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PMC:3312845 / 22423-22916 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T15555 490-492 NN denotes SE
T15554 480-489 VB denotes following
T15553 477-479 NN denotes PC
T15552 473-476 DT denotes the
T15551 470-472 IN denotes in
T15550 463-469 NN denotes SMI-71
T15549 459-462 CC denotes and
T15548 443-458 NN denotes phosphorylation
T15547 432-442 NN denotes p65-Thr435
T15546 424-431 IN denotes between
T15545 415-423 NN denotes analysis
T15544 404-414 NN denotes regression
T15543 397-403 JJ denotes Linear
T15542 395-396 -RRB- denotes )
T15541 394-395 NN denotes C
T15540 393-394 -LRB- denotes (
T15539 387-392 CD denotes 0.05.
T15538 385-386 SYM denotes <
T15537 382-384 NN denotes *p
T15536 380-381 -COMMA- denotes ,
T15535 373-380 NN denotes animals
T15534 358-372 JJ denotes saline-infused
T15533 353-357 IN denotes from
T15480 39-47 NN denotes sTNFp55R
T15479 36-38 IN denotes of
T15478 29-35 NN denotes effect
T15477 25-28 DT denotes the
T15476 22-24 IN denotes of
T15475 13-21 NN denotes analyses
T15474 0-12 JJ denotes Quantitative
T15532 341-352 NN denotes differences
T15531 329-340 JJ denotes Significant
T15530 326-327 -RRB- denotes )
T15529 321-326 NN denotes S.E.M
T15528 319-320 NN denotes ±
T15527 314-318 NN denotes mean
T15526 313-314 -LRB- denotes (
T15525 310-312 NN denotes SE
T15524 304-309 IN denotes after
T15523 300-303 NN denotes day
T15522 298-299 CD denotes 1
T15521 287-297 NN denotes expression
T15520 280-286 NN denotes SMI-71
T15519 277-279 IN denotes of
T15518 268-276 NN denotes analysis
T15517 255-267 JJ denotes Quantitative
T15516 253-254 -RRB- denotes )
T15515 252-253 NN denotes B
T15514 251-252 -LRB- denotes (
T15513 245-250 CD denotes 0.05.
T15512 243-244 SYM denotes <
T15511 240-242 NN denotes *p
T15510 238-239 -COMMA- denotes ,
T15509 231-238 NN denotes animals
T15508 216-230 JJ denotes saline-infused
T15507 211-215 IN denotes from
T15506 199-210 NN denotes differences
T15505 187-198 JJ denotes Significant
T15504 184-185 -RRB- denotes )
T15503 179-184 NN denotes S.E.M
T15502 177-178 NN denotes ±
T15501 172-176 NN denotes mean
T15500 171-172 -LRB- denotes (
T15499 168-170 NN denotes SE
T15498 162-167 IN denotes after
T15497 159-161 NN denotes hr
T15496 156-158 CD denotes 12
T15495 140-155 NN denotes phosphorylation
T15494 134-139 NN denotes NF-κB
T15493 131-133 IN denotes of
T15492 122-130 NN denotes analysis
T15491 109-121 JJ denotes Quantitative
T15490 107-108 -RRB- denotes )
T15489 106-107 NN denotes A
T15488 105-106 -LRB- denotes (
T15487 93-104 NN denotes expression.
T15486 86-92 NN denotes SMI-71
T15485 82-85 CC denotes and
T15484 66-81 NN denotes phosphorylation
T15483 60-65 NN denotes NF-κB
T15482 57-59 IN denotes on
T15481 48-56 NN denotes infusion
R11916 T15475 T15474 arg1Of analyses,Quantitative
R11917 T15475 T15476 arg1Of analyses,of
R11918 T15478 T15476 arg2Of effect,of
R11919 T15478 T15477 arg1Of effect,the
R11920 T15478 T15479 arg1Of effect,of
R11921 T15478 T15482 arg1Of effect,on
R11922 T15481 T15479 arg2Of infusion,of
R11923 T15481 T15480 arg1Of infusion,sTNFp55R
R11924 T15484 T15483 arg1Of phosphorylation,NF-κB
R11925 T15484 T15485 arg1Of phosphorylation,and
R11926 T15485 T15482 arg2Of and,on
R11927 T15487 T15486 arg1Of expression.,SMI-71
R11928 T15487 T15488 arg1Of expression.,(
R11929 T15489 T15488 arg2Of A,(
R11930 T15490 T15488 arg3Of ),(
R11931 T15491 T15487 arg1Of Quantitative,expression.
R11932 T15492 T15485 arg2Of analysis,and
R11933 T15492 T15491 arg1Of analysis,Quantitative
R11934 T15492 T15493 arg1Of analysis,of
R11935 T15497 T15493 arg2Of hr,of
R11936 T15497 T15494 arg1Of hr,NF-κB
R11937 T15497 T15495 arg1Of hr,phosphorylation
R11938 T15497 T15496 arg1Of hr,12
R11939 T15497 T15498 arg1Of hr,after
R11940 T15499 T15498 arg2Of SE,after
R11941 T15499 T15500 arg1Of SE,(
R11942 T15503 T15500 arg2Of S.E.M,(
R11943 T15503 T15501 arg1Of S.E.M,mean
R11944 T15503 T15502 arg1Of S.E.M,±
R11945 T15504 T15500 arg3Of ),(
R11946 T15506 T15505 arg1Of differences,Significant
R11947 T15506 T15507 arg1Of differences,from
R11948 T15506 T15510 arg1Of differences,","
R11949 T15509 T15507 arg2Of animals,from
R11950 T15509 T15508 arg1Of animals,saline-infused
R11951 T15513 T15512 arg1Of 0.05.,<
R11952 T15515 T15514 arg2Of B,(
R11953 T15516 T15514 arg3Of ),(
R11954 T15518 T15510 arg2Of analysis,","
R11955 T15518 T15511 arg1Of analysis,*p
R11956 T15518 T15513 arg1Of analysis,0.05.
R11957 T15518 T15514 arg1Of analysis,(
R11958 T15518 T15517 arg1Of analysis,Quantitative
R11959 T15518 T15519 arg1Of analysis,of
R11960 T15518 T15524 arg1Of analysis,after
R11961 T15521 T15519 arg2Of expression,of
R11962 T15521 T15520 arg1Of expression,SMI-71
R11963 T15521 T15522 arg1Of expression,1
R11964 T15524 T15523 arg1Of after,day
R11965 T15525 T15524 arg2Of SE,after
R11966 T15525 T15526 arg1Of SE,(
R11967 T15529 T15526 arg2Of S.E.M,(
R11968 T15529 T15527 arg1Of S.E.M,mean
R11969 T15529 T15528 arg1Of S.E.M,±
R11970 T15530 T15526 arg3Of ),(
R11971 T15532 T15531 arg1Of differences,Significant
R11972 T15532 T15533 arg1Of differences,from
R11973 T15532 T15536 arg1Of differences,","
R11974 T15535 T15533 arg2Of animals,from
R11975 T15535 T15534 arg1Of animals,saline-infused
R11976 T15541 T15540 arg2Of C,(
R11977 T15542 T15540 arg3Of ),(
R11978 T15545 T15536 arg2Of analysis,","
R11979 T15545 T15537 arg1Of analysis,*p
R11980 T15545 T15538 arg1Of analysis,<
R11981 T15545 T15539 arg1Of analysis,0.05.
R11982 T15545 T15540 arg1Of analysis,(
R11983 T15545 T15543 arg1Of analysis,Linear
R11984 T15545 T15544 arg1Of analysis,regression
R11985 T15545 T15546 arg1Of analysis,between
R11986 T15548 T15549 arg1Of phosphorylation,and
R11987 T15549 T15546 arg2Of and,between
R11988 T15549 T15547 arg1Of and,p65-Thr435
R11989 T15549 T15551 arg1Of and,in
R11990 T15550 T15549 arg2Of SMI-71,and
R11991 T15553 T15551 arg2Of PC,in
R11992 T15553 T15552 arg1Of PC,the
R11993 T15553 T15554 arg1Of PC,following
R11994 T15555 T15554 arg2Of SE,following

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T15465 40-47 Protein denotes TNFp55R
T15466 432-435 Protein denotes p65

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T15557 432-435 http://www.uniprot.org/uniprot/P21579 denotes p65
T15556 432-435 http://www.uniprot.org/uniprot/Q04206 denotes p65

GO-BP

Id Subject Object Predicate Lexical cue
T15469 443-458 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T15468 140-155 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T15467 66-81 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

sentences

Id Subject Object Predicate Lexical cue
T15462 329-493 Sentence denotes Significant differences from saline-infused animals, *p < 0.05. (C) Linear regression analysis between p65-Thr435 phosphorylation and SMI-71 in the PC following SE.
T15461 187-328 Sentence denotes Significant differences from saline-infused animals, *p < 0.05. (B) Quantitative analysis of SMI-71 expression 1 day after SE (mean ± S.E.M).
T15460 0-186 Sentence denotes Quantitative analyses of the effect of sTNFp55R infusion on NF-κB phosphorylation and SMI-71 expression. (A) Quantitative analysis of NF-κB phosphorylation 12 hr after SE (mean ± S.E.M).
T176 187-328 Sentence denotes Significant differences from saline-infused animals, *p < 0.05. (B) Quantitative analysis of SMI-71 expression 1 day after SE (mean ± S.E.M).
T177 329-493 Sentence denotes Significant differences from saline-infused animals, *p < 0.05. (C) Linear regression analysis between p65-Thr435 phosphorylation and SMI-71 in the PC following SE.

simple1

Id Subject Object Predicate Lexical cue
T15471 432-435 Protein denotes p65
T15470 40-47 Protein denotes TNFp55R

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T15679 443-458 Phosphorylation denotes phosphorylation
T15678 432-435 Protein denotes p65
T15677 40-47 Protein denotes TNFp55R
R12098 T15678 T15679 themeOf p65,phosphorylation

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T15653 443-458 Phosphorylation denotes phosphorylation
T15652 432-435 Protein denotes p65
T15651 40-47 Protein denotes TNFp55R
R12086 T15652 T15653 themeOf p65,phosphorylation

DLUT931

Id Subject Object Predicate Lexical cue
T15656 443-458 Phosphorylation denotes phosphorylation
T15655 432-435 Protein denotes p65
T15654 40-47 Protein denotes TNFp55R
R12087 T15655 T15656 themeOf p65,phosphorylation

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T15694 131-185 Phosphorylation denotes of NF-κB phosphorylation 12 hr after SE (mean ± S.E.M)
T15693 60-81 Phosphorylation denotes NF-κB phosphorylation
T15692 432-458 Phosphorylation denotes p65-Thr435 phosphorylation
T15691 490-492 Entity denotes SE
T15690 255-312 Protein denotes Quantitative analysis of SMI-71 expression 1 day after SE
T15689 134-139 Protein denotes NF-κB
T15688 473-492 Protein denotes the PC following SE
T15687 358-364 Entity denotes saline
T15686 216-222 Entity denotes saline
T15685 36-56 Entity denotes of sTNFp55R infusion
T15684 168-185 Entity denotes SE (mean ± S.E.M)
T15683 432-442 Entity denotes p65-Thr435
T15682 60-65 Protein denotes NF-κB
T15681 432-442 Protein denotes p65-Thr435
T15680 40-43 Protein denotes TNF
R12099 T15681 T15692 themeOf p65-Thr435,p65-Thr435 phosphorylation
R12100 T15682 T15693 themeOf NF-κB,NF-κB phosphorylation
R12101 T15683 T15681 partOf p65-Thr435,p65-Thr435
R12102 T15683 T15692 siteOf p65-Thr435,p65-Thr435 phosphorylation
R12103 T15689 T15694 themeOf NF-κB,of NF-κB phosphorylation 12 hr after SE (mean ± S.E.M)

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T15647 492-493 . denotes .
T15646 490-492 NNP denotes SE
T15645 480-489 VBG denotes following
T15644 477-479 NN denotes PC
T15643 473-476 DT denotes the
T15642 470-472 IN denotes in
T15641 463-469 NN denotes SMI-71
T15640 459-462 CC denotes and
T15639 443-458 NN denotes phosphorylation
T15638 432-442 JJ denotes p65-Thr435
T15637 424-431 IN denotes between
T15636 415-423 NN denotes analysis
T15635 404-414 NN denotes regression
T15634 397-403 NNP denotes Linear
T15633 395-396 -RRB- denotes )
T15632 394-395 NNP denotes C
T15631 393-394 -LRB- denotes (
T15630 391-392 . denotes .
T15629 387-391 CD denotes 0.05
T15628 385-386 FW denotes <
T15627 383-384 FW denotes p
T15626 382-383 SYM denotes *
T15625 380-381 , denotes ,
T15624 373-380 NNS denotes animals
T15623 358-372 JJ denotes saline-infused
T15622 353-357 IN denotes from
T15621 341-352 NNS denotes differences
T15620 329-340 JJ denotes Significant
T15619 327-328 . denotes .
T15618 326-327 -RRB- denotes )
T15617 321-326 NNP denotes S.E.M
T15616 319-320 NN denotes ±
T15615 314-318 JJ denotes mean
T15614 313-314 -LRB- denotes (
T15613 310-312 NNP denotes SE
T15612 304-309 IN denotes after
T15611 300-303 NN denotes day
T15610 298-299 CD denotes 1
T15609 287-297 NN denotes expression
T15608 280-286 NNP denotes SMI-71
T15607 277-279 IN denotes of
T15606 268-276 NN denotes analysis
T15605 255-267 JJ denotes Quantitative
T15604 253-254 -RRB- denotes )
T15603 252-253 NNP denotes B
T15602 251-252 -LRB- denotes (
T15601 249-250 . denotes .
T15600 245-249 CD denotes 0.05
T15599 243-244 FW denotes <
T15598 241-242 FW denotes p
T15597 240-241 SYM denotes *
T15596 238-239 , denotes ,
T15595 231-238 NNS denotes animals
T15594 216-230 JJ denotes saline-infused
T15593 211-215 IN denotes from
T15592 199-210 NNS denotes differences
T15591 187-198 JJ denotes Significant
T15590 185-186 . denotes .
T15589 184-185 -RRB- denotes )
T15588 179-184 NNP denotes S.E.M
T15587 177-178 NN denotes ±
T15586 172-176 JJ denotes mean
T15585 171-172 -LRB- denotes (
T15584 168-170 NNP denotes SE
T15583 162-167 IN denotes after
T15582 159-161 NN denotes hr
T15581 156-158 CD denotes 12
T15580 140-155 NN denotes phosphorylation
T15579 134-139 JJ denotes NF-κB
T15578 131-133 IN denotes of
T15577 122-130 NN denotes analysis
T15576 109-121 JJ denotes Quantitative
T15575 107-108 -RRB- denotes )
T15574 106-107 NNP denotes A
T15573 105-106 -LRB- denotes (
T15572 103-104 . denotes .
T15571 93-103 NN denotes expression
T15570 86-92 NN denotes SMI-71
T15569 82-85 CC denotes and
T15568 66-81 NN denotes phosphorylation
T15567 60-65 JJ denotes NF-κB
T15566 57-59 IN denotes on
T15565 48-56 NN denotes infusion
T15564 39-47 JJ denotes sTNFp55R
T15563 36-38 IN denotes of
T15562 29-35 NN denotes effect
T15561 25-28 DT denotes the
T15560 22-24 IN denotes of
T15559 13-21 NNS denotes analyses
T15558 0-12 JJ denotes Quantitative
R11995 T15558 T15559 amod Quantitative,analyses
R11996 T15559 T15559 ROOT analyses,analyses
R11997 T15560 T15559 prep of,analyses
R11998 T15561 T15562 det the,effect
R11999 T15562 T15560 pobj effect,of
R12000 T15563 T15562 prep of,effect
R12001 T15564 T15565 amod sTNFp55R,infusion
R12002 T15565 T15563 pobj infusion,of
R12003 T15566 T15562 prep on,effect
R12004 T15567 T15568 amod NF-κB,phosphorylation
R12005 T15568 T15566 pobj phosphorylation,on
R12006 T15569 T15568 cc and,phosphorylation
R12007 T15570 T15571 compound SMI-71,expression
R12008 T15571 T15568 conj expression,phosphorylation
R12009 T15572 T15559 punct .,analyses
R12010 T15573 T15574 punct (,A
R12011 T15574 T15574 ROOT A,A
R12012 T15575 T15574 punct ),A
R12013 T15576 T15577 amod Quantitative,analysis
R12014 T15577 T15577 ROOT analysis,analysis
R12015 T15578 T15577 prep of,analysis
R12016 T15579 T15582 amod NF-κB,hr
R12017 T15580 T15582 nmod phosphorylation,hr
R12018 T15581 T15582 nummod 12,hr
R12019 T15582 T15578 pobj hr,of
R12020 T15583 T15577 prep after,analysis
R12021 T15584 T15583 pobj SE,after
R12022 T15585 T15588 punct (,S.E.M
R12023 T15586 T15588 amod mean,S.E.M
R12024 T15587 T15588 compound ±,S.E.M
R12025 T15588 T15584 appos S.E.M,SE
R12026 T15589 T15588 punct ),S.E.M
R12027 T15590 T15577 punct .,analysis
R12028 T15591 T15592 amod Significant,differences
R12029 T15592 T15598 dep differences,p
R12030 T15593 T15592 prep from,differences
R12031 T15594 T15595 amod saline-infused,animals
R12032 T15595 T15593 pobj animals,from
R12033 T15596 T15592 punct ",",differences
R12034 T15597 T15592 punct *,differences
R12035 T15598 T15598 ROOT p,p
R12036 T15599 T15600 nmod <,0.05
R12037 T15600 T15598 npadvmod 0.05,p
R12038 T15601 T15598 punct .,p
R12039 T15602 T15603 punct (,B
R12040 T15603 T15603 ROOT B,B
R12041 T15604 T15603 punct ),B
R12042 T15605 T15606 amod Quantitative,analysis
R12043 T15606 T15606 ROOT analysis,analysis
R12044 T15607 T15606 prep of,analysis
R12045 T15608 T15609 compound SMI-71,expression
R12046 T15609 T15607 pobj expression,of
R12047 T15610 T15611 nummod 1,day
R12048 T15611 T15606 npadvmod day,analysis
R12049 T15612 T15611 prep after,day
R12050 T15613 T15612 pobj SE,after
R12051 T15614 T15617 punct (,S.E.M
R12052 T15615 T15617 amod mean,S.E.M
R12053 T15616 T15617 compound ±,S.E.M
R12054 T15617 T15613 appos S.E.M,SE
R12055 T15618 T15617 punct ),S.E.M
R12056 T15619 T15606 punct .,analysis
R12057 T15620 T15621 amod Significant,differences
R12058 T15621 T15627 dep differences,p
R12059 T15622 T15621 prep from,differences
R12060 T15623 T15624 amod saline-infused,animals
R12061 T15624 T15622 pobj animals,from
R12062 T15625 T15621 punct ",",differences
R12063 T15626 T15621 punct *,differences
R12064 T15627 T15627 ROOT p,p
R12065 T15628 T15629 nmod <,0.05
R12066 T15629 T15627 npadvmod 0.05,p
R12067 T15630 T15627 punct .,p
R12068 T15631 T15636 punct (,analysis
R12069 T15632 T15636 nmod C,analysis
R12070 T15633 T15632 punct ),C
R12071 T15634 T15636 compound Linear,analysis
R12072 T15635 T15636 compound regression,analysis
R12073 T15636 T15636 ROOT analysis,analysis
R12074 T15637 T15636 prep between,analysis
R12075 T15638 T15639 amod p65-Thr435,phosphorylation
R12076 T15639 T15637 pobj phosphorylation,between
R12077 T15640 T15639 cc and,phosphorylation
R12078 T15641 T15639 conj SMI-71,phosphorylation
R12079 T15642 T15639 prep in,phosphorylation
R12080 T15643 T15644 det the,PC
R12081 T15644 T15642 pobj PC,in
R12082 T15645 T15636 prep following,analysis
R12083 T15646 T15645 pobj SE,following
R12084 T15647 T15636 punct .,analysis

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T15666 443-458 Phosphorylation denotes phosphorylation
T15665 443-458 Phosphorylation denotes phosphorylation
T15664 436-442 Protein denotes Thr435
T15663 432-435 Protein denotes p65
T15662 140-155 Phosphorylation denotes phosphorylation
T15661 134-139 Protein denotes NF-κB
T15660 29-35 Regulation denotes effect
T15659 66-81 Phosphorylation denotes phosphorylation
T15658 60-65 Protein denotes NF-κB
T15657 39-47 Protein denotes sTNFp55R
R12088 T15658 T15659 themeOf NF-κB,phosphorylation
R12089 T15659 T15660 themeOf phosphorylation,effect
R12090 T15661 T15662 themeOf NF-κB,phosphorylation
R12091 T15663 T15665 themeOf p65,phosphorylation
R12092 T15664 T15666 themeOf Thr435,phosphorylation

testone

Id Subject Object Predicate Lexical cue
T15453 443-458 Phosphorylation denotes phosphorylation
T15452 287-297 Gene_expression denotes expression
T15451 93-103 Gene_expression denotes expression
T15450 29-35 Regulation denotes effect
T15449 432-435 Protein denotes p65
T15448 40-47 Protein denotes TNFp55R
R11913 T15449 T15453 themeOf p65,phosphorylation
R11914 T15451 T15450 themeOf expression,effect

test3

Id Subject Object Predicate Lexical cue
T15459 443-458 Phosphorylation denotes phosphorylation
T15458 432-435 Protein denotes p65
T15457 93-103 Gene_expression denotes expression
T15456 39-47 Protein denotes sTNFp55R
T15455 432-435 Protein denotes p65
T15454 40-47 Protein denotes TNFp55R
R11915 T15458 T15459 themeOf p65,phosphorylation