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PMC:3312845 / 24410-24631 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9603 196-203 NN denotes Figures
T9602 194-195 -COLON- denotes ;
T9601 190-194 CD denotes 0.05
T9600 188-189 SYM denotes <
T9599 186-187 NN denotes p
T9598 185-186 -LRB- denotes (
T9597 176-184 NN denotes infusion
T9596 169-175 NN denotes saline
T9595 166-168 TO denotes to
T9594 157-165 VB denotes compared
T9593 154-156 IN denotes as
T9592 152-153 -COMMA- denotes ,
T9591 150-152 NN denotes SE
T9590 140-149 VB denotes following
T9589 134-139 NN denotes cells
T9588 122-133 JJ denotes endothelial
T9587 119-121 IN denotes in
T9586 102-118 NN denotes immunoreactivity
T9585 95-101 NN denotes SMI-71
T9584 85-94 VB denotes preserved
T9583 81-84 CC denotes and
T9582 65-80 NN denotes phosphorylation
T9581 54-64 NN denotes p65-Thr435
T9580 43-53 VB denotes alleviated
T9579 31-42 RB denotes effectively
T9578 22-30 NN denotes infusion
T9577 13-21 NN denotes sTNFp55R
T9576 11-12 -COMMA- denotes ,
T9575 3-11 NN denotes addition
T9574 0-2 IN denotes In
T9609 219-220 -RRB- denotes )
T9608 217-219 NN denotes 5F
T9607 213-216 CC denotes and
T9606 210-212 NN denotes 5D
T9605 208-209 -COMMA- denotes ,
T9604 204-208 NN denotes 4A-B
R7761 T9575 T9574 arg2Of addition,In
R7762 T9578 T9577 arg1Of infusion,sTNFp55R
R7763 T9578 T9580 arg1Of infusion,alleviated
R7764 T9580 T9574 arg1Of alleviated,In
R7765 T9580 T9576 arg1Of alleviated,","
R7766 T9580 T9579 arg1Of alleviated,effectively
R7767 T9580 T9592 arg1Of alleviated,","
R7768 T9580 T9593 arg1Of alleviated,as
R7769 T9582 T9581 arg1Of phosphorylation,p65-Thr435
R7770 T9582 T9583 arg1Of phosphorylation,and
R7771 T9583 T9580 arg2Of and,alleviated
R7772 T9583 T9587 arg1Of and,in
R7773 T9586 T9583 arg2Of immunoreactivity,and
R7774 T9586 T9584 arg2Of immunoreactivity,preserved
R7775 T9586 T9585 arg1Of immunoreactivity,SMI-71
R7776 T9589 T9587 arg2Of cells,in
R7777 T9589 T9588 arg1Of cells,endothelial
R7778 T9589 T9590 arg1Of cells,following
R7779 T9591 T9590 arg2Of SE,following
R7780 T9594 T9593 arg2Of compared,as
R7781 T9594 T9595 arg1Of compared,to
R7782 T9597 T9595 arg2Of infusion,to
R7783 T9597 T9596 arg1Of infusion,saline
R7784 T9597 T9598 arg1Of infusion,(
R7785 T9599 T9598 arg2Of p,(
R7786 T9599 T9600 arg1Of p,<
R7787 T9599 T9601 arg1Of p,0.05
R7788 T9599 T9602 arg1Of p,;
R7789 T9604 T9605 arg1Of 4A-B,","
R7790 T9605 T9607 arg1Of ",",and
R7791 T9606 T9605 arg2Of 5D,","
R7792 T9607 T9602 arg2Of and,;
R7793 T9607 T9603 arg1Of and,Figures
R7794 T9608 T9607 arg2Of 5F,and
R7795 T9609 T9598 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T9425 54-57 Protein denotes p65
T9424 14-21 Protein denotes TNFp55R

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9615 54-57 http://www.uniprot.org/uniprot/P21579 denotes p65
T9612 54-57 http://www.uniprot.org/uniprot/Q04206 denotes p65

GO-BP

Id Subject Object Predicate Lexical cue
T9428 65-80 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T9429 134-139 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T9409 0-221 Sentence denotes In addition, sTNFp55R infusion effectively alleviated p65-Thr435 phosphorylation and preserved SMI-71 immunoreactivity in endothelial cells following SE, as compared to saline infusion (p < 0.05; Figures 4A-B, 5D and 5F).
T186 0-221 Sentence denotes In addition, sTNFp55R infusion effectively alleviated p65-Thr435 phosphorylation and preserved SMI-71 immunoreactivity in endothelial cells following SE, as compared to saline infusion (p < 0.05; Figures 4A-B, 5D and 5F).

simple1

Id Subject Object Predicate Lexical cue
T9451 54-57 Protein denotes p65
T9450 14-21 Protein denotes TNFp55R

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T9833 43-53 Negative_regulation denotes alleviated
T9832 65-80 Phosphorylation denotes phosphorylation
T9828 54-57 Protein denotes p65
T9827 14-21 Protein denotes TNFp55R
R7988 T9828 T9832 themeOf p65,phosphorylation
R7990 T9832 T9833 themeOf phosphorylation,alleviated

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T9788 43-53 Negative_regulation denotes alleviated
T9787 65-80 Phosphorylation denotes phosphorylation
T9783 54-57 Protein denotes p65
T9782 14-21 Protein denotes TNFp55R
R7963 T9782 T9788 causeOf TNFp55R,alleviated
R7964 T9783 T9787 themeOf p65,phosphorylation
R7966 T9787 T9788 themeOf phosphorylation,alleviated

DLUT931

Id Subject Object Predicate Lexical cue
T9799 43-53 Negative_regulation denotes alleviated
T9798 140-149 Positive_regulation denotes following
T9797 65-80 Phosphorylation denotes phosphorylation
T9793 54-57 Protein denotes p65
T9792 14-21 Protein denotes TNFp55R
R7969 T9793 T9797 themeOf p65,phosphorylation
R7971 T9797 T9798 themeOf phosphorylation,following
R7972 T9797 T9799 themeOf phosphorylation,alleviated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T9851 54-64 Protein denotes p65-Thr435
T9850 54-64 Entity denotes p65-Thr435
T9846 14-17 Protein denotes TNF
T9844 13-30 Entity denotes sTNFp55R infusion
T9842 122-139 Entity denotes endothelial cells
T9837 150-152 Protein denotes SE
T9834 169-220 Entity denotes saline infusion (p < 0.05; Figures 4A-B, 5D and 5F)

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9779 220-221 . denotes .
T9778 219-220 -RRB- denotes )
T9777 217-219 NNP denotes 5F
T9776 213-216 CC denotes and
T9775 210-212 NNP denotes 5D
T9774 208-209 , denotes ,
T9773 204-208 NN denotes 4A-B
T9772 196-203 NNS denotes Figures
T9771 194-195 : denotes ;
T9770 190-194 CD denotes 0.05
T9769 188-189 FW denotes <
T9768 186-187 FW denotes p
T9767 185-186 -LRB- denotes (
T9766 176-184 NN denotes infusion
T9765 169-175 VB denotes saline
T9764 166-168 TO denotes to
T9763 157-165 VBN denotes compared
T9762 154-156 IN denotes as
T9761 152-153 , denotes ,
T9760 150-152 NNP denotes SE
T9759 140-149 VBG denotes following
T9758 134-139 NNS denotes cells
T9757 122-133 JJ denotes endothelial
T9756 119-121 IN denotes in
T9755 102-118 NN denotes immunoreactivity
T9754 95-101 NNP denotes SMI-71
T9753 85-94 VBD denotes preserved
T9752 81-84 CC denotes and
T9751 65-80 NN denotes phosphorylation
T9750 54-64 JJ denotes p65-Thr435
T9749 43-53 VBD denotes alleviated
T9748 31-42 RB denotes effectively
T9747 22-30 NN denotes infusion
T9746 13-21 JJ denotes sTNFp55R
T9745 11-12 , denotes ,
T9744 3-11 NN denotes addition
T9743 0-2 IN denotes In
R7923 T9743 T9749 prep In,alleviated
R7924 T9744 T9743 pobj addition,In
R7925 T9745 T9749 punct ",",alleviated
R7926 T9746 T9747 compound sTNFp55R,infusion
R7927 T9747 T9749 nsubj infusion,alleviated
R7928 T9748 T9749 advmod effectively,alleviated
R7929 T9749 T9749 ROOT alleviated,alleviated
R7930 T9750 T9751 amod p65-Thr435,phosphorylation
R7931 T9751 T9749 dobj phosphorylation,alleviated
R7932 T9752 T9749 cc and,alleviated
R7933 T9753 T9749 conj preserved,alleviated
R7934 T9754 T9755 compound SMI-71,immunoreactivity
R7935 T9755 T9753 dobj immunoreactivity,preserved
R7936 T9756 T9755 prep in,immunoreactivity
R7937 T9757 T9758 amod endothelial,cells
R7938 T9758 T9756 pobj cells,in
R7939 T9759 T9758 acl following,cells
R7940 T9760 T9759 dobj SE,following
R7941 T9761 T9753 punct ",",preserved
R7942 T9762 T9753 prep as,preserved
R7943 T9763 T9762 prep compared,as
R7944 T9764 T9763 prep to,compared
R7945 T9765 T9766 amod saline,infusion
R7946 T9766 T9764 pobj infusion,to
R7947 T9767 T9766 punct (,infusion
R7948 T9768 T9773 advmod p,4A-B
R7949 T9769 T9770 nmod <,0.05
R7950 T9770 T9768 nummod 0.05,p
R7951 T9771 T9768 punct ;,p
R7952 T9772 T9773 compound Figures,4A-B
R7953 T9773 T9766 appos 4A-B,infusion
R7954 T9774 T9773 punct ",",4A-B
R7955 T9775 T9773 conj 5D,4A-B
R7956 T9776 T9775 cc and,5D
R7957 T9777 T9775 conj 5F,5D
R7958 T9778 T9775 punct ),5D
R7959 T9779 T9749 punct .,alleviated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T9447 65-80 Phosphorylation denotes phosphorylation
T9446 65-80 Phosphorylation denotes phosphorylation
T9445 65-80 Phosphorylation denotes phosphorylation
T9444 58-64 Protein denotes Thr435
T9443 54-57 Protein denotes p65
T9442 13-21 Protein denotes sTNFp55R
R7639 T9442 T9445 themeOf sTNFp55R,phosphorylation
R7640 T9443 T9446 themeOf p65,phosphorylation
R7641 T9444 T9447 themeOf Thr435,phosphorylation

testone

Id Subject Object Predicate Lexical cue
T9388 140-149 Positive_regulation denotes following
T9387 65-80 Phosphorylation denotes phosphorylation
T9386 43-53 Positive_regulation denotes alleviated
T9378 54-57 Protein denotes p65
T9377 14-21 Protein denotes TNFp55R
R7614 T9378 T9387 themeOf p65,phosphorylation
R7616 T9387 T9386 themeOf phosphorylation,alleviated

test3

Id Subject Object Predicate Lexical cue
T9402 65-80 Phosphorylation denotes phosphorylation
T9401 54-57 Protein denotes p65
T9400 43-53 Negative_regulation denotes alleviated
T9399 13-21 Protein denotes sTNFp55R
T9392 54-57 Protein denotes p65
T9391 14-21 Protein denotes TNFp55R
R7620 T9399 T9400 causeOf sTNFp55R,alleviated
R7621 T9401 T9402 themeOf p65,phosphorylation
R7622 T9402 T9400 themeOf phosphorylation,alleviated