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PMC:3312845 / 1597-1947 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22240205-7560020-63147394 308-309 7560020 denotes 1

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1291 335-345 JJ denotes continuous
T1290 332-334 IN denotes as
T1289 324-331 VB denotes defined
T1288 319-323 VB denotes been
T1287 315-318 VB denotes has
T1286 312-314 NN denotes SE
T1285 309-310 -RRB- denotes ]
T1284 308-309 CD denotes 1
T1283 307-308 -LRB- denotes [
T1282 297-306 NN denotes mortality
T1281 285-296 JJ denotes significant
T1280 280-284 IN denotes with
T1279 270-279 NN denotes emergency
T1278 262-269 JJ denotes medical
T1277 260-261 DT denotes a
T1276 257-259 VB denotes is
T1275 255-256 -RRB- denotes )
T1274 253-255 NN denotes SE
T1273 252-253 -LRB- denotes (
T457 215-219 NN denotes loss
T456 195-214 JJ denotes neuronal-astroglial
T455 191-194 CC denotes and
T454 178-190 NN denotes infiltration
T453 167-177 NN denotes neutrophil
T452 157-166 JJ denotes extensive
T451 154-156 IN denotes in
T450 146-153 VB denotes results
T449 140-145 NN denotes edema
T448 130-139 JJ denotes vasogenic
T447 128-129 -COMMA- denotes ,
T446 116-128 RB denotes Subsequently
T445 109-114 NN denotes edema
T444 99-108 JJ denotes vasogenic
T443 88-98 JJ denotes SE-induced
T442 85-87 IN denotes in
T441 76-84 VB denotes involved
T440 73-75 VB denotes be
T439 69-72 MD denotes may
T438 53-68 NN denotes phosphorylation
T437 47-52 NN denotes NF-κB
T436 43-46 CD denotes 485
T435 35-42 NN denotes p65-Thr
T434 20-34 JJ denotes TNF-α-mediated
T433 16-19 IN denotes via
T432 6-15 NN denotes functions
T431 1-5 NN denotes cell
T1271 233-239 NN denotes Status
T1272 240-251 NN denotes epilepticus
R261 T432 T431 arg1Of functions,cell
R262 T438 T433 arg2Of phosphorylation,via
R263 T438 T434 arg1Of phosphorylation,TNF-α-mediated
R264 T438 T435 arg1Of phosphorylation,p65-Thr
R265 T438 T436 arg1Of phosphorylation,485
R266 T438 T437 arg1Of phosphorylation,NF-κB
R269 T441 T439 arg2Of involved,may
R270 T441 T440 arg2Of involved,be
R271 T441 T442 arg1Of involved,in
R272 T445 T442 arg2Of edema,in
R273 T445 T443 arg1Of edema,SE-induced
R274 T445 T444 arg1Of edema,vasogenic
R275 T449 T448 arg1Of edema,vasogenic
R276 T449 T450 arg1Of edema,results
R277 T450 T446 arg1Of results,Subsequently
R278 T450 T447 arg1Of results,","
R279 T450 T451 arg1Of results,in
R280 T454 T452 arg1Of infiltration,extensive
R281 T454 T453 arg1Of infiltration,neutrophil
R282 T454 T455 arg1Of infiltration,and
R283 T455 T451 arg2Of and,in
R284 T457 T455 arg2Of loss,and
R285 T457 T456 arg1Of loss,neuronal-astroglial
R711 T1272 T1271 arg1Of epilepticus,Status
R712 T1272 T1273 arg1Of epilepticus,(
R713 T1272 T1276 arg1Of epilepticus,is
R714 T1274 T1273 arg2Of SE,(
R715 T1275 T1273 arg3Of ),(
R716 T1279 T1276 arg2Of emergency,is
R717 T1279 T1277 arg1Of emergency,a
R718 T1279 T1278 arg1Of emergency,medical
R719 T1279 T1280 arg1Of emergency,with
R720 T1282 T1280 arg2Of mortality,with
R721 T1282 T1281 arg1Of mortality,significant
R722 T1282 T1283 arg1Of mortality,[
R723 T1284 T1283 arg2Of 1,[
R724 T1285 T1283 arg3Of ],[
R725 T1286 T1287 arg1Of SE,has
R726 T1286 T1288 arg1Of SE,been
R727 T1286 T1289 arg2Of SE,defined
R728 T1289 T1287 arg2Of defined,has
R729 T1289 T1288 arg2Of defined,been
R730 T1289 T1290 arg1Of defined,as

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T159 20-25 Protein denotes TNF-α
T160 35-38 Protein denotes p65

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T477 20-25 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T461 35-38 http://www.uniprot.org/uniprot/Q04206 denotes p65
T465 35-38 http://www.uniprot.org/uniprot/P21579 denotes p65

UBERON-AE

Id Subject Object Predicate Lexical cue
T101 157-166 http://purl.obolibrary.org/obo/UBERON_2000106 denotes extensive

GO-BP

Id Subject Object Predicate Lexical cue
T173 47-68 http://purl.obolibrary.org/obo/GO_0007252 denotes NF-κB phosphorylation
T172 53-68 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T184 1-5 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T117 116-220 Sentence denotes Subsequently, vasogenic edema results in extensive neutrophil infiltration and neuronal-astroglial loss.
T1140 233-311 Sentence denotes Status epilepticus (SE) is a medical emergency with significant mortality [1].
T17 116-220 Sentence denotes Subsequently, vasogenic edema results in extensive neutrophil infiltration and neuronal-astroglial loss.
T18 222-232 Sentence denotes Background
T19 233-311 Sentence denotes Status epilepticus (SE) is a medical emergency with significant mortality [1].

ICD10

Id Subject Object Predicate Lexical cue
T1233 233-251 http://purl.bioontology.org/ontology/ICD10/G41 denotes Status epilepticus
T1232 233-251 http://purl.bioontology.org/ontology/ICD10/G41.9 denotes Status epilepticus

simple1

Id Subject Object Predicate Lexical cue
T200 35-38 Protein denotes p65
T199 20-25 Protein denotes TNF-α

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T923 20-25 Protein denotes TNF-α
T924 35-38 Protein denotes p65

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T765 35-38 Protein denotes p65
T764 20-25 Protein denotes TNF-α
T775 53-68 Phosphorylation denotes phosphorylation
T774 26-34 Positive_regulation denotes mediated
R560 T764 T774 causeOf TNF-α,mediated
R561 T765 T774 themeOf p65,mediated
R562 T765 T775 themeOf p65,phosphorylation

DLUT931

Id Subject Object Predicate Lexical cue
T819 26-34 Positive_regulation denotes mediated
T818 53-68 Phosphorylation denotes phosphorylation
T806 20-25 Protein denotes TNF-α
T807 35-38 Protein denotes p65
R567 T818 T819 themeOf phosphorylation,mediated
R630 T806 T819 causeOf TNF-α,mediated
R631 T807 T818 themeOf p65,phosphorylation

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2887 253-255 Entity denotes SE
T2859 312-314 Protein denotes SE
T990 20-68 Phosphorylation denotes TNF-α-mediated p65-Thr 485 NF-κB phosphorylation
T984 20-68 Regulation denotes TNF-α-mediated p65-Thr 485 NF-κB phosphorylation
T976 20-68 Entity denotes TNF-α-mediated p65-Thr 485 NF-κB phosphorylation
T973 47-52 Protein denotes NF-κB
T937 167-177 Entity denotes neutrophil
T945 88-98 Entity denotes SE-induced
T946 20-68 Protein denotes TNF-α-mediated p65-Thr 485 NF-κB phosphorylation
T956 20-34 Protein denotes TNF-α-mediated
R602 T973 T990 themeOf NF-κB,TNF-α-mediated p65-Thr 485 NF-κB phosphorylation
R603 T976 T973 partOf TNF-α-mediated p65-Thr 485 NF-κB phosphorylation,NF-κB
R604 T976 T990 siteOf TNF-α-mediated p65-Thr 485 NF-κB phosphorylation,TNF-α-mediated p65-Thr 485 NF-κB phosphorylation
R606 T990 T984 themeOf TNF-α-mediated p65-Thr 485 NF-κB phosphorylation,TNF-α-mediated p65-Thr 485 NF-κB phosphorylation
R659 T956 T984 causeOf TNF-α-mediated,TNF-α-mediated p65-Thr 485 NF-κB phosphorylation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1984 335-345 JJ denotes continuous
T1983 332-334 IN denotes as
T1982 324-331 VBN denotes defined
T1981 319-323 VBN denotes been
T1980 315-318 VBZ denotes has
T1979 312-314 NNP denotes SE
T1978 310-311 . denotes .
T1977 309-310 NNP denotes ]
T1976 308-309 CD denotes 1
T1975 307-308 NNP denotes [
T1974 297-306 NN denotes mortality
T1973 285-296 JJ denotes significant
T1972 280-284 IN denotes with
T1971 270-279 NN denotes emergency
T1970 262-269 JJ denotes medical
T1969 260-261 DT denotes a
T1968 257-259 VBZ denotes is
T1967 255-256 -RRB- denotes )
T1966 253-255 FW denotes SE
T1965 252-253 -LRB- denotes (
T1964 240-251 NN denotes epilepticus
T1963 233-239 NN denotes Status
T749 219-220 . denotes .
T748 215-219 NN denotes loss
T747 195-214 JJ denotes neuronal-astroglial
T746 191-194 CC denotes and
T745 178-190 NN denotes infiltration
T744 167-177 NN denotes neutrophil
T743 157-166 JJ denotes extensive
T742 154-156 IN denotes in
T741 146-153 NNS denotes results
T740 140-145 NN denotes edema
T739 130-139 JJ denotes vasogenic
T738 128-129 , denotes ,
T737 116-128 RB denotes Subsequently
T736 114-115 . denotes .
T735 109-114 NN denotes edema
T734 99-108 JJ denotes vasogenic
T733 88-98 JJ denotes SE-induced
T732 85-87 IN denotes in
T731 76-84 VBN denotes involved
T730 73-75 VB denotes be
T729 69-72 MD denotes may
T728 53-68 NN denotes phosphorylation
T727 47-52 NN denotes NF-κB
T726 43-46 CD denotes 485
T725 35-42 NN denotes p65-Thr
T724 20-34 JJ denotes TNF-α-mediated
T723 16-19 IN denotes via
T722 6-15 NNS denotes functions
T721 1-5 NN denotes cell
R530 T724 T728 amod TNF-α-mediated,phosphorylation
R531 T725 T728 nmod p65-Thr,phosphorylation
R553 T747 T748 amod neuronal-astroglial,loss
R554 T748 T745 conj loss,infiltration
R555 T749 T741 punct .,results
R1379 T1963 T1964 compound Status,epilepticus
R1380 T1964 T1968 nsubj epilepticus,is
R1381 T1965 T1966 punct (,SE
R1382 T1966 T1964 appos SE,epilepticus
R532 T726 T728 nummod 485,phosphorylation
R533 T727 T728 compound NF-κB,phosphorylation
R534 T728 T723 pobj phosphorylation,via
R535 T729 T731 aux may,involved
R536 T730 T731 auxpass be,involved
R538 T732 T731 prep in,involved
R539 T733 T735 amod SE-induced,edema
R540 T734 T735 amod vasogenic,edema
R541 T735 T732 pobj edema,in
R543 T737 T741 advmod Subsequently,results
R544 T738 T741 punct ",",results
R545 T739 T741 amod vasogenic,results
R546 T740 T741 compound edema,results
R547 T741 T741 ROOT results,results
R548 T742 T741 prep in,results
R549 T743 T745 amod extensive,infiltration
R550 T744 T745 compound neutrophil,infiltration
R551 T745 T742 pobj infiltration,in
R552 T746 T745 cc and,infiltration
R1383 T1967 T1964 punct ),epilepticus
R1384 T1968 T1968 ROOT is,is
R1385 T1969 T1971 det a,emergency
R1386 T1970 T1971 amod medical,emergency
R1387 T1971 T1968 attr emergency,is
R1388 T1972 T1971 prep with,emergency
R1389 T1973 T1974 amod significant,mortality
R1390 T1974 T1972 pobj mortality,with
R1391 T1975 T1977 nmod [,]
R1392 T1976 T1977 nummod 1,]
R1393 T1977 T1971 appos ],emergency
R1394 T1978 T1968 punct .,is
R1395 T1979 T1982 nsubjpass SE,defined
R1397 T1980 T1982 aux has,defined
R1399 T1981 T1982 auxpass been,defined
R1402 T1982 T1982 ROOT defined,defined
R1405 T1983 T1982 prep as,defined
R527 T721 T722 compound cell,functions

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T874 53-68 Phosphorylation denotes phosphorylation
T873 53-68 Phosphorylation denotes phosphorylation
T872 50-52 Protein denotes κB
T871 20-49 Protein denotes TNF-α-mediated p65-Thr 485 NF
R580 T871 T873 themeOf TNF-α-mediated p65-Thr 485 NF,phosphorylation
R581 T872 T874 themeOf κB,phosphorylation

testone

Id Subject Object Predicate Lexical cue
T31 20-25 Protein denotes TNF-α
T32 35-38 Protein denotes p65
T47 26-34 Positive_regulation denotes mediated
T48 53-68 Phosphorylation denotes phosphorylation
R9 T31 T47 causeOf TNF-α,mediated
R10 T32 T48 themeOf p65,phosphorylation
R15 T48 T47 themeOf phosphorylation,mediated

test3

Id Subject Object Predicate Lexical cue
T93 53-68 Phosphorylation denotes phosphorylation
T92 35-38 Protein denotes p65
T91 26-34 Positive_regulation denotes mediated
T90 20-25 Protein denotes TNF-α
T63 20-25 Protein denotes TNF-α
T64 35-38 Protein denotes p65
R33 T93 T91 themeOf phosphorylation,mediated
R31 T90 T91 causeOf TNF-α,mediated
R32 T92 T93 themeOf p65,phosphorylation