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PMC:3312845 / 23715-24631 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22240205-21029730-63147432 122-123 21029730 denotes 5

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9603 891-898 NN denotes Figures
T9602 889-890 -COLON- denotes ;
T9601 885-889 CD denotes 0.05
T9600 883-884 SYM denotes <
T9599 881-882 NN denotes p
T9598 880-881 -LRB- denotes (
T9597 871-879 NN denotes infusion
T9596 864-870 NN denotes saline
T9595 861-863 TO denotes to
T9594 852-860 VB denotes compared
T9593 849-851 IN denotes as
T9592 847-848 -COMMA- denotes ,
T9591 845-847 NN denotes SE
T9590 835-844 VB denotes following
T9589 829-834 NN denotes cells
T9588 817-828 JJ denotes endothelial
T9587 814-816 IN denotes in
T9586 797-813 NN denotes immunoreactivity
T9585 790-796 NN denotes SMI-71
T9584 780-789 VB denotes preserved
T9583 776-779 CC denotes and
T9582 760-775 NN denotes phosphorylation
T9581 749-759 NN denotes p65-Thr435
T9580 738-748 VB denotes alleviated
T9579 726-737 RB denotes effectively
T9578 717-725 NN denotes infusion
T9577 708-716 NN denotes sTNFp55R
T9576 706-707 -COMMA- denotes ,
T9575 698-706 NN denotes addition
T9574 695-697 IN denotes In
T9573 692-693 -RRB- denotes )
T9572 690-692 NN denotes 4C
T9571 683-689 NN denotes Figure
T9570 681-682 -COLON- denotes ;
T9569 677-681 CD denotes 0.05
T9568 675-676 SYM denotes <
T9567 673-674 NN denotes p
T9566 672-673 -LRB- denotes (
T9565 664-671 CD denotes -0.6324
T9564 661-663 IN denotes of
T9563 649-660 NN denotes correlation
T9562 646-648 IN denotes of
T9561 634-645 NN denotes coefficient
T9560 627-633 JJ denotes linear
T9559 625-626 DT denotes a
T9558 620-624 IN denotes with
T9557 604-619 NN denotes phosphorylation
T9556 593-603 NN denotes p65-Thr435
T9555 590-592 TO denotes to
T9554 579-589 VB denotes correlated
T9553 569-578 RB denotes inversely
T9552 565-568 VB denotes was
T9551 548-564 NN denotes immunoreactivity
T9550 541-547 NN denotes SMI-71
T9549 538-540 IN denotes of
T9548 531-537 NN denotes degree
T9547 527-530 DT denotes the
T9546 525-526 -COMMA- denotes ,
T9545 516-525 RB denotes Therefore
T9544 513-514 -RRB- denotes )
T9543 509-513 NN denotes 5C-D
T9542 501-508 NN denotes Figures
T9541 500-501 -LRB- denotes (
T9540 484-499 NN denotes phosphorylation
T9539 473-483 NN denotes p65-Thr435
T9538 463-472 VB denotes increased
T9537 460-462 IN denotes by
T9536 448-459 VB denotes accompanied
T9535 444-447 VB denotes was
T9534 437-443 NN denotes SMI-71
T9533 434-436 IN denotes in
T9532 424-433 NN denotes reduction
T9531 419-423 DT denotes This
T9530 415-417 NN denotes SE
T9529 405-414 VB denotes following
T9528 399-404 NN denotes edema
T9527 389-398 JJ denotes vasogenic
T9526 386-388 IN denotes of
T9525 379-385 NN denotes volume
T9524 374-378 IN denotes with
T9523 363-373 VB denotes correlated
T9522 346-362 NN denotes immunoreactivity
T9521 339-345 NN denotes SMI-71
T9520 336-338 IN denotes of
T9519 331-335 NN denotes loss
T9518 329-330 -COMMA- denotes ,
T9517 325-329 RB denotes Thus
T9516 322-323 -RRB- denotes )
T9515 318-322 CD denotes 0.05
T9514 316-317 SYM denotes <
T9513 314-315 NN denotes p
T9512 312-313 -COMMA- denotes ,
T9511 308-312 NN denotes 5C-E
T9510 304-307 CC denotes and
T9509 301-303 NN denotes 4B
T9508 293-300 NN denotes Figures
T9507 292-293 -LRB- denotes (
T9506 284-291 NN denotes animals
T9505 277-283 JJ denotes non-SE
T9504 274-276 TO denotes to
T9503 265-273 VB denotes compared
T9502 262-264 IN denotes as
T9501 259-261 NN denotes PC
T9500 255-258 DT denotes the
T9499 252-254 IN denotes of
T9498 245-251 CD denotes III/IV
T9497 239-244 NN denotes layer
T9496 236-238 IN denotes in
T9495 227-235 VB denotes detected
T9494 223-226 VB denotes was
T9493 206-222 NN denotes immunoreactivity
T9492 199-205 NN denotes SMI-71
T9491 196-198 IN denotes of
T9490 191-195 NN denotes loss
T9489 189-190 -COMMA- denotes ,
T9488 184-189 NN denotes group
T9487 169-183 JJ denotes saline-infused
T9486 165-168 DT denotes the
T9485 162-164 IN denotes of
T9484 154-161 NN denotes animals
T9483 151-153 NN denotes SE
T9482 142-150 JJ denotes day-post
T9481 140-141 CD denotes 1
T9480 137-139 IN denotes in
T9479 135-136 -COMMA- denotes ,
T9478 126-135 RB denotes Similarly
T9477 123-124 -RRB- denotes ]
T9476 122-123 CD denotes 5
T9475 121-122 -LRB- denotes [
T9474 118-120 NN denotes SE
T9473 112-117 IN denotes after
T9472 108-111 NN denotes day
T9471 106-107 CD denotes 1
T9470 103-105 NN denotes PC
T9469 99-102 DT denotes the
T9468 96-98 IN denotes in
T9467 86-95 VB denotes decreased
T9466 69-85 NN denotes immunoreactivity
T9465 67-68 -RRB- denotes )
T9464 60-67 NN denotes antigen
T9463 52-59 NN denotes barrier
T9462 40-51 JJ denotes endothelial
T9461 37-39 DT denotes an
T9460 36-37 -LRB- denotes (
T9459 29-35 NN denotes SMI-71
T9458 24-28 IN denotes that
T9457 15-23 VB denotes reported
T9456 12-14 PRP denotes we
T9455 10-11 -COMMA- denotes ,
T9454 0-10 RB denotes Previously
T9609 914-915 -RRB- denotes )
T9608 912-914 NN denotes 5F
T9607 908-911 CC denotes and
T9606 905-907 NN denotes 5D
T9605 903-904 -COMMA- denotes ,
T9604 899-903 NN denotes 4A-B
R7644 T9457 T9454 arg1Of reported,Previously
R7645 T9457 T9455 arg1Of reported,","
R7673 T9488 T9487 arg1Of group,saline-infused
R7674 T9490 T9491 arg1Of loss,of
R7675 T9490 T9494 arg1Of loss,was
R7676 T9490 T9495 arg2Of loss,detected
R7677 T9493 T9491 arg2Of immunoreactivity,of
R7678 T9493 T9492 arg1Of immunoreactivity,SMI-71
R7682 T9495 T9489 arg1Of detected,","
R7683 T9495 T9494 arg2Of detected,was
R7684 T9495 T9496 arg1Of detected,in
R7685 T9497 T9496 arg2Of layer,in
R7686 T9497 T9498 arg1Of layer,III/IV
R7687 T9497 T9499 arg1Of layer,of
R7688 T9501 T9499 arg2Of PC,of
R7689 T9501 T9500 arg1Of PC,the
R7690 T9502 T9495 arg3Of as,detected
R7691 T9503 T9502 arg2Of compared,as
R7692 T9503 T9504 arg1Of compared,to
R7693 T9506 T9504 arg2Of animals,to
R7694 T9506 T9505 arg1Of animals,non-SE
R7695 T9506 T9507 arg1Of animals,(
R7696 T9509 T9510 arg1Of 4B,and
R7697 T9510 T9507 arg2Of and,(
R7698 T9510 T9508 arg1Of and,Figures
R7699 T9510 T9512 arg1Of and,","
R7700 T9511 T9510 arg2Of 5C-E,and
R7701 T9513 T9512 arg2Of p,","
R7702 T9513 T9514 arg1Of p,<
R7703 T9513 T9515 arg1Of p,0.05
R7704 T9516 T9507 arg3Of ),(
R7705 T9519 T9520 arg1Of loss,of
R7706 T9519 T9523 arg1Of loss,correlated
R7707 T9522 T9520 arg2Of immunoreactivity,of
R7708 T9522 T9521 arg1Of immunoreactivity,SMI-71
R7709 T9523 T9517 arg1Of correlated,Thus
R7710 T9523 T9518 arg1Of correlated,","
R7711 T9523 T9524 arg1Of correlated,with
R7712 T9525 T9524 arg2Of volume,with
R7713 T9525 T9526 arg1Of volume,of
R7714 T9528 T9526 arg2Of edema,of
R7715 T9528 T9527 arg1Of edema,vasogenic
R7716 T9528 T9529 arg1Of edema,following
R7717 T9530 T9529 arg2Of SE,following
R7718 T9532 T9531 arg1Of reduction,This
R7719 T9532 T9533 arg1Of reduction,in
R7720 T9532 T9535 arg1Of reduction,was
R7721 T9532 T9536 arg2Of reduction,accompanied
R7722 T9534 T9533 arg2Of SMI-71,in
R7723 T9536 T9535 arg2Of accompanied,was
R7724 T9540 T9536 arg1Of phosphorylation,accompanied
R7725 T9540 T9537 arg2Of phosphorylation,by
R7726 T9540 T9538 arg2Of phosphorylation,increased
R7727 T9540 T9539 arg1Of phosphorylation,p65-Thr435
R7728 T9540 T9541 arg1Of phosphorylation,(
R7729 T9543 T9541 arg2Of 5C-D,(
R7730 T9543 T9542 arg1Of 5C-D,Figures
R7731 T9544 T9541 arg3Of ),(
R7732 T9548 T9547 arg1Of degree,the
R7733 T9548 T9549 arg1Of degree,of
R7734 T9548 T9552 arg1Of degree,was
R7735 T9548 T9554 arg2Of degree,correlated
R7736 T9551 T9549 arg2Of immunoreactivity,of
R7737 T9551 T9550 arg1Of immunoreactivity,SMI-71
R7738 T9554 T9545 arg1Of correlated,Therefore
R7739 T9554 T9546 arg1Of correlated,","
R7740 T9554 T9552 arg2Of correlated,was
R7741 T9554 T9553 arg1Of correlated,inversely
R7742 T9554 T9555 arg1Of correlated,to
R7743 T9554 T9558 arg1Of correlated,with
R7744 T9554 T9566 arg1Of correlated,(
R7745 T9557 T9555 arg2Of phosphorylation,to
R7746 T9557 T9556 arg1Of phosphorylation,p65-Thr435
R7747 T9561 T9558 arg2Of coefficient,with
R7748 T9561 T9559 arg1Of coefficient,a
R7749 T9561 T9560 arg1Of coefficient,linear
R7750 T9561 T9562 arg1Of coefficient,of
R7751 T9561 T9564 arg1Of coefficient,of
R7752 T9563 T9562 arg2Of correlation,of
R7753 T9565 T9564 arg2Of -0.6324,of
R7754 T9567 T9566 arg2Of p,(
R7755 T9567 T9568 arg1Of p,<
R7756 T9567 T9569 arg1Of p,0.05
R7757 T9567 T9570 arg1Of p,;
R7758 T9572 T9570 arg2Of 4C,;
R7759 T9572 T9571 arg1Of 4C,Figure
R7760 T9573 T9566 arg3Of ),(
R7761 T9575 T9574 arg2Of addition,In
R7762 T9578 T9577 arg1Of infusion,sTNFp55R
R7763 T9578 T9580 arg1Of infusion,alleviated
R7764 T9580 T9574 arg1Of alleviated,In
R7765 T9580 T9576 arg1Of alleviated,","
R7766 T9580 T9579 arg1Of alleviated,effectively
R7767 T9580 T9592 arg1Of alleviated,","
R7768 T9580 T9593 arg1Of alleviated,as
R7769 T9582 T9581 arg1Of phosphorylation,p65-Thr435
R7770 T9582 T9583 arg1Of phosphorylation,and
R7771 T9583 T9580 arg2Of and,alleviated
R7772 T9583 T9587 arg1Of and,in
R7773 T9586 T9583 arg2Of immunoreactivity,and
R7774 T9586 T9584 arg2Of immunoreactivity,preserved
R7775 T9586 T9585 arg1Of immunoreactivity,SMI-71
R7776 T9589 T9587 arg2Of cells,in
R7777 T9589 T9588 arg1Of cells,endothelial
R7778 T9589 T9590 arg1Of cells,following
R7779 T9591 T9590 arg2Of SE,following
R7780 T9594 T9593 arg2Of compared,as
R7781 T9594 T9595 arg1Of compared,to
R7782 T9597 T9595 arg2Of infusion,to
R7783 T9597 T9596 arg1Of infusion,saline
R7784 T9597 T9598 arg1Of infusion,(
R7785 T9599 T9598 arg2Of p,(
R7786 T9599 T9600 arg1Of p,<
R7787 T9599 T9601 arg1Of p,0.05
R7788 T9599 T9602 arg1Of p,;
R7789 T9604 T9605 arg1Of 4A-B,","
R7790 T9605 T9607 arg1Of ",",and
R7791 T9606 T9605 arg2Of 5D,","
R7792 T9607 T9602 arg2Of and,;
R7793 T9607 T9603 arg1Of and,Figures
R7794 T9608 T9607 arg2Of 5F,and
R7795 T9609 T9598 arg3Of ),(
R7643 T9456 T9457 arg1Of we,reported
R7654 T9467 T9457 arg2Of decreased,reported
R7655 T9467 T9458 arg1Of decreased,that
R7652 T9466 T9459 arg1Of immunoreactivity,SMI-71
R7646 T9459 T9460 arg1Of SMI-71,(
R7647 T9464 T9460 arg2Of antigen,(
R7651 T9465 T9460 arg3Of ),(
R7648 T9464 T9461 arg1Of antigen,an
R7649 T9464 T9462 arg1Of antigen,endothelial
R7650 T9464 T9463 arg1Of antigen,barrier
R7653 T9466 T9467 arg1Of immunoreactivity,decreased
R7656 T9467 T9468 arg1Of decreased,in
R7657 T9467 T9473 arg1Of decreased,after
R7658 T9472 T9468 arg2Of day,in
R7659 T9472 T9469 arg1Of day,the
R7660 T9472 T9470 arg1Of day,PC
R7661 T9472 T9471 arg1Of day,1
R7662 T9474 T9473 arg2Of SE,after
R7663 T9474 T9475 arg1Of SE,[
R7664 T9476 T9475 arg2Of 5,[
R7665 T9477 T9475 arg3Of ],[
R7666 T9484 T9480 arg2Of animals,in
R7667 T9484 T9481 arg1Of animals,1
R7668 T9484 T9482 arg1Of animals,day-post
R7669 T9484 T9483 arg1Of animals,SE
R7670 T9484 T9485 arg1Of animals,of
R7671 T9488 T9485 arg2Of group,of
R7672 T9488 T9486 arg1Of group,the
R7679 T9495 T9478 arg1Of detected,Similarly
R7680 T9495 T9479 arg1Of detected,","
R7681 T9495 T9480 arg1Of detected,in

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T9425 749-752 Protein denotes p65
T9424 709-716 Protein denotes TNFp55R
T9422 473-476 Protein denotes p65
T9423 593-596 Protein denotes p65

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9615 749-752 http://www.uniprot.org/uniprot/P21579 denotes p65
T9614 593-596 http://www.uniprot.org/uniprot/P21579 denotes p65
T9613 473-476 http://www.uniprot.org/uniprot/P21579 denotes p65
T9612 749-752 http://www.uniprot.org/uniprot/Q04206 denotes p65
T9611 593-596 http://www.uniprot.org/uniprot/Q04206 denotes p65
T9610 473-476 http://www.uniprot.org/uniprot/Q04206 denotes p65

GO-BP

Id Subject Object Predicate Lexical cue
T9428 760-775 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T9427 604-619 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T9426 484-499 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T9429 829-834 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T9409 695-916 Sentence denotes In addition, sTNFp55R infusion effectively alleviated p65-Thr435 phosphorylation and preserved SMI-71 immunoreactivity in endothelial cells following SE, as compared to saline infusion (p < 0.05; Figures 4A-B, 5D and 5F).
T9408 516-694 Sentence denotes Therefore, the degree of SMI-71 immunoreactivity was inversely correlated to p65-Thr435 phosphorylation with a linear coefficient of correlation of -0.6324 (p < 0.05; Figure 4C).
T9407 419-515 Sentence denotes This reduction in SMI-71 was accompanied by increased p65-Thr435 phosphorylation (Figures 5C-D).
T9406 325-418 Sentence denotes Thus, loss of SMI-71 immunoreactivity correlated with volume of vasogenic edema following SE.
T9405 126-324 Sentence denotes Similarly, in 1 day-post SE animals of the saline-infused group, loss of SMI-71 immunoreactivity was detected in layer III/IV of the PC as compared to non-SE animals (Figures 4B and 5C-E, p < 0.05).
T9404 0-125 Sentence denotes Previously, we reported that SMI-71 (an endothelial barrier antigen) immunoreactivity decreased in the PC 1 day after SE [5].
T181 0-125 Sentence denotes Previously, we reported that SMI-71 (an endothelial barrier antigen) immunoreactivity decreased in the PC 1 day after SE [5].
T182 126-324 Sentence denotes Similarly, in 1 day-post SE animals of the saline-infused group, loss of SMI-71 immunoreactivity was detected in layer III/IV of the PC as compared to non-SE animals (Figures 4B and 5C-E, p < 0.05).
T183 325-418 Sentence denotes Thus, loss of SMI-71 immunoreactivity correlated with volume of vasogenic edema following SE.
T184 419-515 Sentence denotes This reduction in SMI-71 was accompanied by increased p65-Thr435 phosphorylation (Figures 5C-D).
T185 516-694 Sentence denotes Therefore, the degree of SMI-71 immunoreactivity was inversely correlated to p65-Thr435 phosphorylation with a linear coefficient of correlation of -0.6324 (p < 0.05; Figure 4C).
T186 695-916 Sentence denotes In addition, sTNFp55R infusion effectively alleviated p65-Thr435 phosphorylation and preserved SMI-71 immunoreactivity in endothelial cells following SE, as compared to saline infusion (p < 0.05; Figures 4A-B, 5D and 5F).

simple1

Id Subject Object Predicate Lexical cue
T9451 749-752 Protein denotes p65
T9450 709-716 Protein denotes TNFp55R
T9449 593-596 Protein denotes p65
T9448 473-476 Protein denotes p65

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T9833 738-748 Negative_regulation denotes alleviated
T9832 760-775 Phosphorylation denotes phosphorylation
T9831 604-619 Phosphorylation denotes phosphorylation
T9830 463-472 Positive_regulation denotes increased
T9829 484-499 Phosphorylation denotes phosphorylation
T9828 749-752 Protein denotes p65
T9827 709-716 Protein denotes TNFp55R
T9826 593-596 Protein denotes p65
T9825 473-476 Protein denotes p65
R7985 T9825 T9829 themeOf p65,phosphorylation
R7986 T9825 T9830 themeOf p65,increased
R7987 T9826 T9831 themeOf p65,phosphorylation
R7988 T9828 T9832 themeOf p65,phosphorylation
R7989 T9829 T9830 themeOf phosphorylation,increased
R7990 T9832 T9833 themeOf phosphorylation,alleviated

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T9788 738-748 Negative_regulation denotes alleviated
T9787 760-775 Phosphorylation denotes phosphorylation
T9786 604-619 Phosphorylation denotes phosphorylation
T9785 484-499 Phosphorylation denotes phosphorylation
T9784 463-472 Positive_regulation denotes increased
T9783 749-752 Protein denotes p65
T9782 709-716 Protein denotes TNFp55R
T9781 593-596 Protein denotes p65
T9780 473-476 Protein denotes p65
R7960 T9780 T9785 themeOf p65,phosphorylation
R7961 T9780 T9784 themeOf p65,increased
R7962 T9781 T9786 themeOf p65,phosphorylation
R7963 T9782 T9788 causeOf TNFp55R,alleviated
R7964 T9783 T9787 themeOf p65,phosphorylation
R7965 T9785 T9784 themeOf phosphorylation,increased
R7966 T9787 T9788 themeOf phosphorylation,alleviated

DLUT931

Id Subject Object Predicate Lexical cue
T9799 738-748 Negative_regulation denotes alleviated
T9798 835-844 Positive_regulation denotes following
T9797 760-775 Phosphorylation denotes phosphorylation
T9796 604-619 Phosphorylation denotes phosphorylation
T9795 463-472 Positive_regulation denotes increased
T9794 484-499 Phosphorylation denotes phosphorylation
T9793 749-752 Protein denotes p65
T9792 709-716 Protein denotes TNFp55R
T9791 593-596 Protein denotes p65
T9790 473-476 Protein denotes p65
R7967 T9790 T9794 themeOf p65,phosphorylation
R7968 T9791 T9796 themeOf p65,phosphorylation
R7969 T9793 T9797 themeOf p65,phosphorylation
R7970 T9794 T9795 themeOf phosphorylation,increased
R7971 T9797 T9798 themeOf phosphorylation,following
R7972 T9797 T9799 themeOf phosphorylation,alleviated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T9855 565-671 Phosphorylation denotes was inversely correlated to p65-Thr435 phosphorylation with a linear coefficient of correlation of -0.6324
T9854 463-514 Phosphorylation denotes increased p65-Thr435 phosphorylation (Figures 5C-D)
T9853 463-514 Positive_regulation denotes increased p65-Thr435 phosphorylation (Figures 5C-D)
T9852 60-67 Entity denotes antigen
T9851 749-759 Protein denotes p65-Thr435
T9850 749-759 Entity denotes p65-Thr435
T9849 249-251 Protein denotes IV
T9848 473-483 Protein denotes p65-Thr435
T9847 118-124 Protein denotes SE [5]
T9846 709-712 Protein denotes TNF
T9845 255-261 Protein denotes the PC
T9844 708-725 Entity denotes sTNFp55R infusion
T9843 473-483 Entity denotes p65-Thr435
T9842 817-834 Entity denotes endothelial cells
T9841 415-417 Entity denotes SE
T9840 99-111 Protein denotes the PC 1 day
T9839 593-603 Protein denotes p65-Thr435
T9838 673-674 Entity denotes p
T9837 845-847 Protein denotes SE
T9836 151-153 Protein denotes SE
T9835 593-603 Entity denotes p65-Thr435
T9834 864-915 Entity denotes saline infusion (p < 0.05; Figures 4A-B, 5D and 5F)
R7991 T9835 T9839 partOf p65-Thr435,p65-Thr435
R7992 T9835 T9855 siteOf p65-Thr435,was inversely correlated to p65-Thr435 phosphorylation with a linear coefficient of correlation of -0.6324
R7993 T9839 T9855 themeOf p65-Thr435,was inversely correlated to p65-Thr435 phosphorylation with a linear coefficient of correlation of -0.6324
R7994 T9843 T9848 partOf p65-Thr435,p65-Thr435
R7995 T9843 T9854 siteOf p65-Thr435,increased p65-Thr435 phosphorylation (Figures 5C-D)
R7996 T9848 T9854 themeOf p65-Thr435,increased p65-Thr435 phosphorylation (Figures 5C-D)
R7997 T9854 T9853 themeOf increased p65-Thr435 phosphorylation (Figures 5C-D),increased p65-Thr435 phosphorylation (Figures 5C-D)

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9779 915-916 . denotes .
T9778 914-915 -RRB- denotes )
T9777 912-914 NNP denotes 5F
T9776 908-911 CC denotes and
T9775 905-907 NNP denotes 5D
T9774 903-904 , denotes ,
T9773 899-903 NN denotes 4A-B
T9772 891-898 NNS denotes Figures
T9771 889-890 : denotes ;
T9770 885-889 CD denotes 0.05
T9769 883-884 FW denotes <
T9768 881-882 FW denotes p
T9767 880-881 -LRB- denotes (
T9766 871-879 NN denotes infusion
T9765 864-870 VB denotes saline
T9764 861-863 TO denotes to
T9763 852-860 VBN denotes compared
T9762 849-851 IN denotes as
T9761 847-848 , denotes ,
T9760 845-847 NNP denotes SE
T9759 835-844 VBG denotes following
T9758 829-834 NNS denotes cells
T9757 817-828 JJ denotes endothelial
T9756 814-816 IN denotes in
T9755 797-813 NN denotes immunoreactivity
T9754 790-796 NNP denotes SMI-71
T9753 780-789 VBD denotes preserved
T9752 776-779 CC denotes and
T9751 760-775 NN denotes phosphorylation
T9750 749-759 JJ denotes p65-Thr435
T9749 738-748 VBD denotes alleviated
T9748 726-737 RB denotes effectively
T9747 717-725 NN denotes infusion
T9746 708-716 JJ denotes sTNFp55R
T9745 706-707 , denotes ,
T9744 698-706 NN denotes addition
T9743 695-697 IN denotes In
T9742 693-694 . denotes .
T9741 692-693 -RRB- denotes )
T9740 690-692 NN denotes 4C
T9739 683-689 NN denotes Figure
T9738 681-682 : denotes ;
T9737 677-681 CD denotes 0.05
T9736 675-676 NN denotes <
T9735 673-674 NN denotes p
T9734 672-673 -LRB- denotes (
T9733 664-671 CD denotes -0.6324
T9732 661-663 IN denotes of
T9731 649-660 NN denotes correlation
T9730 646-648 IN denotes of
T9729 634-645 NN denotes coefficient
T9728 627-633 JJ denotes linear
T9727 625-626 DT denotes a
T9726 620-624 IN denotes with
T9725 604-619 NN denotes phosphorylation
T9724 593-603 JJ denotes p65-Thr435
T9723 590-592 TO denotes to
T9722 579-589 VBN denotes correlated
T9721 569-578 RB denotes inversely
T9720 565-568 VBD denotes was
T9719 548-564 NN denotes immunoreactivity
T9718 541-547 NNP denotes SMI-71
T9717 538-540 IN denotes of
T9716 531-537 NN denotes degree
T9715 527-530 DT denotes the
T9714 525-526 , denotes ,
T9713 516-525 RB denotes Therefore
T9712 514-515 . denotes .
T9711 513-514 -RRB- denotes )
T9710 509-513 NN denotes 5C-D
T9709 501-508 NNS denotes Figures
T9708 500-501 -LRB- denotes (
T9707 484-499 NN denotes phosphorylation
T9706 473-483 NN denotes p65-Thr435
T9705 463-472 VBN denotes increased
T9704 460-462 IN denotes by
T9703 448-459 VBN denotes accompanied
T9702 444-447 VBD denotes was
T9701 437-443 NN denotes SMI-71
T9700 434-436 IN denotes in
T9699 424-433 NN denotes reduction
T9698 419-423 DT denotes This
T9697 417-418 . denotes .
T9696 415-417 NNP denotes SE
T9695 405-414 VBG denotes following
T9694 399-404 NN denotes edema
T9693 389-398 JJ denotes vasogenic
T9692 386-388 IN denotes of
T9691 379-385 NN denotes volume
T9690 374-378 IN denotes with
T9689 363-373 VBN denotes correlated
T9688 346-362 NN denotes immunoreactivity
T9687 339-345 NNP denotes SMI-71
T9686 336-338 IN denotes of
T9685 331-335 NN denotes loss
T9684 329-330 , denotes ,
T9683 325-329 RB denotes Thus
T9682 323-324 . denotes .
T9681 322-323 -RRB- denotes )
T9680 318-322 CD denotes 0.05
T9679 316-317 NN denotes <
T9678 314-315 JJ denotes p
T9677 312-313 , denotes ,
T9676 308-312 JJ denotes 5C-E
T9675 304-307 CC denotes and
T9674 301-303 NN denotes 4B
T9673 293-300 NNS denotes Figures
T9672 292-293 -LRB- denotes (
T9671 284-291 NNS denotes animals
T9670 277-283 JJ denotes non-SE
T9669 274-276 TO denotes to
T9668 265-273 VBN denotes compared
T9667 262-264 IN denotes as
T9666 259-261 NN denotes PC
T9665 255-258 DT denotes the
T9664 252-254 IN denotes of
T9663 245-251 NNP denotes III/IV
T9662 239-244 NN denotes layer
T9661 236-238 IN denotes in
T9660 227-235 VBN denotes detected
T9659 223-226 VBD denotes was
T9658 206-222 NN denotes immunoreactivity
T9657 199-205 NNP denotes SMI-71
T9656 196-198 IN denotes of
T9655 191-195 NN denotes loss
T9654 189-190 , denotes ,
T9653 184-189 NN denotes group
T9652 169-183 JJ denotes saline-infused
T9651 165-168 DT denotes the
T9650 162-164 IN denotes of
T9649 154-161 NNS denotes animals
T9648 151-153 NNP denotes SE
T9647 142-150 JJ denotes day-post
T9646 140-141 CD denotes 1
T9645 137-139 IN denotes in
T9644 135-136 , denotes ,
T9643 126-135 RB denotes Similarly
T9642 124-125 . denotes .
T9641 123-124 NNP denotes ]
T9640 122-123 CD denotes 5
T9639 121-122 NNP denotes [
T9638 118-120 NNP denotes SE
T9637 112-117 IN denotes after
T9636 108-111 NN denotes day
T9635 106-107 CD denotes 1
T9634 103-105 NN denotes PC
T9633 99-102 DT denotes the
T9632 96-98 IN denotes in
T9631 86-95 VBN denotes decreased
T9630 69-85 NN denotes immunoreactivity
T9629 67-68 -RRB- denotes )
T9628 60-67 NN denotes antigen
T9627 52-59 NN denotes barrier
T9626 40-51 JJ denotes endothelial
T9625 37-39 DT denotes an
T9624 36-37 -LRB- denotes (
T9623 29-35 NNP denotes SMI-71
T9622 24-28 IN denotes that
T9621 15-23 VBD denotes reported
T9620 12-14 PRP denotes we
T9619 10-11 , denotes ,
T9618 0-10 RB denotes Previously
R7798 T9618 T9621 advmod Previously,reported
R7799 T9619 T9621 punct ",",reported
R7800 T9620 T9621 nsubj we,reported
R7801 T9621 T9621 ROOT reported,reported
R7802 T9622 T9631 mark that,decreased
R7803 T9623 T9630 nmod SMI-71,immunoreactivity
R7804 T9624 T9623 punct (,SMI-71
R7805 T9625 T9628 det an,antigen
R7806 T9626 T9628 amod endothelial,antigen
R7807 T9627 T9628 compound barrier,antigen
R7808 T9628 T9623 appos antigen,SMI-71
R7809 T9629 T9623 punct ),SMI-71
R7810 T9630 T9631 nsubj immunoreactivity,decreased
R7811 T9631 T9621 ccomp decreased,reported
R7812 T9632 T9631 prep in,decreased
R7814 T9634 T9636 nmod PC,day
R7815 T9635 T9636 nummod 1,day
R7816 T9636 T9632 pobj day,in
R7817 T9637 T9636 prep after,day
R7818 T9638 T9641 nmod SE,]
R7819 T9639 T9641 nmod [,]
R7820 T9640 T9641 nummod 5,]
R7821 T9641 T9637 pobj ],after
R7822 T9642 T9621 punct .,reported
R7823 T9643 T9660 advmod Similarly,detected
R7824 T9644 T9660 punct ",",detected
R7825 T9645 T9660 prep in,detected
R7826 T9646 T9649 nummod 1,animals
R7827 T9647 T9649 amod day-post,animals
R7828 T9648 T9649 compound SE,animals
R7829 T9649 T9645 pobj animals,in
R7830 T9650 T9649 prep of,animals
R7831 T9651 T9653 det the,group
R7832 T9652 T9653 amod saline-infused,group
R7833 T9653 T9650 pobj group,of
R7834 T9654 T9653 punct ",",group
R7835 T9655 T9660 nsubjpass loss,detected
R7836 T9656 T9655 prep of,loss
R7837 T9657 T9658 compound SMI-71,immunoreactivity
R7838 T9658 T9656 pobj immunoreactivity,of
R7839 T9659 T9660 auxpass was,detected
R7840 T9660 T9660 ROOT detected,detected
R7841 T9661 T9660 prep in,detected
R7842 T9662 T9663 compound layer,III/IV
R7843 T9663 T9661 pobj III/IV,in
R7844 T9664 T9663 prep of,III/IV
R7845 T9665 T9666 det the,PC
R7846 T9666 T9664 pobj PC,of
R7847 T9667 T9668 mark as,compared
R7848 T9668 T9660 advcl compared,detected
R7849 T9669 T9668 prep to,compared
R7850 T9670 T9671 amod non-SE,animals
R7851 T9671 T9669 pobj animals,to
R7852 T9672 T9674 punct (,4B
R7853 T9673 T9674 compound Figures,4B
R7854 T9674 T9671 appos 4B,animals
R7855 T9675 T9674 cc and,4B
R7856 T9676 T9674 conj 5C-E,4B
R7857 T9677 T9676 punct ",",5C-E
R7858 T9678 T9676 conj p,5C-E
R7859 T9679 T9680 compound <,0.05
R7860 T9680 T9678 nummod 0.05,p
R7861 T9681 T9678 punct ),p
R7862 T9682 T9660 punct .,detected
R7863 T9683 T9689 advmod Thus,correlated
R7864 T9684 T9689 punct ",",correlated
R7865 T9685 T9689 nsubj loss,correlated
R7866 T9686 T9685 prep of,loss
R7867 T9687 T9688 compound SMI-71,immunoreactivity
R7868 T9688 T9686 pobj immunoreactivity,of
R7869 T9689 T9689 ROOT correlated,correlated
R7870 T9690 T9689 prep with,correlated
R7871 T9691 T9690 pobj volume,with
R7872 T9692 T9691 prep of,volume
R7873 T9693 T9694 amod vasogenic,edema
R7874 T9694 T9692 pobj edema,of
R7875 T9695 T9689 prep following,correlated
R7876 T9696 T9695 pobj SE,following
R7877 T9697 T9689 punct .,correlated
R7878 T9698 T9699 det This,reduction
R7879 T9699 T9703 nsubjpass reduction,accompanied
R7880 T9700 T9699 prep in,reduction
R7881 T9701 T9700 pobj SMI-71,in
R7882 T9702 T9703 auxpass was,accompanied
R7883 T9703 T9703 ROOT accompanied,accompanied
R7884 T9704 T9703 agent by,accompanied
R7885 T9705 T9707 amod increased,phosphorylation
R7886 T9706 T9707 compound p65-Thr435,phosphorylation
R7887 T9707 T9704 pobj phosphorylation,by
R7888 T9708 T9710 punct (,5C-D
R7889 T9709 T9710 compound Figures,5C-D
R7890 T9710 T9707 appos 5C-D,phosphorylation
R7891 T9711 T9710 punct ),5C-D
R7892 T9712 T9703 punct .,accompanied
R7893 T9713 T9722 advmod Therefore,correlated
R7894 T9714 T9722 punct ",",correlated
R7895 T9715 T9716 det the,degree
R7896 T9716 T9722 nsubjpass degree,correlated
R7897 T9717 T9716 prep of,degree
R7898 T9718 T9719 compound SMI-71,immunoreactivity
R7899 T9719 T9717 pobj immunoreactivity,of
R7900 T9720 T9722 auxpass was,correlated
R7901 T9721 T9722 advmod inversely,correlated
R7902 T9722 T9722 ROOT correlated,correlated
R7903 T9723 T9722 prep to,correlated
R7904 T9724 T9725 amod p65-Thr435,phosphorylation
R7905 T9725 T9723 pobj phosphorylation,to
R7906 T9726 T9722 prep with,correlated
R7907 T9727 T9729 det a,coefficient
R7914 T9734 T9736 punct (,<
R7915 T9735 T9736 compound p,<
R7916 T9736 T9731 appos <,correlation
R7917 T9737 T9736 nummod 0.05,<
R7918 T9738 T9740 punct ;,4C
R7919 T9739 T9740 compound Figure,4C
R7920 T9740 T9736 appos 4C,<
R7921 T9741 T9740 punct ),4C
R7922 T9742 T9722 punct .,correlated
R7923 T9743 T9749 prep In,alleviated
R7924 T9744 T9743 pobj addition,In
R7925 T9745 T9749 punct ",",alleviated
R7926 T9746 T9747 compound sTNFp55R,infusion
R7927 T9747 T9749 nsubj infusion,alleviated
R7928 T9748 T9749 advmod effectively,alleviated
R7929 T9749 T9749 ROOT alleviated,alleviated
R7930 T9750 T9751 amod p65-Thr435,phosphorylation
R7931 T9751 T9749 dobj phosphorylation,alleviated
R7932 T9752 T9749 cc and,alleviated
R7933 T9753 T9749 conj preserved,alleviated
R7934 T9754 T9755 compound SMI-71,immunoreactivity
R7935 T9755 T9753 dobj immunoreactivity,preserved
R7936 T9756 T9755 prep in,immunoreactivity
R7937 T9757 T9758 amod endothelial,cells
R7938 T9758 T9756 pobj cells,in
R7939 T9759 T9758 acl following,cells
R7940 T9760 T9759 dobj SE,following
R7941 T9761 T9753 punct ",",preserved
R7942 T9762 T9753 prep as,preserved
R7943 T9763 T9762 prep compared,as
R7944 T9764 T9763 prep to,compared
R7945 T9765 T9766 amod saline,infusion
R7946 T9766 T9764 pobj infusion,to
R7947 T9767 T9766 punct (,infusion
R7948 T9768 T9773 advmod p,4A-B
R7949 T9769 T9770 nmod <,0.05
R7950 T9770 T9768 nummod 0.05,p
R7951 T9771 T9768 punct ;,p
R7952 T9772 T9773 compound Figures,4A-B
R7953 T9773 T9766 appos 4A-B,infusion
R7954 T9774 T9773 punct ",",4A-B
R7955 T9775 T9773 conj 5D,4A-B
R7956 T9776 T9775 cc and,5D
R7957 T9777 T9775 conj 5F,5D
R7958 T9778 T9775 punct ),5D
R7959 T9779 T9749 punct .,alleviated
R7813 T9633 T9636 det the,day
R7908 T9728 T9729 amod linear,coefficient
R7909 T9729 T9726 pobj coefficient,with
R7910 T9730 T9729 prep of,coefficient
R7911 T9731 T9730 pobj correlation,of
R7912 T9732 T9731 prep of,correlation
R7913 T9733 T9732 pobj -0.6324,of

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T9430 103-107 Protein denotes PC 1
T9447 760-775 Phosphorylation denotes phosphorylation
T9446 760-775 Phosphorylation denotes phosphorylation
T9445 760-775 Phosphorylation denotes phosphorylation
T9444 753-759 Protein denotes Thr435
T9443 749-752 Protein denotes p65
T9442 708-716 Protein denotes sTNFp55R
T9441 604-619 Phosphorylation denotes phosphorylation
T9440 604-619 Phosphorylation denotes phosphorylation
T9439 597-603 Protein denotes Thr435
T9438 593-596 Protein denotes p65
T9437 463-472 Positive_regulation denotes increased
T9436 463-472 Positive_regulation denotes increased
T9435 484-499 Phosphorylation denotes phosphorylation
T9434 484-499 Phosphorylation denotes phosphorylation
T9433 477-483 Protein denotes Thr435
T9432 473-476 Protein denotes p65
T9431 86-95 Negative_regulation denotes decreased
R7632 T9430 T9431 themeOf PC 1,decreased
R7633 T9432 T9434 themeOf p65,phosphorylation
R7634 T9433 T9435 themeOf Thr435,phosphorylation
R7635 T9434 T9436 themeOf phosphorylation,increased
R7636 T9435 T9437 themeOf phosphorylation,increased
R7637 T9438 T9440 themeOf p65,phosphorylation
R7638 T9439 T9441 themeOf Thr435,phosphorylation
R7639 T9442 T9445 themeOf sTNFp55R,phosphorylation
R7640 T9443 T9446 themeOf p65,phosphorylation
R7641 T9444 T9447 themeOf Thr435,phosphorylation

testone

Id Subject Object Predicate Lexical cue
T9388 835-844 Positive_regulation denotes following
T9387 760-775 Phosphorylation denotes phosphorylation
T9386 738-748 Positive_regulation denotes alleviated
T9385 604-619 Phosphorylation denotes phosphorylation
T9384 484-499 Phosphorylation denotes phosphorylation
T9383 463-472 Positive_regulation denotes increased
T9382 424-433 Negative_regulation denotes reduction
T9381 331-335 Negative_regulation denotes loss
T9380 191-195 Negative_regulation denotes loss
T9378 749-752 Protein denotes p65
T9377 709-716 Protein denotes TNFp55R
T9376 593-596 Protein denotes p65
T9375 473-476 Protein denotes p65
R7612 T9375 T9384 themeOf p65,phosphorylation
R7613 T9376 T9385 themeOf p65,phosphorylation
R7614 T9378 T9387 themeOf p65,phosphorylation
R7615 T9384 T9383 themeOf phosphorylation,increased
R7616 T9387 T9386 themeOf phosphorylation,alleviated

test3

Id Subject Object Predicate Lexical cue
T9402 760-775 Phosphorylation denotes phosphorylation
T9401 749-752 Protein denotes p65
T9400 738-748 Negative_regulation denotes alleviated
T9399 708-716 Protein denotes sTNFp55R
T9398 604-619 Phosphorylation denotes phosphorylation
T9397 593-596 Protein denotes p65
T9396 484-499 Phosphorylation denotes phosphorylation
T9395 473-476 Protein denotes p65
T9394 463-472 Positive_regulation denotes increased
T9392 749-752 Protein denotes p65
T9391 709-716 Protein denotes TNFp55R
T9390 593-596 Protein denotes p65
T9389 473-476 Protein denotes p65
R7617 T9395 T9396 themeOf p65,phosphorylation
R7618 T9396 T9394 themeOf phosphorylation,increased
R7619 T9397 T9398 themeOf p65,phosphorylation
R7620 T9399 T9400 causeOf sTNFp55R,alleviated
R7621 T9401 T9402 themeOf p65,phosphorylation
R7622 T9402 T9400 themeOf phosphorylation,alleviated