Of down-regulation,SMI-71
R9621 T12371 T12373 arg1Of With,to
R9622 T12372 T12371 arg2Of respect,With
R9623 T12375 T12371 arg3Of phosphorylation,With
R9624 T12375 T12374 arg1Of phosphorylation,the
R9625 T12375 T12376 arg1Of phosphorylation,of
R9626 T12375 T12378 arg1Of phosphorylation,by
R9627 T12377 T12376 arg2Of p65-Thr435,of
R9628 T12379 T12378 arg2Of TNF-α,by
R9629 T12379 T12380 arg1Of TNF-α,[
R9630 T12381 T12380 arg2Of 39,[
R9631 T12382 T12380 arg3Of ],[
R9632 T12385 T12384 arg1Of findings,our
R9633 T12385 T12386 arg1Of findings,indicate
R9634 T12386 T12371 arg1Of indicate,With
R9635 T12386 T12383 arg1Of indicate,","
R9636 T12390 T12388 arg1Of phosphorylation,TNF-α-mediated
R9637 T12390 T12389 arg1Of phosphorylation,p65-Thr435
R9638 T12390 T12391 arg1Of phosphorylation,in
R9639 T12390 T12394 arg1Of phosphorylation,may
R9640 T12390 T12395 arg1Of phosphorylation,play
R9641 T12393 T12391 arg2Of cells,in
R9642 T12393 T12392 arg1Of cells,endothelial
R9643 T12395 T12386 arg2Of play,indicate
R9644 T12395 T12387 arg1Of play,that
R9645 T12395 T12394 arg2Of play,may
R9646 T12395 T12399 arg1Of play,in
R9647 T12398 T12395 arg2Of role,play
R9648 T12398 T12396 arg1Of role,an
R9649 T12398 T12397 arg1Of role,important
R9650 T12402 T12400 arg1Of induction,vasogenic
R9651 T12402 T12401 arg1Of induction,edema
R9652 T12402 T12403 arg1Of induction,via
R9653 T12402 T12406 arg1Of induction,or
R9654 T12405 T12403 arg2Of degradation,via
R9655 T12405 T12404 arg1Of degradation,SMI-71
R9656 T12406 T12399 arg2Of or,in
R9657 T12409 T12406 arg2Of dysfunction,or
R9658 T12409 T12407 arg1Of dysfunction,its
R9659 T12409 T12408 arg1Of dysfunction,posttranslational
R9660 T12409 T12410 arg1Of dysfunction,influencing
R9661 T12412 T12410 arg2Of permeability,influencing
R9662 T12412 T12411 arg1Of permeability,BBB

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11674 167-170 Protein denotes p65
T11673 73-76 Protein denotes p65
T11672 0-3 Protein denotes p65
T11679 1239-1242 Protein denotes p65
T11678 1224-1229 Protein denotes TNF-α
T11677 1185-1190 Protein denotes TNF-α
T11676 1171-1174 Protein denotes p65
T11675 1058-1065 Protein denotes TNFp55R

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T12870 1239-1242 http://www.uniprot.org/uniprot/P21579 denotes p65
T12869 1171-1174 http://www.uniprot.org/uniprot/P21579 denotes p65
T12868 167-170 http://www.uniprot.org/uniprot/P21579 denotes p65
T12867 73-76 http://www.uniprot.org/uniprot/P21579 denotes p65
T12866 0-3 http://www.uniprot.org/uniprot/P21579 denotes p65
T12851 1239-1242 http://www.uniprot.org/uniprot/Q04206 denotes p65
T12850 1171-1174 http://www.uniprot.org/uniprot/Q04206 denotes p65
T12849 167-170 http://www.uniprot.org/uniprot/Q04206 denotes p65
T12848 73-76 http://www.uniprot.org/uniprot/Q04206 denotes p65
T12847 0-3 http://www.uniprot.org/uniprot/Q04206 denotes p65
T12841 1224-1229 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T12840 1185-1190 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T12829 1224-1227 http://www.uniprot.org/uniprot/P01375 denotes TNF
T12828 1185-1188 http://www.uniprot.org/uniprot/P01375 denotes TNF

UBERON-AE

Id Subject Object Predicate Lexical cue
T11616 965-972 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessels
T11614 959-972 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessels
T11612 959-964 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood

GO-BP

Id Subject Object Predicate Lexical cue
T11736 1354-1365 http://purl.obolibrary.org/obo/GO_0009056 denotes degradation
T11734 1120-1130 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T11733 835-844 http://purl.obolibrary.org/obo/GO_0051179 denotes localized
T11732 42-57 http://purl.obolibrary.org/obo/GO_2000144 denotes transactivation
T11731 607-618 http://purl.obolibrary.org/obo/GO_0032502 denotes development
T11722 1250-1265 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T11721 1152-1167 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T11720 77-92 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T11719 4-19 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T11760 860-874 http://purl.obolibrary.org/obo/GO_0030054 denotes cell junctions
T11759 706-729 http://purl.obolibrary.org/obo/GO_0005911 denotes intercellular junctions
T11758 131-138 http://purl.obolibrary.org/obo/GO_0005634 denotes nucleus
T11757 114-123 http://purl.obolibrary.org/obo/GO_0005737 denotes cytoplasm
T11753 1281-1286 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T11752 750-755 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T11751 494-499 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T11750 399-404 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T11749 223-228 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T11644 1132-1432 Sentence denotes With respect to the phosphorylation of p65-Thr435 by TNF-α [39], our findings indicate that TNF-α-mediated p65-Thr435 phosphorylation in endothelial cells may play an important role in vasogenic edema induction via SMI-71 degradation or its posttranslational dysfunction influencing BBB permeability.
T11643 1044-1131 Sentence denotes Furthermore, sTNFp55R infusion effectively prevented SE-induced SMI-71 down-regulation.
T11642 884-1043 Sentence denotes In the present study, SMI-71 immunoreactivity was significantly reduced in blood vessels 1 day after SE when vasogenic edema and neuronal damage were observed.
T11641 644-883 Sentence denotes Indeed, neutralization of SMI-71 in vivo leads to widening of intercellular junctions between endothelial cells and swelling of perivascular astrocytic processes [34], although SMI-71 is not localized at endothelial cell junctions [35-38].
T11640 515-643 Sentence denotes Acute phases of the above pathological conditions are accompanied by opening of the BBB and development of vasogenic edema [33].
T11639 422-514 Sentence denotes Under pathological conditions, SMI-71 expression is lost in endothelial cells [5,7,8,30,32].
T11638 321-421 Sentence denotes SMI-71, an endothelial barrier antigen, is a protein expressed by endothelial cells of rat BBB [31].
T11637 145-320 Sentence denotes In the present study, p65-Thr435 immunoreactivity was detected in endothelial cells, and its immunoreactivity showed an inverse correlation to the degree of SMI-71 expression.
T11636 0-144 Sentence denotes p65 phosphorylation of NF-κB enhances its transactivation potential, and p65 phosphorylation occurs in either the cytoplasm or the nucleus [30].
T221 0-144 Sentence denotes p65 phosphorylation of NF-κB enhances its transactivation potential, and p65 phosphorylation occurs in either the cytoplasm or the nucleus [30].
T222 145-320 Sentence denotes In the present study, p65-Thr435 immunoreactivity was detected in endothelial cells, and its immunoreactivity showed an inverse correlation to the degree of SMI-71 expression.
T223 321-421 Sentence denotes SMI-71, an endothelial barrier antigen, is a protein expressed by endothelial cells of rat BBB [31].
T224 422-514 Sentence denotes Under pathological conditions, SMI-71 expression is lost in endothelial cells [5,7,8,30,32].
T225 515-643 Sentence denotes Acute phases of the above pathological conditions are accompanied by opening of the BBB and development of vasogenic edema [33].
T226 644-883 Sentence denotes Indeed, neutralization of SMI-71 in vivo leads to widening of intercellular junctions between endothelial cells and swelling of perivascular astrocytic processes [34], although SMI-71 is not localized at endothelial cell junctions [35-38].
T227 884-1043 Sentence denotes In the present study, SMI-71 immunoreactivity was significantly reduced in blood vessels 1 day after SE when vasogenic edema and neuronal damage were observed.
T228 1044-1131 Sentence denotes Furthermore, sTNFp55R infusion effectively prevented SE-induced SMI-71 down-regulation.
T229 1132-1432 Sentence denotes With respect to the phosphorylation of p65-Thr435 by TNF-α [39], our findings indicate that TNF-α-mediated p65-Thr435 phosphorylation in endothelial cells may play an important role in vasogenic edema induction via SMI-71 degradation or its posttranslational dysfunction influencing BBB permeability.

simple1

Id Subject Object Predicate Lexical cue
T11932 1239-1242 Protein denotes p65
T11931 1224-1229 Protein denotes TNF-α
T11930 1185-1190 Protein denotes TNF-α
T11929 1171-1174 Protein denotes p65
T11928 1058-1065 Protein denotes TNFp55R
T11927 167-170 Protein denotes p65
T11926 73-76 Protein denotes p65
T11925 0-3 Protein denotes p65

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14242 1230-1238 Positive_regulation denotes mediated
T14241 1250-1265 Phosphorylation denotes phosphorylation
T14240 1152-1167 Phosphorylation denotes phosphorylation
T14239 77-92 Phosphorylation denotes phosphorylation
T14238 93-99 Positive_regulation denotes occurs
T14237 29-37 Positive_regulation denotes enhances
T14236 4-19 Phosphorylation denotes phosphorylation
T14201 1239-1242 Protein denotes p65
T14200 1224-1229 Protein denotes TNF-α
T14199 1185-1190 Protein denotes TNF-α
T14198 1171-1174 Protein denotes p65
T14197 1058-1065 Protein denotes TNFp55R
T14196 167-170 Protein denotes p65
T14195 73-76 Protein denotes p65
T14194 0-3 Protein denotes p65
R11153 T14194 T14236 themeOf p65,phosphorylation
R11154 T14195 T14239 themeOf p65,phosphorylation
R11157 T14198 T14240 themeOf p65,phosphorylation
R11158 T14201 T14242 themeOf p65,mediated
R11159 T14201 T14241 themeOf p65,phosphorylation
R11190 T14236 T14237 themeOf phosphorylation,enhances
R11191 T14239 T14238 themeOf phosphorylation,occurs

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T13843 1230-1238 Positive_regulation denotes mediated
T13842 1250-1265 Phosphorylation denotes phosphorylation
T13841 1152-1167 Phosphorylation denotes phosphorylation
T13840 77-92 Phosphorylation denotes phosphorylation
T13839 4-19 Phosphorylation denotes phosphorylation
T13804 1239-1242 Protein denotes p65
T13803 1224-1229 Protein denotes TNF-α
T13802 1185-1190 Protein denotes TNF-α
T13801 1171-1174 Protein denotes p65
T13800 1058-1065 Protein denotes TNFp55R
T13799 167-170 Protein denotes p65
T13798 73-76 Protein denotes p65
T13797 0-3 Protein denotes p65
R10973 T13797 T13839 themeOf p65,phosphorylation
R10975 T13798 T13840 themeOf p65,phosphorylation
R10976 T13802 T13841 themeOf TNF-α,phosphorylation
R10977 T13803 T13843 causeOf TNF-α,mediated
R10978 T13804 T13842 themeOf p65,phosphorylation
R11030 T13842 T13843 themeOf phosphorylation,mediated

DLUT931

Id Subject Object Predicate Lexical cue
T13919 1230-1238 Positive_regulation denotes mediated
T13918 1250-1265 Phosphorylation denotes phosphorylation
T13917 1152-1167 Phosphorylation denotes phosphorylation
T13916 77-92 Phosphorylation denotes phosphorylation
T13915 4-19 Phosphorylation denotes phosphorylation
T13879 1239-1242 Protein denotes p65
T13878 1224-1229 Protein denotes TNF-α
T13877 1185-1190 Protein denotes TNF-α
T13876 1171-1174 Protein denotes p65
T13875 1058-1065 Protein denotes TNFp55R
T13874 167-170 Protein denotes p65
T13873 73-76 Protein denotes p65
T13872 0-3 Protein denotes p65
R10989 T13872 T13915 themeOf p65,phosphorylation
R10991 T13873 T13916 themeOf p65,phosphorylation
R10993 T13876 T13917 themeOf p65,phosphorylation
R10995 T13877 T13917 themeOf TNF-α,phosphorylation
R10996 T13878 T13919 causeOf TNF-α,mediated
R10997 T13879 T13918 themeOf p65,phosphorylation
R11029 T13918 T13919 themeOf phosphorylation,mediated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T14336 110-123 Entity denotes the cytoplasm
T14334 211-228 Entity denotes endothelial cells
T14330 482-513 Entity denotes endothelial cells [5,7,8,30,32]
T14329 1057-1074 Entity denotes sTNFp55R infusion
T14327 0-3 Protein denotes p65
T14310 364-420 Protein denotes a protein expressed by endothelial cells of rat BBB [31]
T14300 1168-1181 Protein denotes of p65-Thr435
T14298 985-987 Entity denotes SE
T14297 127-143 Entity denotes the nucleus [30]
T14293 1097-1107 Entity denotes SE-induced
T14292 167-177 Entity denotes p65-Thr435
T14291 1239-1249 Protein denotes p65-Thr435
T14290 73-76 Protein denotes p65
T14284 1058-1061 Protein denotes TNF
T14275 20-28 Protein denotes of NF-κB
T14268 1224-1238 Protein denotes TNF-α-mediated
T14266 384-420 Entity denotes by endothelial cells of rat BBB [31]
T14412 73-92 Phosphorylation denotes p65 phosphorylation
T14410 364-420 Gene_expression denotes a protein expressed by endothelial cells of rat BBB [31]
T14406 1224-1286 Regulation denotes TNF-α-mediated p65-Thr435 phosphorylation in endothelial cells
T14398 0-28 Phosphorylation denotes p65 phosphorylation of NF-κB
T14395 1148-1196 Phosphorylation denotes the phosphorylation of p65-Thr435 by TNF-α [39],
T14388 1269-1286 Entity denotes endothelial cells
T14386 171-177 Entity denotes Thr435
T14371 1168-1181 Entity denotes of p65-Thr435
T14370 848-864 Entity denotes endothelial cell
T14366 703-755 Entity denotes of intercellular junctions between endothelial cells
T14361 167-177 Protein denotes p65-Thr435
T14358 738-755 Entity denotes endothelial cells
T14352 1182-1195 Protein denotes by TNF-α [39]
T14347 1239-1249 Entity denotes p65-Thr435
T14342 352-360 Entity denotes antigen,
R11189 T14268 T14406 causeOf TNF-α-mediated,TNF-α-mediated p65-Thr435 phosphorylation in endothelial cells
R11195 T14275 T14398 themeOf of NF-κB,p65 phosphorylation of NF-κB
R11199 T14290 T14412 themeOf p65,p65 phosphorylation
R11203 T14300 T14395 themeOf of p65-Thr435,"the phosphorylation of p65-Thr435 by TNF-α [39],"
R11205 T14310 T14410 themeOf a protein expressed by endothelial cells of rat BBB [31],a protein expressed by endothelial cells of rat BBB [31]
R11210 T14327 T14398 causeOf p65,p65 phosphorylation of NF-κB
R11212 T14352 T14395 causeOf by TNF-α [39],"the phosphorylation of p65-Thr435 by TNF-α [39],"
R11218 T14371 T14300 partOf of p65-Thr435,of p65-Thr435
R11219 T14371 T14395 siteOf of p65-Thr435,"the phosphorylation of p65-Thr435 by TNF-α [39],"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T13249 685-690 VBZ denotes leads
T13248 680-684 NN denotes vivo
T13247 677-679 IN denotes in
T13246 670-676 NN denotes SMI-71
T13245 667-669 IN denotes of
T13244 652-666 NN denotes neutralization
T13243 650-651 , denotes ,
T13242 644-650 RB denotes Indeed
T13241 642-643 . denotes .
T13240 641-642 NNP denotes ]
T13239 639-641 CD denotes 33
T13238 638-639 NNP denotes [
T13237 632-637 NN denotes edema
T13236 622-631 JJ denotes vasogenic
T13235 619-621 IN denotes of
T13234 607-618 NN denotes development
T13233 603-606 CC denotes and
T13232 599-602 NNP denotes BBB
T13231 595-598 DT denotes the
T13230 592-594 IN denotes of
T13229 584-591 VBG denotes opening
T13228 581-583 IN denotes by
T13227 569-580 VBN denotes accompanied
T13226 565-568 VBP denotes are
T13225 554-564 NNS denotes conditions
T13224 541-553 JJ denotes pathological
T13223 535-540 JJ denotes above
T13222 531-534 DT denotes the
T13221 528-530 IN denotes of
T13220 521-527 NNS denotes phases
T13219 515-520 JJ denotes Acute
T13218 513-514 . denotes .
T13217 512-513 NNP denotes ]
T13216 501-512 CD denotes 5,7,8,30,32
T13215 500-501 NNP denotes [
T13214 494-499 NNS denotes cells
T13213 482-493 JJ denotes endothelial
T13212 479-481 IN denotes in
T13211 474-478 VBN denotes lost
T13210 471-473 VBZ denotes is
T13209 460-470 NN denotes expression
T13208 453-459 NNP denotes SMI-71
T13207 451-452 , denotes ,
T13206 441-451 NNS denotes conditions
T13205 428-440 JJ denotes pathological
T13204 422-427 IN denotes Under
T13203 420-421 . denotes .
T13202 419-420 NNP denotes ]
T13201 417-419 CD denotes 31
T13200 416-417 NNP denotes [
T13199 412-415 NNP denotes BBB
T13198 408-411 NN denotes rat
T13197 405-407 IN denotes of
T13196 399-404 NNS denotes cells
T13195 387-398 JJ denotes endothelial
T13194 384-386 IN denotes by
T13193 374-383 VBN denotes expressed
T13192 366-373 NN denotes protein
T13191 364-365 DT denotes a
T13190 361-363 VBZ denotes is
T13189 359-360 , denotes ,
T13188 352-359 NN denotes antigen
T13187 344-351 NN denotes barrier
T13186 332-343 JJ denotes endothelial
T13185 329-331 DT denotes an
T13184 327-328 , denotes ,
T13183 321-327 CD denotes SMI-71
T13182 319-320 . denotes .
T13181 309-319 NN denotes expression
T13180 302-308 NNP denotes SMI-71
T13179 299-301 IN denotes of
T13178 292-298 NN denotes degree
T13177 288-291 DT denotes the
T13176 285-287 TO denotes to
T13175 273-284 NN denotes correlation
T13174 265-272 JJ denotes inverse
T13173 262-264 DT denotes an
T13172 255-261 VBD denotes showed
T13171 238-254 NN denotes immunoreactivity
T13170 234-237 PRP$ denotes its
T13169 230-233 CC denotes and
T13168 228-229 , denotes ,
T13167 223-228 NNS denotes cells
T13166 211-222 JJ denotes endothelial
T13165 208-210 IN denotes in
T13164 199-207 VBN denotes detected
T13163 195-198 VBD denotes was
T13162 178-194 NN denotes immunoreactivity
T13161 167-177 NN denotes p65-Thr435
T13160 165-166 , denotes ,
T13159 160-165 NN denotes study
T13158 152-159 JJ denotes present
T13157 148-151 DT denotes the
T13156 145-147 IN denotes In
T13155 143-144 . denotes .
T13154 142-143 NNP denotes ]
T13153 140-142 CD denotes 30
T13152 139-140 NNP denotes [
T13151 131-138 NN denotes nucleus
T13150 127-130 DT denotes the
T13149 124-126 CC denotes or
T13148 114-123 NN denotes cytoplasm
T13147 110-113 DT denotes the
T13146 103-109 CC denotes either
T13145 100-102 IN denotes in
T13144 93-99 VBZ denotes occurs
T13143 77-92 NN denotes phosphorylation
T13142 73-76 CD denotes p65
T13141 69-72 CC denotes and
T13140 67-68 , denotes ,
T13139 58-67 NN denotes potential
T13138 42-57 NN denotes transactivation
T13137 38-41 PRP$ denotes its
T13136 29-37 VBZ denotes enhances
T13135 23-28 JJ denotes NF-κB
T13134 20-22 IN denotes of
T13133 4-19 NN denotes phosphorylation
T13132 0-3 NNS denotes p65
T13359 1431-1432 . denotes .
T13358 1419-1431 NN denotes permeability
T13357 1415-1418 NNP denotes BBB
T13356 1403-1414 VBG denotes influencing
T13355 1391-1402 NN denotes dysfunction
T13354 1373-1390 JJ denotes posttranslational
T13353 1369-1372 PRP$ denotes its
T13352 1366-1368 CC denotes or
T13351 1354-1365 NN denotes degradation
T13350 1347-1353 NNP denotes SMI-71
T13349 1343-1346 IN denotes via
T13348 1333-1342 NN denotes induction
T13347 1327-1332 NN denotes edema
T13346 1317-1326 JJ denotes vasogenic
T13345 1314-1316 IN denotes in
T13344 1309-1313 NN denotes role
T13343 1299-1308 JJ denotes important
T13342 1296-1298 DT denotes an
T13341 1291-1295 VB denotes play
T13340 1287-1290 MD denotes may
T13339 1281-1286 NNS denotes cells
T13338 1269-1280 JJ denotes endothelial
T13337 1266-1268 IN denotes in
T13336 1250-1265 NN denotes phosphorylation
T13335 1239-1249 NN denotes p65-Thr435
T13334 1224-1238 JJ denotes TNF-α-mediated
T13333 1219-1223 IN denotes that
T13332 1210-1218 VBP denotes indicate
T13331 1201-1209 NNS denotes findings
T13330 1197-1200 PRP$ denotes our
T13329 1195-1196 , denotes ,
T13328 1194-1195 NNP denotes ]
T13327 1192-1194 CD denotes 39
T13326 1191-1192 NNP denotes [
T13325 1185-1190 NNP denotes TNF-α
T13324 1182-1184 IN denotes by
T13323 1171-1181 NN denotes p65-Thr435
T13322 1168-1170 IN denotes of
T13321 1152-1167 NN denotes phosphorylation
T13320 1148-1151 DT denotes the
T13319 1145-1147 TO denotes to
T13318 1137-1144 NN denotes respect
T13317 1132-1136 IN denotes With
T13316 1130-1131 . denotes .
T13315 1115-1130 NN denotes down-regulation
T13314 1108-1114 NNP denotes SMI-71
T13313 1097-1107 JJ denotes SE-induced
T13312 1087-1096 VBD denotes prevented
T13311 1075-1086 RB denotes effectively
T13310 1066-1074 NN denotes infusion
T13309 1057-1065 JJ denotes sTNFp55R
T13308 1055-1056 , denotes ,
T13307 1044-1055 RB denotes Furthermore
T13306 1042-1043 . denotes .
T13305 1034-1042 VBN denotes observed
T13304 1029-1033 VBD denotes were
T13303 1022-1028 NN denotes damage
T13302 1013-1021 JJ denotes neuronal
T13301 1009-1012 CC denotes and
T13300 1003-1008 NN denotes edema
T13299 993-1002 JJ denotes vasogenic
T13298 988-992 WRB denotes when
T13297 985-987 NNP denotes SE
T13296 979-984 IN denotes after
T13295 975-978 NN denotes day
T13294 973-974 CD denotes 1
T13293 965-972 NNS denotes vessels
T13292 959-964 NN denotes blood
T13291 956-958 IN denotes in
T13290 948-955 VBN denotes reduced
T13289 934-947 RB denotes significantly
T13288 930-933 VBD denotes was
T13287 913-929 NN denotes immunoreactivity
T13286 906-912 NNP denotes SMI-71
T13285 904-905 , denotes ,
T13284 899-904 NN denotes study
T13283 891-898 JJ denotes present
T13282 887-890 DT denotes the
T13281 884-886 IN denotes In
T13280 882-883 . denotes .
T13279 881-882 NNP denotes ]
T13278 876-881 CD denotes 35-38
T13277 875-876 NNP denotes [
T13276 865-874 NNS denotes junctions
T13275 860-864 NN denotes cell
T13274 848-859 JJ denotes endothelial
T13273 845-847 IN denotes at
T13272 835-844 VBN denotes localized
T13271 831-834 RB denotes not
T13270 828-830 VBZ denotes is
T13269 821-827 NNP denotes SMI-71
T13268 812-820 IN denotes although
T13267 810-811 , denotes ,
T13266 809-810 NNP denotes ]
T13265 807-809 CD denotes 34
T13264 806-807 NNP denotes [
T13263 796-805 NNS denotes processes
T13262 785-795 JJ denotes astrocytic
T13261 772-784 JJ denotes perivascular
T13260 769-771 IN denotes of
T13259 760-768 VBG denotes swelling
T13258 756-759 CC denotes and
T13257 750-755 NNS denotes cells
T13256 738-749 JJ denotes endothelial
T13255 730-737 IN denotes between
T13254 720-729 NNS denotes junctions
T13253 706-719 JJ denotes intercellular
T13252 703-705 IN denotes of
T13251 694-702 VBG denotes widening
T13250 691-693 TO denotes to
R10319 T13132 T13133 compound p65,phosphorylation
R10320 T13133 T13136 nsubj phosphorylation,enhances
R10321 T13134 T13133 prep of,phosphorylation
R10322 T13135 T13134 pobj NF-κB,of
R10323 T13136 T13136 ROOT enhances,enhances
R10324 T13137 T13139 poss its,potential
R10325 T13138 T13139 compound transactivation,potential
R10326 T13139 T13136 dobj potential,enhances
R10327 T13140 T13136 punct ",",enhances
R10328 T13141 T13136 cc and,enhances
R10329 T13142 T13144 nummod p65,occurs
R10330 T13143 T13144 nsubj phosphorylation,occurs
R10331 T13144 T13136 conj occurs,enhances
R10332 T13145 T13144 prep in,occurs
R10333 T13146 T13148 preconj either,cytoplasm
R10334 T13147 T13148 det the,cytoplasm
R10335 T13148 T13145 pobj cytoplasm,in
R10336 T13149 T13148 cc or,cytoplasm
R10337 T13150 T13151 det the,nucleus
R10338 T13151 T13148 conj nucleus,cytoplasm
R10339 T13152 T13154 quantmod [,]
R10340 T13153 T13154 nummod 30,]
R10341 T13154 T13151 appos ],nucleus
R10342 T13155 T13144 punct .,occurs
R10343 T13156 T13164 prep In,detected
R10344 T13157 T13159 det the,study
R10345 T13158 T13159 amod present,study
R10346 T13159 T13156 pobj study,In
R10347 T13160 T13164 punct ",",detected
R10348 T13161 T13162 compound p65-Thr435,immunoreactivity
R10349 T13162 T13164 nsubjpass immunoreactivity,detected
R10350 T13163 T13164 auxpass was,detected
R10351 T13164 T13164 ROOT detected,detected
R10352 T13165 T13164 prep in,detected
R10353 T13166 T13167 amod endothelial,cells
R10354 T13167 T13165 pobj cells,in
R10355 T13168 T13164 punct ",",detected
R10356 T13169 T13164 cc and,detected
R10357 T13170 T13171 poss its,immunoreactivity
R10358 T13171 T13172 nsubj immunoreactivity,showed
R10359 T13172 T13164 conj showed,detected
R10360 T13173 T13175 det an,correlation
R10361 T13174 T13175 amod inverse,correlation
R10362 T13175 T13172 dobj correlation,showed
R10363 T13176 T13175 prep to,correlation
R10364 T13177 T13178 det the,degree
R10365 T13178 T13176 pobj degree,to
R10366 T13179 T13178 prep of,degree
R10367 T13180 T13181 compound SMI-71,expression
R10368 T13181 T13179 pobj expression,of
R10369 T13182 T13172 punct .,showed
R10370 T13183 T13190 nsubj SMI-71,is
R10371 T13184 T13183 punct ",",SMI-71
R10372 T13185 T13188 det an,antigen
R10373 T13186 T13188 amod endothelial,antigen
R10374 T13187 T13188 compound barrier,antigen
R10375 T13188 T13183 appos antigen,SMI-71
R10376 T13189 T13190 punct ",",is
R10377 T13190 T13190 ROOT is,is
R10378 T13191 T13192 det a,protein
R10379 T13192 T13190 attr protein,is
R10380 T13193 T13192 acl expressed,protein
R10381 T13194 T13193 agent by,expressed
R10382 T13195 T13196 amod endothelial,cells
R10383 T13196 T13194 pobj cells,by
R10384 T13197 T13196 prep of,cells
R10385 T13198 T13199 compound rat,BBB
R10386 T13199 T13200 compound BBB,[
R10387 T13200 T13197 pobj [,of
R10388 T13201 T13202 nummod 31,]
R10389 T13202 T13196 appos ],cells
R10390 T13203 T13190 punct .,is
R10391 T13204 T13211 prep Under,lost
R10392 T13205 T13206 amod pathological,conditions
R10393 T13206 T13204 pobj conditions,Under
R10394 T13207 T13211 punct ",",lost
R10395 T13208 T13209 compound SMI-71,expression
R10396 T13209 T13211 nsubjpass expression,lost
R10397 T13210 T13211 auxpass is,lost
R10398 T13211 T13211 ROOT lost,lost
R10399 T13212 T13211 prep in,lost
R10400 T13213 T13214 amod endothelial,cells
R10401 T13214 T13212 pobj cells,in
R10402 T13215 T13217 compound [,]
R10403 T13216 T13217 compound "5,7,8,30,32",]
R10404 T13217 T13211 dobj ],lost
R10405 T13218 T13211 punct .,lost
R10406 T13219 T13220 amod Acute,phases
R10407 T13220 T13227 nsubjpass phases,accompanied
R10408 T13221 T13220 prep of,phases
R10409 T13222 T13225 det the,conditions
R10410 T13223 T13225 amod above,conditions
R10411 T13224 T13225 amod pathological,conditions
R10412 T13225 T13221 pobj conditions,of
R10413 T13226 T13227 auxpass are,accompanied
R10414 T13227 T13227 ROOT accompanied,accompanied
R10415 T13228 T13227 agent by,accompanied
R10416 T13229 T13228 pobj opening,by
R10417 T13230 T13229 prep of,opening
R10418 T13231 T13232 det the,BBB
R10419 T13232 T13230 pobj BBB,of
R10420 T13233 T13232 cc and,BBB
R10421 T13234 T13230 pobj development,of
R10422 T13235 T13234 prep of,development
R10423 T13236 T13237 amod vasogenic,edema
R10424 T13237 T13235 pobj edema,of
R10425 T13238 T13240 nmod [,]
R10426 T13239 T13240 nummod 33,]
R10427 T13240 T13237 appos ],edema
R10428 T13241 T13227 punct .,accompanied
R10429 T13242 T13249 advmod Indeed,leads
R10430 T13243 T13249 punct ",",leads
R10431 T13244 T13249 nsubj neutralization,leads
R10432 T13245 T13244 prep of,neutralization
R10433 T13246 T13245 pobj SMI-71,of
R10434 T13247 T13244 prep in,neutralization
R10435 T13248 T13247 pobj vivo,in
R10436 T13249 T13249 ROOT leads,leads
R10437 T13250 T13249 prep to,leads
R10438 T13251 T13250 pcomp widening,to
R10439 T13252 T13251 prep of,widening
R10440 T13253 T13254 amod intercellular,junctions
R10441 T13254 T13252 pobj junctions,of
R10442 T13255 T13254 prep between,junctions
R10443 T13256 T13257 amod endothelial,cells
R10444 T13257 T13255 pobj cells,between
R10445 T13258 T13257 cc and,cells
R10446 T13259 T13251 conj swelling,widening
R10447 T13260 T13259 prep of,swelling
R10448 T13261 T13263 amod perivascular,processes
R10449 T13262 T13263 amod astrocytic,processes
R10450 T13263 T13260 pobj processes,of
R10451 T13264 T13266 nmod [,]
R10452 T13265 T13266 nummod 34,]
R10453 T13266 T13250 pobj ],to
R10454 T13267 T13249 punct ",",leads
R10455 T13268 T13272 mark although,localized
R10456 T13269 T13272 nsubjpass SMI-71,localized
R10457 T13270 T13272 auxpass is,localized
R10458 T13271 T13272 neg not,localized
R10459 T13272 T13249 advcl localized,leads
R10460 T13273 T13272 prep at,localized
R10461 T13274 T13275 amod endothelial,cell
R10462 T13275 T13276 compound cell,junctions
R10463 T13276 T13273 pobj junctions,at
R10464 T13277 T13279 compound [,]
R10465 T13278 T13279 compound 35-38,]
R10466 T13279 T13272 npadvmod ],localized
R10467 T13280 T13249 punct .,leads
R10468 T13281 T13290 prep In,reduced
R10469 T13282 T13284 det the,study
R10470 T13283 T13284 amod present,study
R10471 T13284 T13281 pobj study,In
R10472 T13285 T13290 punct ",",reduced
R10473 T13286 T13287 compound SMI-71,immunoreactivity
R10474 T13287 T13290 nsubjpass immunoreactivity,reduced
R10475 T13288 T13290 auxpass was,reduced
R10476 T13289 T13290 advmod significantly,reduced
R10477 T13290 T13290 ROOT reduced,reduced
R10478 T13291 T13290 prep in,reduced
R10479 T13292 T13293 compound blood,vessels
R10480 T13293 T13291 pobj vessels,in
R10481 T13294 T13295 nummod 1,day
R10482 T13295 T13290 npadvmod day,reduced
R10483 T13296 T13305 mark after,observed
R10484 T13297 T13296 pobj SE,after
R10485 T13298 T13305 advmod when,observed
R10486 T13299 T13300 amod vasogenic,edema
R10487 T13300 T13305 nsubjpass edema,observed
R10488 T13301 T13300 cc and,edema
R10489 T13302 T13303 amod neuronal,damage
R10490 T13303 T13300 conj damage,edema
R10491 T13304 T13305 auxpass were,observed
R10492 T13305 T13295 advcl observed,day
R10493 T13306 T13290 punct .,reduced
R10494 T13307 T13312 advmod Furthermore,prevented
R10495 T13308 T13312 punct ",",prevented
R10496 T13309 T13310 amod sTNFp55R,infusion
R10497 T13310 T13312 nsubj infusion,prevented
R10498 T13311 T13312 advmod effectively,prevented
R10499 T13312 T13312 ROOT prevented,prevented
R10500 T13313 T13315 amod SE-induced,down-regulation
R10501 T13314 T13315 compound SMI-71,down-regulation
R10502 T13315 T13312 dobj down-regulation,prevented
R10503 T13316 T13312 punct .,prevented
R10504 T13317 T13332 prep With,indicate
R10505 T13318 T13317 pobj respect,With
R10506 T13319 T13318 prep to,respect
R10507 T13320 T13321 det the,phosphorylation
R10508 T13321 T13319 pobj phosphorylation,to
R10509 T13322 T13321 prep of,phosphorylation
R10510 T13323 T13322 pobj p65-Thr435,of
R10511 T13324 T13321 prep by,phosphorylation
R10512 T13325 T13326 compound TNF-α,[
R10513 T13326 T13328 nmod [,]
R10514 T13327 T13328 nummod 39,]
R10515 T13328 T13324 pobj ],by
R10516 T13329 T13332 punct ",",indicate
R10517 T13330 T13331 poss our,findings
R10518 T13331 T13332 nsubj findings,indicate
R10519 T13332 T13332 ROOT indicate,indicate
R10520 T13333 T13341 mark that,play
R10521 T13334 T13336 amod TNF-α-mediated,phosphorylation
R10522 T13335 T13336 compound p65-Thr435,phosphorylation
R10523 T13336 T13341 nsubj phosphorylation,play
R10524 T13337 T13336 prep in,phosphorylation
R10525 T13338 T13339 amod endothelial,cells
R10526 T13339 T13337 pobj cells,in
R10527 T13340 T13341 aux may,play
R10528 T13341 T13332 ccomp play,indicate
R10529 T13342 T13344 det an,role
R10530 T13343 T13344 amod important,role
R10531 T13344 T13341 dobj role,play
R10532 T13345 T13341 prep in,play
R10533 T13346 T13348 amod vasogenic,induction
R10534 T13347 T13348 compound edema,induction
R10535 T13348 T13345 pobj induction,in
R10536 T13349 T13341 prep via,play
R10537 T13350 T13351 compound SMI-71,degradation
R10538 T13351 T13349 pobj degradation,via
R10539 T13352 T13351 cc or,degradation
R10540 T13353 T13355 poss its,dysfunction
R10541 T13354 T13355 amod posttranslational,dysfunction
R10542 T13355 T13351 conj dysfunction,degradation
R10543 T13356 T13355 acl influencing,dysfunction
R10544 T13357 T13358 compound BBB,permeability
R10545 T13358 T13356 dobj permeability,influencing
R10546 T13359 T13332 punct .,indicate

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T13972 1230-1238 Positive_regulation denotes mediated
T13971 1230-1238 Positive_regulation denotes mediated
T13970 1250-1265 Phosphorylation denotes phosphorylation
T13969 1250-1265 Phosphorylation denotes phosphorylation
T13968 1152-1167 Phosphorylation denotes phosphorylation
T13967 1152-1167 Phosphorylation denotes phosphorylation
T13966 1243-1249 Protein denotes Thr435
T13965 1239-1242 Protein denotes p65
T13964 1224-1229 Protein denotes TNF-α
T13963 1185-1190 Protein denotes TNF-α
T13962 1175-1181 Protein denotes Thr435
T13961 1171-1174 Protein denotes p65
T13960 1057-1065 Protein denotes sTNFp55R
T13959 93-99 Positive_regulation denotes occurs
T13958 77-92 Phosphorylation denotes phosphorylation
T13957 4-19 Phosphorylation denotes phosphorylation
T13956 4-19 Phosphorylation denotes phosphorylation
T13955 73-76 Protein denotes p65
T13954 23-28 Protein denotes NF-κB
T13953 0-3 Protein denotes p65
R11046 T13958 T13959 themeOf phosphorylation,occurs
R11048 T13961 T13967 themeOf p65,phosphorylation
R11053 T13962 T13968 themeOf Thr435,phosphorylation
R11054 T13965 T13969 themeOf p65,phosphorylation
R11055 T13966 T13970 themeOf Thr435,phosphorylation
R11056 T13953 T13956 themeOf p65,phosphorylation
R11057 T13969 T13971 themeOf phosphorylation,mediated
R11058 T13954 T13957 themeOf NF-κB,phosphorylation
R11059 T13955 T13958 themeOf p65,phosphorylation
R11060 T13970 T13972 themeOf phosphorylation,mediated
R11061 T13971 T13964 Cause mediated,TNF-α
R11062 T13972 T13964 Cause mediated,TNF-α

testone

Id Subject Object Predicate Lexical cue
T11388 1239-1242 Protein denotes p65
T11387 1224-1229 Protein denotes TNF-α
T11386 1185-1190 Protein denotes TNF-α
T11385 1171-1174 Protein denotes p65
T11384 1058-1065 Protein denotes TNFp55R
T11383 167-170 Protein denotes p65
T11382 73-76 Protein denotes p65
T11381 0-3 Protein denotes p65
T11439 1354-1365 Protein_catabolism denotes degradation
T11438 1333-1342 Positive_regulation denotes induction
T11437 1250-1265 Phosphorylation denotes phosphorylation
T11436 1230-1238 Positive_regulation denotes mediated
T11435 1152-1167 Phosphorylation denotes phosphorylation
T11434 652-666 Negative_regulation denotes neutralization
T11433 474-478 Negative_regulation denotes lost
T11432 460-470 Gene_expression denotes expression
T11431 309-319 Gene_expression denotes expression
T11430 131-138 Entity denotes nucleus
T11429 77-92 Phosphorylation denotes phosphorylation
T11428 29-37 Positive_regulation denotes enhances
T11427 4-19 Phosphorylation denotes phosphorylation
R9039 T11381 T11427 themeOf p65,phosphorylation
R9040 T11382 T11429 themeOf p65,phosphorylation
R9041 T11385 T11435 themeOf p65,phosphorylation
R9042 T11387 T11436 causeOf TNF-α,mediated
R9043 T11388 T11437 themeOf p65,phosphorylation
R9063 T11427 T11428 causeOf phosphorylation,enhances
R9064 T11429 T11428 themeOf phosphorylation,enhances
R9065 T11432 T11433 themeOf expression,lost
R9066 T11437 T11436 themeOf phosphorylation,mediated

test3

Id Subject Object Predicate Lexical cue
T11548 1250-1265 Phosphorylation denotes phosphorylation
T11547 1239-1242 Protein denotes p65
T11546 1230-1238 Positive_regulation denotes mediated
T11545 1224-1229 Protein denotes TNF-α
T11544 1185-1190 Protein denotes TNF-α
T11543 1171-1174 Protein denotes p65
T11542 1152-1167 Phosphorylation denotes phosphorylation
T11541 1057-1065 Protein denotes sTNFp55R
T11540 460-470 Gene_expression denotes expression
T11539 309-319 Gene_expression denotes expression
T11538 167-170 Protein denotes p65
T11537 131-138 Entity denotes nucleus
T11536 77-92 Phosphorylation denotes phosphorylation
T11535 73-76 Protein denotes p65
T11534 4-19 Phosphorylation denotes phosphorylation
T11533 0-3 Protein denotes p65
T11486 1239-1242 Protein denotes p65
T11485 1224-1229 Protein denotes TNF-α
T11484 1185-1190 Protein denotes TNF-α
T11483 1171-1174 Protein denotes p65
T11482 1058-1065 Protein denotes TNFp55R
T11481 167-170 Protein denotes p65
T11480 73-76 Protein denotes p65
T11479 0-3 Protein denotes p65
R9094 T11533 T11534 themeOf p65,phosphorylation
R9095 T11535 T11536 themeOf p65,phosphorylation
R9096 T11543 T11542 themeOf p65,phosphorylation
R9097 T11545 T11546 causeOf TNF-α,mediated
R9098 T11547 T11548 themeOf p65,phosphorylation
R9099 T11548 T11546 themeOf phosphorylation,mediated