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PMC:3312845 / 28482-28717 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12001 222-234 NN denotes infiltration
T12000 211-221 NN denotes neutrophil
T11999 208-210 IN denotes by
T11998 199-207 VB denotes followed
T11997 189-198 NN denotes formation
T11996 183-188 NN denotes edema
T11995 173-182 JJ denotes vasogenic
T11994 170-172 TO denotes to
T11993 162-169 JJ denotes related
T11992 159-161 VB denotes be
T11991 155-158 MD denotes may
T11990 149-154 WDT denotes which
T11989 147-148 -COMMA- denotes ,
T11988 145-147 NN denotes SE
T11987 135-144 VB denotes following
T11986 132-134 NN denotes PC
T11985 128-131 DT denotes the
T11984 125-127 IN denotes in
T11983 109-124 NN denotes phosphorylation
T11982 103-108 NN denotes NF-κB
T11981 100-102 IN denotes of
T11980 90-99 NN denotes responses
T11979 81-89 JJ denotes specific
T11978 72-80 JJ denotes cellular
T11977 65-71 VB denotes showed
T11976 55-64 NN denotes signaling
T11975 49-54 NN denotes TNF-α
T11974 44-48 IN denotes that
T11973 40-43 VB denotes are
T11972 34-39 NN denotes study
T11971 26-33 JJ denotes present
T11970 22-25 DT denotes the
T11969 19-21 IN denotes in
T11968 10-18 NN denotes findings
T11967 4-9 JJ denotes major
T11966 0-3 DT denotes The
R9212 T11968 T11966 arg1Of findings,The
R9213 T11968 T11967 arg1Of findings,major
R9214 T11968 T11969 arg1Of findings,in
R9215 T11968 T11973 arg1Of findings,are
R9216 T11972 T11969 arg2Of study,in
R9217 T11972 T11970 arg1Of study,the
R9218 T11972 T11971 arg1Of study,present
R9219 T11973 T11984 arg1Of are,in
R9220 T11976 T11974 arg1Of signaling,that
R9221 T11976 T11975 arg1Of signaling,TNF-α
R9222 T11976 T11977 arg1Of signaling,showed
R9223 T11977 T11973 arg2Of showed,are
R9224 T11979 T11978 arg1Of specific,cellular
R9225 T11980 T11977 arg2Of responses,showed
R9226 T11980 T11979 arg1Of responses,specific
R9227 T11980 T11981 arg1Of responses,of
R9228 T11983 T11981 arg2Of phosphorylation,of
R9229 T11983 T11982 arg1Of phosphorylation,NF-κB
R9230 T11986 T11984 arg2Of PC,in
R9231 T11986 T11985 arg1Of PC,the
R9232 T11986 T11987 arg1Of PC,following
R9233 T11986 T11989 arg1Of PC,","
R9234 T11986 T11990 arg1Of PC,which
R9235 T11986 T11991 arg1Of PC,may
R9236 T11986 T11992 arg1Of PC,be
R9237 T11986 T11993 arg1Of PC,related
R9238 T11988 T11987 arg2Of SE,following
R9239 T11992 T11991 arg2Of be,may
R9240 T11993 T11992 arg2Of related,be
R9241 T11993 T11994 arg1Of related,to
R9242 T11997 T11994 arg2Of formation,to
R9243 T11997 T11995 arg1Of formation,vasogenic
R9244 T11997 T11996 arg1Of formation,edema
R9245 T11997 T11998 arg2Of formation,followed
R9246 T12001 T11998 arg1Of infiltration,followed
R9247 T12001 T11999 arg2Of infiltration,by
R9248 T12001 T12000 arg1Of infiltration,neutrophil

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11661 49-54 Protein denotes TNF-α

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T12834 49-54 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T12821 49-52 http://www.uniprot.org/uniprot/P01375 denotes TNF

GO-BP

Id Subject Object Predicate Lexical cue
T11727 189-198 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T11718 109-124 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T11717 72-80 http://purl.obolibrary.org/obo/GO_0007349 denotes cellular
T11713 55-64 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

sentences

Id Subject Object Predicate Lexical cue
T11625 0-235 Sentence denotes The major findings in the present study are that TNF-α signaling showed cellular specific responses of NF-κB phosphorylation in the PC following SE, which may be related to vasogenic edema formation followed by neutrophil infiltration.
T210 0-235 Sentence denotes The major findings in the present study are that TNF-α signaling showed cellular specific responses of NF-κB phosphorylation in the PC following SE, which may be related to vasogenic edema formation followed by neutrophil infiltration.

simple1

Id Subject Object Predicate Lexical cue
T11914 49-54 Protein denotes TNF-α

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14183 49-54 Protein denotes TNF-α

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T13786 49-54 Protein denotes TNF-α

DLUT931

Id Subject Object Predicate Lexical cue
T13861 49-54 Protein denotes TNF-α

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T14335 211-221 Entity denotes neutrophil
T14273 145-147 Entity denotes SE
T14403 103-124 Phosphorylation denotes NF-κB phosphorylation
T14402 49-64 Positive_regulation denotes TNF-α signaling
T14375 128-134 Entity denotes the PC
T14374 103-108 Protein denotes NF-κB
T14368 49-54 Protein denotes TNF-α
R11215 T14368 T14402 causeOf TNF-α,TNF-α signaling
R11220 T14374 T14403 themeOf NF-κB,NF-κB phosphorylation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T12929 234-235 . denotes .
T12928 222-234 NN denotes infiltration
T12927 211-221 NN denotes neutrophil
T12926 208-210 IN denotes by
T12925 199-207 VBN denotes followed
T12924 189-198 NN denotes formation
T12923 183-188 NN denotes edema
T12922 173-182 JJ denotes vasogenic
T12921 170-172 TO denotes to
T12920 162-169 VBN denotes related
T12919 159-161 VB denotes be
T12918 155-158 MD denotes may
T12917 149-154 WDT denotes which
T12916 147-148 , denotes ,
T12915 145-147 NNP denotes SE
T12914 135-144 VBG denotes following
T12913 132-134 NN denotes PC
T12912 128-131 DT denotes the
T12911 125-127 IN denotes in
T12910 109-124 NN denotes phosphorylation
T12909 103-108 JJ denotes NF-κB
T12908 100-102 IN denotes of
T12907 90-99 NNS denotes responses
T12906 81-89 JJ denotes specific
T12905 72-80 JJ denotes cellular
T12904 65-71 VBD denotes showed
T12903 55-64 VBG denotes signaling
T12902 49-54 JJ denotes TNF-α
T12901 44-48 IN denotes that
T12900 40-43 VBP denotes are
T12899 34-39 NN denotes study
T12898 26-33 JJ denotes present
T12897 22-25 DT denotes the
T12896 19-21 IN denotes in
T12895 10-18 NNS denotes findings
T12894 4-9 JJ denotes major
T12893 0-3 DT denotes The
R10080 T12893 T12895 det The,findings
R10081 T12894 T12895 amod major,findings
R10082 T12895 T12900 nsubj findings,are
R10083 T12896 T12895 prep in,findings
R10084 T12897 T12899 det the,study
R10085 T12898 T12899 amod present,study
R10086 T12899 T12896 pobj study,in
R10087 T12900 T12900 ROOT are,are
R10088 T12901 T12904 mark that,showed
R10089 T12902 T12904 nsubj TNF-α,showed
R10090 T12903 T12902 acl signaling,TNF-α
R10091 T12904 T12900 ccomp showed,are
R10092 T12905 T12907 amod cellular,responses
R10093 T12906 T12907 amod specific,responses
R10094 T12907 T12904 dobj responses,showed
R10095 T12908 T12907 prep of,responses
R10096 T12909 T12910 amod NF-κB,phosphorylation
R10097 T12910 T12908 pobj phosphorylation,of
R10098 T12911 T12910 prep in,phosphorylation
R10099 T12912 T12913 det the,PC
R10100 T12913 T12911 pobj PC,in
R10101 T12914 T12907 prep following,responses
R10102 T12915 T12914 pobj SE,following
R10103 T12916 T12915 punct ",",SE
R10104 T12917 T12920 nsubjpass which,related
R10105 T12918 T12920 aux may,related
R10106 T12919 T12920 auxpass be,related
R10107 T12920 T12915 relcl related,SE
R10108 T12921 T12920 prep to,related
R10109 T12922 T12924 amod vasogenic,formation
R10110 T12923 T12924 compound edema,formation
R10111 T12924 T12921 pobj formation,to
R10112 T12925 T12924 acl followed,formation
R10113 T12926 T12925 agent by,followed
R10114 T12927 T12928 compound neutrophil,infiltration
R10115 T12928 T12926 pobj infiltration,by
R10116 T12929 T12900 punct .,are

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T13937 109-124 Phosphorylation denotes phosphorylation
T13936 103-108 Protein denotes NF-κB
T13935 49-54 Protein denotes TNF-α
R11047 T13936 T13937 themeOf NF-κB,phosphorylation

testone

Id Subject Object Predicate Lexical cue
T11370 49-54 Protein denotes TNF-α
T11423 135-144 Positive_regulation denotes following
T11422 109-124 Phosphorylation denotes phosphorylation

test3

Id Subject Object Predicate Lexical cue
T11521 109-124 Phosphorylation denotes phosphorylation
T11520 49-54 Protein denotes TNF-α
T11468 49-54 Protein denotes TNF-α