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PMC:3312845 / 29963-30107 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22240205-15653325-63147455 140-142 15653325 denotes 30

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12216 142-143 -RRB- denotes ]
T12215 140-142 CD denotes 30
T12214 139-140 -LRB- denotes [
T12213 131-138 NN denotes nucleus
T12212 127-130 DT denotes the
T12211 124-126 CC denotes or
T12210 114-123 NN denotes cytoplasm
T12209 110-113 DT denotes the
T12208 103-109 CC denotes either
T12207 100-102 IN denotes in
T12206 93-99 VB denotes occurs
T12205 77-92 NN denotes phosphorylation
T12204 73-76 NN denotes p65
T12203 69-72 CC denotes and
T12202 67-68 -COMMA- denotes ,
T12201 58-67 NN denotes potential
T12200 42-57 NN denotes transactivation
T12199 38-41 PRP-DOLLAR- denotes its
T12198 29-37 VB denotes enhances
T12197 23-28 NN denotes NF-κB
T12196 20-22 IN denotes of
T12195 4-19 NN denotes phosphorylation
T12194 0-3 NN denotes p65
R9445 T12195 T12194 arg1Of phosphorylation,p65
R9446 T12195 T12196 arg1Of phosphorylation,of
R9447 T12195 T12198 arg1Of phosphorylation,enhances
R9448 T12197 T12196 arg2Of NF-κB,of
R9449 T12198 T12203 arg1Of enhances,and
R9450 T12201 T12198 arg2Of potential,enhances
R9451 T12201 T12199 arg1Of potential,its
R9452 T12201 T12200 arg1Of potential,transactivation
R9453 T12203 T12202 arg1Of and,","
R9454 T12205 T12204 arg1Of phosphorylation,p65
R9455 T12205 T12206 arg1Of phosphorylation,occurs
R9456 T12206 T12203 arg2Of occurs,and
R9457 T12206 T12207 arg1Of occurs,in
R9458 T12206 T12214 arg1Of occurs,[
R9459 T12210 T12209 arg1Of cytoplasm,the
R9460 T12210 T12211 arg1Of cytoplasm,or
R9461 T12211 T12207 arg2Of or,in
R9462 T12211 T12208 arg1Of or,either
R9463 T12213 T12211 arg2Of nucleus,or
R9464 T12213 T12212 arg1Of nucleus,the
R9465 T12215 T12214 arg2Of 30,[
R9466 T12216 T12214 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11673 73-76 Protein denotes p65
T11672 0-3 Protein denotes p65

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T12867 73-76 http://www.uniprot.org/uniprot/P21579 denotes p65
T12866 0-3 http://www.uniprot.org/uniprot/P21579 denotes p65
T12848 73-76 http://www.uniprot.org/uniprot/Q04206 denotes p65
T12847 0-3 http://www.uniprot.org/uniprot/Q04206 denotes p65

GO-BP

Id Subject Object Predicate Lexical cue
T11732 42-57 http://purl.obolibrary.org/obo/GO_2000144 denotes transactivation
T11720 77-92 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T11719 4-19 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T11758 131-138 http://purl.obolibrary.org/obo/GO_0005634 denotes nucleus
T11757 114-123 http://purl.obolibrary.org/obo/GO_0005737 denotes cytoplasm

sentences

Id Subject Object Predicate Lexical cue
T11636 0-144 Sentence denotes p65 phosphorylation of NF-κB enhances its transactivation potential, and p65 phosphorylation occurs in either the cytoplasm or the nucleus [30].
T221 0-144 Sentence denotes p65 phosphorylation of NF-κB enhances its transactivation potential, and p65 phosphorylation occurs in either the cytoplasm or the nucleus [30].

simple1

Id Subject Object Predicate Lexical cue
T11926 73-76 Protein denotes p65
T11925 0-3 Protein denotes p65

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14239 77-92 Phosphorylation denotes phosphorylation
T14238 93-99 Positive_regulation denotes occurs
T14237 29-37 Positive_regulation denotes enhances
T14236 4-19 Phosphorylation denotes phosphorylation
T14195 73-76 Protein denotes p65
T14194 0-3 Protein denotes p65
R11153 T14194 T14236 themeOf p65,phosphorylation
R11154 T14195 T14239 themeOf p65,phosphorylation
R11190 T14236 T14237 themeOf phosphorylation,enhances
R11191 T14239 T14238 themeOf phosphorylation,occurs

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T13840 77-92 Phosphorylation denotes phosphorylation
T13839 4-19 Phosphorylation denotes phosphorylation
T13798 73-76 Protein denotes p65
T13797 0-3 Protein denotes p65
R10973 T13797 T13839 themeOf p65,phosphorylation
R10975 T13798 T13840 themeOf p65,phosphorylation

DLUT931

Id Subject Object Predicate Lexical cue
T13916 77-92 Phosphorylation denotes phosphorylation
T13915 4-19 Phosphorylation denotes phosphorylation
T13873 73-76 Protein denotes p65
T13872 0-3 Protein denotes p65
R10989 T13872 T13915 themeOf p65,phosphorylation
R10991 T13873 T13916 themeOf p65,phosphorylation

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T14336 110-123 Entity denotes the cytoplasm
T14327 0-3 Protein denotes p65
T14297 127-143 Entity denotes the nucleus [30]
T14290 73-76 Protein denotes p65
T14275 20-28 Protein denotes of NF-κB
T14412 73-92 Phosphorylation denotes p65 phosphorylation
T14398 0-28 Phosphorylation denotes p65 phosphorylation of NF-κB
R11195 T14275 T14398 themeOf of NF-κB,p65 phosphorylation of NF-κB
R11199 T14290 T14412 themeOf p65,p65 phosphorylation
R11210 T14327 T14398 causeOf p65,p65 phosphorylation of NF-κB

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T13155 143-144 . denotes .
T13154 142-143 NNP denotes ]
T13153 140-142 CD denotes 30
T13152 139-140 NNP denotes [
T13151 131-138 NN denotes nucleus
T13150 127-130 DT denotes the
T13149 124-126 CC denotes or
T13148 114-123 NN denotes cytoplasm
T13147 110-113 DT denotes the
T13146 103-109 CC denotes either
T13145 100-102 IN denotes in
T13144 93-99 VBZ denotes occurs
T13143 77-92 NN denotes phosphorylation
T13142 73-76 CD denotes p65
T13141 69-72 CC denotes and
T13140 67-68 , denotes ,
T13139 58-67 NN denotes potential
T13138 42-57 NN denotes transactivation
T13137 38-41 PRP$ denotes its
T13136 29-37 VBZ denotes enhances
T13135 23-28 JJ denotes NF-κB
T13134 20-22 IN denotes of
T13133 4-19 NN denotes phosphorylation
T13132 0-3 NNS denotes p65
R10319 T13132 T13133 compound p65,phosphorylation
R10320 T13133 T13136 nsubj phosphorylation,enhances
R10321 T13134 T13133 prep of,phosphorylation
R10322 T13135 T13134 pobj NF-κB,of
R10323 T13136 T13136 ROOT enhances,enhances
R10324 T13137 T13139 poss its,potential
R10325 T13138 T13139 compound transactivation,potential
R10326 T13139 T13136 dobj potential,enhances
R10327 T13140 T13136 punct ",",enhances
R10328 T13141 T13136 cc and,enhances
R10329 T13142 T13144 nummod p65,occurs
R10330 T13143 T13144 nsubj phosphorylation,occurs
R10331 T13144 T13136 conj occurs,enhances
R10332 T13145 T13144 prep in,occurs
R10333 T13146 T13148 preconj either,cytoplasm
R10334 T13147 T13148 det the,cytoplasm
R10335 T13148 T13145 pobj cytoplasm,in
R10336 T13149 T13148 cc or,cytoplasm
R10337 T13150 T13151 det the,nucleus
R10338 T13151 T13148 conj nucleus,cytoplasm
R10339 T13152 T13154 quantmod [,]
R10340 T13153 T13154 nummod 30,]
R10341 T13154 T13151 appos ],nucleus
R10342 T13155 T13144 punct .,occurs

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T13959 93-99 Positive_regulation denotes occurs
T13958 77-92 Phosphorylation denotes phosphorylation
T13957 4-19 Phosphorylation denotes phosphorylation
T13956 4-19 Phosphorylation denotes phosphorylation
T13955 73-76 Protein denotes p65
T13954 23-28 Protein denotes NF-κB
T13953 0-3 Protein denotes p65
R11046 T13958 T13959 themeOf phosphorylation,occurs
R11056 T13953 T13956 themeOf p65,phosphorylation
R11058 T13954 T13957 themeOf NF-κB,phosphorylation
R11059 T13955 T13958 themeOf p65,phosphorylation

testone

Id Subject Object Predicate Lexical cue
T11382 73-76 Protein denotes p65
T11381 0-3 Protein denotes p65
T11430 131-138 Entity denotes nucleus
T11429 77-92 Phosphorylation denotes phosphorylation
T11428 29-37 Positive_regulation denotes enhances
T11427 4-19 Phosphorylation denotes phosphorylation
R9039 T11381 T11427 themeOf p65,phosphorylation
R9040 T11382 T11429 themeOf p65,phosphorylation
R9063 T11427 T11428 causeOf phosphorylation,enhances
R9064 T11429 T11428 themeOf phosphorylation,enhances

test3

Id Subject Object Predicate Lexical cue
T11537 131-138 Entity denotes nucleus
T11536 77-92 Phosphorylation denotes phosphorylation
T11535 73-76 Protein denotes p65
T11534 4-19 Phosphorylation denotes phosphorylation
T11533 0-3 Protein denotes p65
T11480 73-76 Protein denotes p65
T11479 0-3 Protein denotes p65
R9094 T11533 T11534 themeOf p65,phosphorylation
R9095 T11535 T11536 themeOf p65,phosphorylation