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PMC:3312845 / 22221-22314 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T15154 63-78 NN denotes -Ser311 (D) pho
T15159 90-93 RB denotes , w
T15158 86-90 VB denotes tion
T15157 84-86 PRP denotes la
T15156 79-84 IN denotes phory
T15155 78-79 -COMMA- denotes s
T15153 62-63 -RRB- denotes 5
T15152 61-62 NN denotes 6
T15151 60-61 -LRB- denotes p
T15150 49-59 NN denotes 76 (B) and
T15149 46-49 CC denotes er2
T15148 45-46 -RRB- denotes S
T15147 44-45 NN denotes -
T15146 43-44 -LRB- denotes 5
T15145 33-43 NN denotes reduces p6
T15144 26-33 VB denotes tively
T15143 15-26 RB denotes nd H) effec
T15142 14-15 -RRB- denotes a
T15141 12-13 NN denotes F
T15140 9-12 CC denotes D,
T15139 7-8 NN denotes ,
T15138 6-7 -COMMA- denotes B
T15137 5-6 NNP denotes (
T15136 3-4 -COMMA- denotes n
T15135 2-3 NN denotes o
T15134 1-2 -LRB- denotes i
R11682 T15135 T15134 arg2Of o,i
R11683 T15135 T15136 arg1Of o,n
R11684 T15135 T15138 arg1Of o,B
R11685 T15137 T15136 arg2Of (,n
R11686 T15139 T15140 arg1Of ",","D, "
R11687 T15140 T15138 arg2Of "D, ",B
R11688 T15141 T15140 arg2Of F,"D, "
R11689 T15142 T15134 arg3Of a,i
R11691 T15144 T15143 arg1Of tively ,nd H) effec
R11692 T15144 T15155 arg1Of tively ,s
R11693 T15144 T15156 arg1Of tively ,phory
R11694 T15145 T15146 arg1Of reduces p6,5
R11695 T15145 T15149 arg1Of reduces p6,er2
R11696 T15147 T15146 arg2Of -,5
R11697 T15148 T15146 arg3Of S,5
R11698 T15149 T15144 arg2Of er2,tively
R11699 T15152 T15151 arg2Of 6,p
R11700 T15153 T15151 arg3Of 5,p
R11701 T15154 T15149 arg2Of -Ser311 (D) pho,er2
R11702 T15154 T15150 arg1Of -Ser311 (D) pho,76 (B) and
R11703 T15154 T15151 arg1Of -Ser311 (D) pho,p
R11704 T15157 T15158 arg1Of la,tion

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T15047 60-63 Protein denotes p65
T15046 41-44 Protein denotes p65

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T15191 60-63 http://www.uniprot.org/uniprot/P21579 denotes p65
T15190 41-44 http://www.uniprot.org/uniprot/P21579 denotes p65
T15183 60-63 http://www.uniprot.org/uniprot/Q04206 denotes p65
T15182 41-44 http://www.uniprot.org/uniprot/Q04206 denotes p65

GO-BP

Id Subject Object Predicate Lexical cue
T15052 75-90 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

simple1

Id Subject Object Predicate Lexical cue
T15061 60-63 Protein denotes p65
T15060 41-44 Protein denotes p65

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T15394 60-63 Protein denotes p65
T15393 41-44 Protein denotes p65
T15400 33-40 Negative_regulation denotes reduces
T15399 75-90 Phosphorylation denotes phosphorylation
R11900 T15393 T15399 themeOf p65,phosphorylation
R11901 T15394 T15399 themeOf p65,phosphorylation
R11904 T15399 T15400 themeOf phosphorylation,reduces
R11905 T15399 T15400 themeOf phosphorylation,reduces

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T15315 33-40 Negative_regulation denotes reduces
T15314 75-90 Phosphorylation denotes phosphorylation
T15310 60-63 Protein denotes p65
T15309 41-44 Protein denotes p65
R11843 T15309 T15315 themeOf p65,reduces
R11844 T15309 T15314 themeOf p65,phosphorylation
R11845 T15310 T15314 themeOf p65,phosphorylation
R11847 T15314 T15315 themeOf phosphorylation,reduces
R11848 T15314 T15315 themeOf phosphorylation,reduces

DLUT931

Id Subject Object Predicate Lexical cue
T15330 33-40 Negative_regulation denotes reduces
T15328 75-90 Phosphorylation denotes phosphorylation
T15325 60-63 Protein denotes p65
T15324 41-44 Protein denotes p65
R11852 T15324 T15328 themeOf p65,phosphorylation
R11853 T15325 T15328 themeOf p65,phosphorylation
R11855 T15328 T15330 themeOf phosphorylation,reduces
R11856 T15328 T15330 themeOf phosphorylation,reduces

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T15428 41-55 Protein denotes p65-Ser276 (B)
T15427 45-51 Entity denotes Ser276
T15418 41-55 Entity denotes p65-Ser276 (B)
T15410 60-74 Entity denotes p65-Ser311 (D)
T15409 64-70 Entity denotes Ser311
T15408 60-74 Protein denotes p65-Ser311 (D)
T15407 18-19 Entity denotes H

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T15277 90-91 , denotes ,
T15276 75-90 NN denotes phosphorylation
T15275 73-74 -RRB- denotes )
T15274 72-73 NNP denotes D
T15273 71-72 -LRB- denotes (
T15272 60-70 NNP denotes p65-Ser311
T15271 56-59 CC denotes and
T15270 54-55 -RRB- denotes )
T15269 53-54 NNP denotes B
T15268 52-53 -LRB- denotes (
T15267 41-51 NN denotes p65-Ser276
T15266 33-40 VBZ denotes reduces
T15265 21-32 RB denotes effectively
T15264 19-20 -RRB- denotes )
T15263 18-19 NNP denotes H
T15262 14-17 CC denotes and
T15261 12-13 NN denotes F
T15260 10-11 , denotes ,
T15259 9-10 NNP denotes D
T15258 7-8 , denotes ,
T15257 6-7 NNP denotes B
T15256 5-6 -LRB- denotes (
R11787 T15256 T15257 punct (,B
R11789 T15258 T15257 punct ",",B
R11790 T15259 T15257 appos D,B
R11791 T15260 T15259 punct ",",D
R11792 T15261 T15257 appos F,B
R11793 T15262 T15261 cc and,F
R11794 T15263 T15261 conj H,F
R11795 T15264 T15257 punct ),B
R11796 T15265 T15266 advmod effectively,reduces
R11797 T15266 T15266 ROOT reduces,reduces
R11798 T15267 T15266 dobj p65-Ser276,reduces
R11799 T15268 T15269 punct (,B
R11800 T15269 T15267 appos B,p65-Ser276
R11801 T15270 T15269 punct ),B
R11802 T15271 T15267 cc and,p65-Ser276
R11803 T15272 T15267 conj p65-Ser311,p65-Ser276
R11804 T15273 T15274 punct (,D
R11805 T15274 T15272 appos D,p65-Ser311
R11806 T15275 T15272 punct ),p65-Ser311
R11807 T15276 T15267 conj phosphorylation,p65-Ser276
R11808 T15277 T15266 punct ",",reduces

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T15349 33-40 Negative_regulation denotes reduces
T15348 33-40 Negative_regulation denotes reduces
T15347 75-90 Phosphorylation denotes phosphorylation
T15346 75-90 Phosphorylation denotes phosphorylation
T15345 60-70 Entity denotes p65-Ser311
T15344 45-51 Entity denotes Ser276
T15343 41-44 Protein denotes p65
R11864 T15343 T15346 themeOf p65,phosphorylation
R11865 T15343 T15347 themeOf p65,phosphorylation
R11866 T15344 T15343 SiteParent Ser276,p65
R11867 T15345 T15343 SiteParent p65-Ser311,p65
R11868 T15346 T15344 Site phosphorylation,Ser276
R11869 T15346 T15348 themeOf phosphorylation,reduces
R11870 T15347 T15345 Site phosphorylation,p65-Ser311
R11871 T15347 T15349 themeOf phosphorylation,reduces

testone

Id Subject Object Predicate Lexical cue
T14973 75-90 Phosphorylation denotes phosphorylation
T14972 64-70 Entity denotes Ser311
T14971 45-51 Entity denotes Ser276
T14970 33-40 Negative_regulation denotes reduces
T14962 60-63 Protein denotes p65
T14961 41-44 Protein denotes p65
R11561 T14961 T14973 themeOf p65,phosphorylation
R11562 T14962 T14973 themeOf p65,phosphorylation
R11572 T14971 T14961 partOf Ser276,p65
R11573 T14971 T14973 themeOf Ser276,phosphorylation
R11574 T14972 T14962 partOf Ser311,p65
R11575 T14972 T14973 themeOf Ser311,phosphorylation
R11576 T14972 T14961 partOf Ser311,p65
R11577 T14973 T14970 themeOf phosphorylation,reduces

test3

Id Subject Object Predicate Lexical cue
T14999 75-90 Phosphorylation denotes phosphorylation
T14998 60-63 Protein denotes p65
T14997 45-51 Entity denotes Ser276
T14996 41-44 Protein denotes p65
T14995 33-40 Negative_regulation denotes reduces
T14984 60-63 Protein denotes p65
T14983 41-44 Protein denotes p65
R11585 T14996 T14999 themeOf p65,phosphorylation
R11586 T14997 T14999 themeOf Ser276,phosphorylation
R11587 T14997 T14996 partOf Ser276,p65
R11588 T14997 T14995 themeOf Ser276,reduces
R11589 T14998 T14999 themeOf p65,phosphorylation
R11591 T14999 T14995 themeOf phosphorylation,reduces