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PMC:3312845 / 19139-19409 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T14559 267-269 NN denotes μm
T14558 265-266 -RRB- denotes )
T14557 262-265 NN denotes A-D
T14556 261-262 -LRB- denotes (
T14555 258-260 CD denotes 25
T14554 256-257 SYM denotes =
T14553 252-255 NN denotes Bar
T14552 231-232 -RRB- denotes l
T14551 225-231 NN denotes ndothe
T14550 224-225 -LRB- denotes e
T14549 219-224 NN denotes l as
T14548 208-219 JJ denotes ytes as wel
T14547 206-208 IN denotes oc
T14546 202-206 RB denotes astr
T14545 200-202 RB denotes n
T14544 190-200 NN denotes pression i
T14543 188-190 IN denotes ex
T14542 178-188 NN denotes ) TNFp75R
T14541 171-178 NN denotes ). (C-D
T14540 170-171 -RRB- denotes s
T14539 167-170 JJ denotes row
T14538 166-167 -LRB- denotes r
T14537 165-166 -RRB- denotes a
T14536 159-165 NN denotes ytes (
T14535 158-159 -LRB- denotes c
T14534 148-158 NN denotes n in astro
T14533 146-148 IN denotes io
T14532 136-146 NN denotes 5R express
T14531 129-136 NN denotes ) TNFp5
T14530 128-129 -RRB- denotes B
T14529 127-128 NN denotes (
T14528 125-126 -LRB- denotes .
T14527 124-125 -RRB- denotes )
T14526 118-124 NN denotes arrows
T14525 117-118 -LRB- denotes (
T14524 107-116 NN denotes microglia
T14523 92-106 JJ denotes Ox-42-positive
T14522 89-91 IN denotes in
T14521 72-88 NN denotes immunoreactivity
T14520 66-71 NN denotes TNF-α
T14519 64-65 -RRB- denotes )
T14518 63-64 NN denotes A
T14517 62-63 -LRB- denotes (
T14516 58-61 NNP denotes SE.
T14515 50-57 JJ denotes hr-post
T14514 47-49 CD denotes 12
T14513 44-46 NN denotes PC
T14512 40-43 DT denotes the
T14511 37-39 IN denotes in
T14510 28-36 NN denotes receptor
T14509 24-27 NN denotes TNF
T14508 20-23 CC denotes and
T14507 14-19 NN denotes TNF-α
T14506 11-13 IN denotes of
T14505 0-10 NN denotes Expression
R11226 T14505 T14506 arg1Of Expression,of
R11227 T14505 T14511 arg1Of Expression,in
R11228 T14505 T14522 arg1Of Expression,in
R11229 T14507 T14508 arg1Of TNF-α,and
R11230 T14509 T14508 arg2Of TNF,and
R11231 T14510 T14506 arg2Of receptor,of
R11232 T14510 T14507 arg1Of receptor,TNF-α
R11233 T14510 T14509 arg1Of receptor,TNF
R11234 T14518 T14517 arg2Of A,(
R11235 T14519 T14517 arg3Of ),(
R11236 T14521 T14511 arg2Of immunoreactivity,in
R11237 T14521 T14512 arg1Of immunoreactivity,the
R11238 T14521 T14513 arg1Of immunoreactivity,PC
R11239 T14521 T14514 arg1Of immunoreactivity,12
R11240 T14521 T14515 arg1Of immunoreactivity,hr-post
R11241 T14521 T14516 arg1Of immunoreactivity,SE.
R11242 T14521 T14517 arg1Of immunoreactivity,(
R11243 T14521 T14520 arg1Of immunoreactivity,TNF-α
R11244 T14524 T14522 arg2Of microglia,in
R11245 T14524 T14523 arg1Of microglia,Ox-42-positive
R11246 T14524 T14525 arg1Of microglia,(
R11247 T14526 T14525 arg2Of arrows,(
R11248 T14527 T14525 arg3Of ),(
R11249 T14529 T14528 arg2Of (,.
R11250 T14530 T14528 arg3Of B,.
R11251 T14532 T14505 arg1Of 5R express,Expression
R11252 T14532 T14528 arg1Of 5R express,.
R11253 T14532 T14531 arg1Of 5R express,) TNFp5
R11254 T14532 T14533 arg1Of 5R express,io
R11255 T14532 T14543 arg1Of 5R express,ex
R11256 T14536 T14535 arg2Of ytes (,c
R11257 T14537 T14535 arg3Of a,c
R11258 T14539 T14538 arg2Of row,r
R11259 T14540 T14538 arg3Of s,r
R11260 T14542 T14533 arg2Of ) TNFp75R ,io
R11261 T14542 T14534 arg1Of ) TNFp75R ,n in astro
R11262 T14542 T14535 arg1Of ) TNFp75R ,c
R11263 T14542 T14538 arg1Of ) TNFp75R ,r
R11264 T14542 T14541 arg1Of ) TNFp75R ,). (C-D
R11265 T14544 T14547 arg1Of pression i,oc
R11266 T14547 T14543 arg2Of oc,ex
R11267 T14547 T14545 arg1Of oc,n
R11268 T14547 T14546 arg1Of oc,astr
R11269 T14549 T14547 arg2Of l as ,oc
R11270 T14549 T14548 arg1Of l as ,ytes as wel
R11271 T14549 T14550 arg1Of l as ,e
R11272 T14551 T14550 arg2Of ndothe,e
R11273 T14552 T14550 arg3Of l,e
R11274 T14557 T14556 arg2Of A-D,(
R11275 T14558 T14556 arg3Of ),(
R11276 T14559 T14553 arg1Of μm,Bar
R11277 T14559 T14554 arg1Of μm,=
R11278 T14559 T14555 arg1Of μm,25
R11279 T14559 T14556 arg1Of μm,(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T14499 180-187 Protein denotes TNFp75R
T14498 131-138 Protein denotes TNFp55R
T14497 66-71 Protein denotes TNF-α
T14496 14-19 Protein denotes TNF-α

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T14572 66-71 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T14571 14-19 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T14570 24-27 http://www.uniprot.org/uniprot/P01375 denotes TNF
T14569 14-17 http://www.uniprot.org/uniprot/P01375 denotes TNF

GO-CC

Id Subject Object Predicate Lexical cue
T14500 236-241 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T14489 252-270 Sentence denotes Bar = 25 (A-D) μm.
T14488 0-251 Sentence denotes Expression of TNF-α and TNF receptor in the PC 12 hr-post SE. (A) TNF-α immunoreactivity in Ox-42-positive microglia (arrows). (B) TNFp55R expression in astrocytes (arrows). (C-D) TNFp75R expression in astrocytes as well as endothelial cells (arrows).
T152 252-270 Sentence denotes Bar = 25 (A-D) μm.

simple1

Id Subject Object Predicate Lexical cue
T14504 180-187 Protein denotes TNFp75R
T14503 131-138 Protein denotes TNFp55R
T14502 66-71 Protein denotes TNF-α
T14501 14-19 Protein denotes TNF-α

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14669 188-198 Gene_expression denotes expression
T14668 139-149 Gene_expression denotes expression
T14667 0-10 Gene_expression denotes Expression
T14666 180-187 Protein denotes TNFp75R
T14665 131-138 Protein denotes TNFp55R
T14664 66-71 Protein denotes TNF-α
T14663 14-19 Protein denotes TNF-α
R11357 T14663 T14667 themeOf TNF-α,Expression
R11358 T14665 T14668 themeOf TNFp55R,expression
R11359 T14666 T14669 themeOf TNFp75R,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T14627 180-187 Protein denotes TNFp75R
T14626 131-138 Protein denotes TNFp55R
T14625 66-71 Protein denotes TNF-α
T14624 14-19 Protein denotes TNF-α
T14630 188-198 Gene_expression denotes expression
T14629 139-149 Gene_expression denotes expression
T14628 0-10 Gene_expression denotes Expression
R11340 T14624 T14628 themeOf TNF-α,Expression
R11341 T14626 T14629 themeOf TNFp55R,expression
R11342 T14627 T14630 themeOf TNFp75R,expression

DLUT931

Id Subject Object Predicate Lexical cue
T14637 188-198 Gene_expression denotes expression
T14636 139-149 Gene_expression denotes expression
T14635 0-10 Gene_expression denotes Expression
T14634 180-187 Protein denotes TNFp75R
T14633 131-138 Protein denotes TNFp55R
T14632 66-71 Protein denotes TNF-α
T14631 14-19 Protein denotes TNF-α
R11343 T14631 T14635 themeOf TNF-α,Expression
R11344 T14633 T14636 themeOf TNFp55R,expression
R11345 T14634 T14637 themeOf TNFp75R,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T14686 0-57 Gene_expression denotes Expression of TNF-α and TNF receptor in the PC 12 hr-post
T14685 0-57 Gene_expression denotes Expression of TNF-α and TNF receptor in the PC 12 hr-post
T14684 131-172 Gene_expression denotes TNFp55R expression in astrocytes (arrows)
T14683 180-250 Gene_expression denotes TNFp75R expression in astrocytes as well as endothelial cells (arrows)
T14682 131-138 Protein denotes TNFp55R
T14681 24-27 Protein denotes TNF
T14680 153-172 Entity denotes astrocytes (arrows)
T14679 44-46 Protein denotes PC
T14678 252-257 Entity denotes Bar =
T14677 224-250 Entity denotes endothelial cells (arrows)
T14676 66-71 Protein denotes TNF-α
T14675 180-187 Protein denotes TNFp75R
T14674 14-19 Protein denotes TNF-α
T14673 89-125 Entity denotes in Ox-42-positive microglia (arrows)
T14672 58-60 Protein denotes SE
T14671 24-36 Protein denotes TNF receptor
T14670 202-212 Entity denotes astrocytes
R11360 T14671 T14686 themeOf TNF receptor,Expression of TNF-α and TNF receptor in the PC 12 hr-post
R11361 T14674 T14685 themeOf TNF-α,Expression of TNF-α and TNF receptor in the PC 12 hr-post
R11362 T14675 T14683 themeOf TNFp75R,TNFp75R expression in astrocytes as well as endothelial cells (arrows)
R11363 T14682 T14684 themeOf TNFp55R,TNFp55R expression in astrocytes (arrows)

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T14623 269-270 . denotes .
T14622 267-269 NN denotes μm
T14621 265-266 -RRB- denotes )
T14620 262-265 NNP denotes A-D
T14619 261-262 -LRB- denotes (
T14618 258-260 CD denotes 25
T14617 256-257 SYM denotes =
T14616 252-255 NN denotes Bar
T14615 250-251 . denotes .
T14614 249-250 -RRB- denotes )
T14613 243-249 NNS denotes arrows
T14612 242-243 -LRB- denotes (
T14611 236-241 NNS denotes cells
T14610 224-235 JJ denotes endothelial
T14609 221-223 IN denotes as
T14608 216-220 RB denotes well
T14607 213-215 RB denotes as
T14606 202-212 NNS denotes astrocytes
T14605 199-201 IN denotes in
T14604 188-198 NN denotes expression
T14603 180-187 JJ denotes TNFp75R
T14602 178-179 -RRB- denotes )
T14601 175-178 NNP denotes C-D
T14600 174-175 -LRB- denotes (
T14599 172-173 . denotes .
T14598 171-172 -RRB- denotes )
T14597 165-171 NNS denotes arrows
T14596 164-165 -LRB- denotes (
T14595 153-163 NNS denotes astrocytes
T14594 150-152 IN denotes in
T14593 139-149 NN denotes expression
T14592 131-138 JJ denotes TNFp55R
T14591 129-130 -RRB- denotes )
T14590 128-129 NNP denotes B
T14589 127-128 -LRB- denotes (
T14588 125-126 . denotes .
T14587 124-125 -RRB- denotes )
T14586 118-124 NNS denotes arrows
T14585 117-118 -LRB- denotes (
T14584 107-116 NN denotes microglia
T14583 92-106 JJ denotes Ox-42-positive
T14582 89-91 IN denotes in
T14581 72-88 NN denotes immunoreactivity
T14580 66-71 JJ denotes TNF-α
T14579 64-65 -RRB- denotes )
T14578 63-64 NNP denotes A
T14577 62-63 -LRB- denotes (
T14576 60-61 . denotes .
T14575 58-60 NNP denotes SE
T14574 50-57 JJ denotes hr-post
T14567 40-43 DT denotes the
T14566 37-39 IN denotes in
T14565 28-36 NN denotes receptor
T14564 24-27 NNP denotes TNF
T14563 20-23 CC denotes and
T14562 14-19 NNP denotes TNF-α
T14561 11-13 IN denotes of
T14560 0-10 NN denotes Expression
T14568 44-46 NN denotes PC
T14573 47-49 CD denotes 12
R11280 T14560 T14560 ROOT Expression,Expression
R11281 T14561 T14560 prep of,Expression
R11282 T14562 T14561 pobj TNF-α,of
R11283 T14563 T14562 cc and,TNF-α
R11284 T14564 T14565 compound TNF,receptor
R11285 T14565 T14560 appos receptor,Expression
R11286 T14566 T14565 prep in,receptor
R11287 T14567 T14575 det the,SE
R11288 T14568 T14575 nmod PC,SE
R11289 T14573 T14574 nummod 12,hr-post
R11290 T14574 T14575 amod hr-post,SE
R11291 T14575 T14566 pobj SE,in
R11292 T14576 T14560 punct .,Expression
R11293 T14577 T14578 punct (,A
R11294 T14578 T14578 ROOT A,A
R11295 T14579 T14578 punct ),A
R11296 T14580 T14581 amod TNF-α,immunoreactivity
R11297 T14581 T14581 ROOT immunoreactivity,immunoreactivity
R11298 T14582 T14581 prep in,immunoreactivity
R11299 T14583 T14584 amod Ox-42-positive,microglia
R11300 T14584 T14582 pobj microglia,in
R11301 T14585 T14586 punct (,arrows
R11302 T14586 T14581 appos arrows,immunoreactivity
R11303 T14587 T14586 punct ),arrows
R11304 T14588 T14581 punct .,immunoreactivity
R11305 T14589 T14590 punct (,B
R11306 T14590 T14593 nmod B,expression
R11307 T14591 T14590 punct ),B
R11308 T14592 T14593 amod TNFp55R,expression
R11309 T14593 T14593 ROOT expression,expression
R11310 T14594 T14593 prep in,expression
R11311 T14595 T14594 pobj astrocytes,in
R11312 T14596 T14597 punct (,arrows
R11313 T14597 T14595 appos arrows,astrocytes
R11314 T14598 T14595 punct ),astrocytes
R11315 T14599 T14593 punct .,expression
R11316 T14600 T14601 punct (,C-D
R11317 T14601 T14604 nmod C-D,expression
R11318 T14602 T14601 punct ),C-D
R11319 T14603 T14604 amod TNFp75R,expression
R11320 T14604 T14604 ROOT expression,expression
R11321 T14605 T14604 prep in,expression
R11322 T14606 T14605 pobj astrocytes,in
R11323 T14607 T14609 advmod as,as
R11324 T14608 T14609 advmod well,as
R11325 T14609 T14604 cc as,expression
R11326 T14610 T14611 amod endothelial,cells
R11327 T14611 T14604 conj cells,expression
R11328 T14612 T14611 punct (,cells
R11329 T14613 T14611 appos arrows,cells
R11330 T14614 T14611 punct ),cells
R11331 T14615 T14604 punct .,expression
R11332 T14616 T14616 ROOT Bar,Bar
R11333 T14617 T14618 punct =,25
R11334 T14618 T14616 nummod 25,Bar
R11335 T14619 T14616 punct (,Bar
R11336 T14620 T14616 appos A-D,Bar
R11337 T14621 T14616 punct ),Bar
R11338 T14622 T14622 ROOT μm,μm
R11339 T14623 T14622 punct .,μm

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T14650 131-138 Protein denotes TNFp55R
T14649 66-71 Protein denotes TNF-α
T14648 0-10 Gene_expression denotes Expression
T14647 0-10 Gene_expression denotes Expression
T14646 24-36 Protein denotes TNF receptor
T14645 14-19 Protein denotes TNF-α
T14653 188-198 Gene_expression denotes expression
T14652 180-187 Protein denotes TNFp75R
T14651 139-149 Gene_expression denotes expression
R11349 T14645 T14647 themeOf TNF-α,Expression
R11350 T14646 T14648 themeOf TNF receptor,Expression
R11351 T14650 T14651 themeOf TNFp55R,expression
R11352 T14652 T14653 themeOf TNFp75R,expression

testone

Id Subject Object Predicate Lexical cue
T14477 188-198 Gene_expression denotes expression
T14476 98-106 Gene_expression denotes positive
T14475 0-10 Gene_expression denotes Expression
T14474 180-187 Protein denotes TNFp75R
T14473 131-138 Protein denotes TNFp55R
T14472 66-71 Protein denotes TNF-α
T14471 14-19 Protein denotes TNF-α
R11221 T14471 T14475 themeOf TNF-α,Expression
R11222 T14474 T14477 themeOf TNFp75R,expression

test3

Id Subject Object Predicate Lexical cue
T14487 180-187 Protein denotes TNFp75R
T14486 131-138 Protein denotes TNFp55R
T14485 98-106 Gene_expression denotes positive
T14484 66-71 Protein denotes TNF-α
T14483 14-19 Protein denotes TNF-α
T14482 0-10 Gene_expression denotes Expression
T14481 180-187 Protein denotes TNFp75R
T14480 131-138 Protein denotes TNFp55R
T14479 66-71 Protein denotes TNF-α
T14478 14-19 Protein denotes TNF-α
R11223 T14483 T14482 themeOf TNF-α,Expression