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PMC:3312845 / 1588-1698 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T443 97-107 JJ denotes SE-induced
T442 94-96 IN denotes in
T441 85-93 VB denotes involved
T440 82-84 VB denotes be
T439 78-81 MD denotes may
T438 62-77 NN denotes phosphorylation
T437 56-61 NN denotes NF-κB
T436 52-55 CD denotes 485
T435 44-51 NN denotes p65-Thr
T434 29-43 JJ denotes TNF-α-mediated
T433 25-28 IN denotes via
T432 15-24 NN denotes functions
T431 10-14 NN denotes cell
R261 T432 T431 arg1Of functions,cell
R262 T438 T433 arg2Of phosphorylation,via
R263 T438 T434 arg1Of phosphorylation,TNF-α-mediated
R264 T438 T435 arg1Of phosphorylation,p65-Thr
R265 T438 T436 arg1Of phosphorylation,485
R266 T438 T437 arg1Of phosphorylation,NF-κB
R269 T441 T439 arg2Of involved,may
R270 T441 T440 arg2Of involved,be
R271 T441 T442 arg1Of involved,in

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T159 29-34 Protein denotes TNF-α
T160 44-47 Protein denotes p65

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T477 29-34 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T461 44-47 http://www.uniprot.org/uniprot/Q04206 denotes p65
T465 44-47 http://www.uniprot.org/uniprot/P21579 denotes p65

GO-BP

Id Subject Object Predicate Lexical cue
T173 56-77 http://purl.obolibrary.org/obo/GO_0007252 denotes NF-κB phosphorylation
T172 62-77 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T184 10-14 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

simple1

Id Subject Object Predicate Lexical cue
T200 44-47 Protein denotes p65
T199 29-34 Protein denotes TNF-α

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T923 29-34 Protein denotes TNF-α
T924 44-47 Protein denotes p65

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T765 44-47 Protein denotes p65
T764 29-34 Protein denotes TNF-α
T775 62-77 Phosphorylation denotes phosphorylation
T774 35-43 Positive_regulation denotes mediated
R560 T764 T774 causeOf TNF-α,mediated
R561 T765 T774 themeOf p65,mediated
R562 T765 T775 themeOf p65,phosphorylation

DLUT931

Id Subject Object Predicate Lexical cue
T819 35-43 Positive_regulation denotes mediated
T818 62-77 Phosphorylation denotes phosphorylation
T806 29-34 Protein denotes TNF-α
T807 44-47 Protein denotes p65
R567 T818 T819 themeOf phosphorylation,mediated
R630 T806 T819 causeOf TNF-α,mediated
R631 T807 T818 themeOf p65,phosphorylation

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T990 29-77 Phosphorylation denotes TNF-α-mediated p65-Thr 485 NF-κB phosphorylation
T984 29-77 Regulation denotes TNF-α-mediated p65-Thr 485 NF-κB phosphorylation
T976 29-77 Entity denotes TNF-α-mediated p65-Thr 485 NF-κB phosphorylation
T973 56-61 Protein denotes NF-κB
T945 97-107 Entity denotes SE-induced
T946 29-77 Protein denotes TNF-α-mediated p65-Thr 485 NF-κB phosphorylation
T956 29-43 Protein denotes TNF-α-mediated
R602 T973 T990 themeOf NF-κB,TNF-α-mediated p65-Thr 485 NF-κB phosphorylation
R603 T976 T973 partOf TNF-α-mediated p65-Thr 485 NF-κB phosphorylation,NF-κB
R604 T976 T990 siteOf TNF-α-mediated p65-Thr 485 NF-κB phosphorylation,TNF-α-mediated p65-Thr 485 NF-κB phosphorylation
R606 T990 T984 themeOf TNF-α-mediated p65-Thr 485 NF-κB phosphorylation,TNF-α-mediated p65-Thr 485 NF-κB phosphorylation
R659 T956 T984 causeOf TNF-α-mediated,TNF-α-mediated p65-Thr 485 NF-κB phosphorylation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T733 97-107 JJ denotes SE-induced
T732 94-96 IN denotes in
T731 85-93 VBN denotes involved
T730 82-84 VB denotes be
T729 78-81 MD denotes may
T728 62-77 NN denotes phosphorylation
T727 56-61 NN denotes NF-κB
T726 52-55 CD denotes 485
T725 44-51 NN denotes p65-Thr
T724 29-43 JJ denotes TNF-α-mediated
T723 25-28 IN denotes via
T722 15-24 NNS denotes functions
T721 10-14 NN denotes cell
R530 T724 T728 amod TNF-α-mediated,phosphorylation
R531 T725 T728 nmod p65-Thr,phosphorylation
R532 T726 T728 nummod 485,phosphorylation
R533 T727 T728 compound NF-κB,phosphorylation
R534 T728 T723 pobj phosphorylation,via
R535 T729 T731 aux may,involved
R536 T730 T731 auxpass be,involved
R538 T732 T731 prep in,involved
R527 T721 T722 compound cell,functions

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T874 62-77 Phosphorylation denotes phosphorylation
T873 62-77 Phosphorylation denotes phosphorylation
T872 59-61 Protein denotes κB
T871 29-58 Protein denotes TNF-α-mediated p65-Thr 485 NF
R580 T871 T873 themeOf TNF-α-mediated p65-Thr 485 NF,phosphorylation
R581 T872 T874 themeOf κB,phosphorylation

testone

Id Subject Object Predicate Lexical cue
T31 29-34 Protein denotes TNF-α
T32 44-47 Protein denotes p65
T47 35-43 Positive_regulation denotes mediated
T48 62-77 Phosphorylation denotes phosphorylation
R9 T31 T47 causeOf TNF-α,mediated
R10 T32 T48 themeOf p65,phosphorylation
R15 T48 T47 themeOf phosphorylation,mediated

test3

Id Subject Object Predicate Lexical cue
T93 62-77 Phosphorylation denotes phosphorylation
T92 44-47 Protein denotes p65
T91 35-43 Positive_regulation denotes mediated
T90 29-34 Protein denotes TNF-α
T63 29-34 Protein denotes TNF-α
T64 44-47 Protein denotes p65
R33 T93 T91 themeOf phosphorylation,mediated
R31 T90 T91 causeOf TNF-α,mediated
R32 T92 T93 themeOf p65,phosphorylation