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PMC:3312845 / 1543-1817 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T457 269-273 NN denotes loss
T456 249-268 JJ denotes neuronal-astroglial
T455 245-248 CC denotes and
T454 232-244 NN denotes infiltration
T453 221-231 NN denotes neutrophil
T452 211-220 JJ denotes extensive
T451 208-210 IN denotes in
T450 200-207 VB denotes results
T449 194-199 NN denotes edema
T448 184-193 JJ denotes vasogenic
T447 182-183 -COMMA- denotes ,
T446 170-182 RB denotes Subsequently
T445 163-168 NN denotes edema
T444 153-162 JJ denotes vasogenic
T443 142-152 JJ denotes SE-induced
T442 139-141 IN denotes in
T441 130-138 VB denotes involved
T440 127-129 VB denotes be
T439 123-126 MD denotes may
T438 107-122 NN denotes phosphorylation
T437 101-106 NN denotes NF-κB
T436 97-100 CD denotes 485
T435 89-96 NN denotes p65-Thr
T434 74-88 JJ denotes TNF-α-mediated
T433 70-73 IN denotes via
T432 60-69 NN denotes functions
T431 55-59 NN denotes cell
T430 43-54 JJ denotes endothelial
T429 40-42 IN denotes of
T428 28-39 NN denotes impairments
T427 23-27 IN denotes that
T426 15-22 VB denotes suggest
T425 6-14 NN denotes findings
T424 0-5 DT denotes These
R252 T425 T424 arg1Of findings,These
R253 T425 T426 arg1Of findings,suggest
R254 T428 T429 arg1Of impairments,of
R255 T428 T433 arg1Of impairments,via
R256 T428 T439 arg1Of impairments,may
R257 T428 T440 arg1Of impairments,be
R258 T428 T441 arg2Of impairments,involved
R259 T432 T429 arg2Of functions,of
R260 T432 T430 arg1Of functions,endothelial
R261 T432 T431 arg1Of functions,cell
R262 T438 T433 arg2Of phosphorylation,via
R263 T438 T434 arg1Of phosphorylation,TNF-α-mediated
R264 T438 T435 arg1Of phosphorylation,p65-Thr
R265 T438 T436 arg1Of phosphorylation,485
R266 T438 T437 arg1Of phosphorylation,NF-κB
R267 T441 T426 arg2Of involved,suggest
R268 T441 T427 arg1Of involved,that
R269 T441 T439 arg2Of involved,may
R270 T441 T440 arg2Of involved,be
R271 T441 T442 arg1Of involved,in
R272 T445 T442 arg2Of edema,in
R273 T445 T443 arg1Of edema,SE-induced
R274 T445 T444 arg1Of edema,vasogenic
R275 T449 T448 arg1Of edema,vasogenic
R276 T449 T450 arg1Of edema,results
R277 T450 T446 arg1Of results,Subsequently
R278 T450 T447 arg1Of results,","
R279 T450 T451 arg1Of results,in
R280 T454 T452 arg1Of infiltration,extensive
R281 T454 T453 arg1Of infiltration,neutrophil
R282 T454 T455 arg1Of infiltration,and
R283 T455 T451 arg2Of and,in
R284 T457 T455 arg2Of loss,and
R285 T457 T456 arg1Of loss,neuronal-astroglial

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T159 74-79 Protein denotes TNF-α
T160 89-92 Protein denotes p65

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T477 74-79 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T461 89-92 http://www.uniprot.org/uniprot/Q04206 denotes p65
T465 89-92 http://www.uniprot.org/uniprot/P21579 denotes p65

UBERON-AE

Id Subject Object Predicate Lexical cue
T101 211-220 http://purl.obolibrary.org/obo/UBERON_2000106 denotes extensive

GO-BP

Id Subject Object Predicate Lexical cue
T173 101-122 http://purl.obolibrary.org/obo/GO_0007252 denotes NF-κB phosphorylation
T172 107-122 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T184 55-59 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T117 170-274 Sentence denotes Subsequently, vasogenic edema results in extensive neutrophil infiltration and neuronal-astroglial loss.
T116 0-169 Sentence denotes These findings suggest that impairments of endothelial cell functions via TNF-α-mediated p65-Thr 485 NF-κB phosphorylation may be involved in SE-induced vasogenic edema.
T16 0-169 Sentence denotes These findings suggest that impairments of endothelial cell functions via TNF-α-mediated p65-Thr 485 NF-κB phosphorylation may be involved in SE-induced vasogenic edema.
T17 170-274 Sentence denotes Subsequently, vasogenic edema results in extensive neutrophil infiltration and neuronal-astroglial loss.

simple1

Id Subject Object Predicate Lexical cue
T200 89-92 Protein denotes p65
T199 74-79 Protein denotes TNF-α

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T923 74-79 Protein denotes TNF-α
T924 89-92 Protein denotes p65

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T765 89-92 Protein denotes p65
T764 74-79 Protein denotes TNF-α
T775 107-122 Phosphorylation denotes phosphorylation
T774 80-88 Positive_regulation denotes mediated
R560 T764 T774 causeOf TNF-α,mediated
R561 T765 T774 themeOf p65,mediated
R562 T765 T775 themeOf p65,phosphorylation

DLUT931

Id Subject Object Predicate Lexical cue
T819 80-88 Positive_regulation denotes mediated
T818 107-122 Phosphorylation denotes phosphorylation
T806 74-79 Protein denotes TNF-α
T807 89-92 Protein denotes p65
R567 T818 T819 themeOf phosphorylation,mediated
R630 T806 T819 causeOf TNF-α,mediated
R631 T807 T818 themeOf p65,phosphorylation

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T990 74-122 Phosphorylation denotes TNF-α-mediated p65-Thr 485 NF-κB phosphorylation
T984 74-122 Regulation denotes TNF-α-mediated p65-Thr 485 NF-κB phosphorylation
T982 43-59 Entity denotes endothelial cell
T976 74-122 Entity denotes TNF-α-mediated p65-Thr 485 NF-κB phosphorylation
T973 101-106 Protein denotes NF-κB
T937 221-231 Entity denotes neutrophil
T945 142-152 Entity denotes SE-induced
T946 74-122 Protein denotes TNF-α-mediated p65-Thr 485 NF-κB phosphorylation
T956 74-88 Protein denotes TNF-α-mediated
R602 T973 T990 themeOf NF-κB,TNF-α-mediated p65-Thr 485 NF-κB phosphorylation
R603 T976 T973 partOf TNF-α-mediated p65-Thr 485 NF-κB phosphorylation,NF-κB
R604 T976 T990 siteOf TNF-α-mediated p65-Thr 485 NF-κB phosphorylation,TNF-α-mediated p65-Thr 485 NF-κB phosphorylation
R606 T990 T984 themeOf TNF-α-mediated p65-Thr 485 NF-κB phosphorylation,TNF-α-mediated p65-Thr 485 NF-κB phosphorylation
R659 T956 T984 causeOf TNF-α-mediated,TNF-α-mediated p65-Thr 485 NF-κB phosphorylation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T749 273-274 . denotes .
T748 269-273 NN denotes loss
T747 249-268 JJ denotes neuronal-astroglial
T746 245-248 CC denotes and
T745 232-244 NN denotes infiltration
T744 221-231 NN denotes neutrophil
T743 211-220 JJ denotes extensive
T742 208-210 IN denotes in
T741 200-207 NNS denotes results
T740 194-199 NN denotes edema
T739 184-193 JJ denotes vasogenic
T738 182-183 , denotes ,
T737 170-182 RB denotes Subsequently
T736 168-169 . denotes .
T735 163-168 NN denotes edema
T734 153-162 JJ denotes vasogenic
T733 142-152 JJ denotes SE-induced
T732 139-141 IN denotes in
T731 130-138 VBN denotes involved
T730 127-129 VB denotes be
T729 123-126 MD denotes may
T728 107-122 NN denotes phosphorylation
T727 101-106 NN denotes NF-κB
T726 97-100 CD denotes 485
T725 89-96 NN denotes p65-Thr
T724 74-88 JJ denotes TNF-α-mediated
T723 70-73 IN denotes via
T722 60-69 NNS denotes functions
T721 55-59 NN denotes cell
T720 43-54 JJ denotes endothelial
T719 40-42 IN denotes of
T718 28-39 NNS denotes impairments
T717 23-27 IN denotes that
T716 15-22 VBP denotes suggest
T715 6-14 NNS denotes findings
T714 0-5 DT denotes These
R528 T722 T719 pobj functions,of
R529 T723 T718 prep via,impairments
R530 T724 T728 amod TNF-α-mediated,phosphorylation
R531 T725 T728 nmod p65-Thr,phosphorylation
R553 T747 T748 amod neuronal-astroglial,loss
R554 T748 T745 conj loss,infiltration
R555 T749 T741 punct .,results
R532 T726 T728 nummod 485,phosphorylation
R533 T727 T728 compound NF-κB,phosphorylation
R534 T728 T723 pobj phosphorylation,via
R535 T729 T731 aux may,involved
R536 T730 T731 auxpass be,involved
R537 T731 T716 ccomp involved,suggest
R538 T732 T731 prep in,involved
R539 T733 T735 amod SE-induced,edema
R540 T734 T735 amod vasogenic,edema
R541 T735 T732 pobj edema,in
R542 T736 T716 punct .,suggest
R543 T737 T741 advmod Subsequently,results
R544 T738 T741 punct ",",results
R545 T739 T741 amod vasogenic,results
R546 T740 T741 compound edema,results
R547 T741 T741 ROOT results,results
R548 T742 T741 prep in,results
R549 T743 T745 amod extensive,infiltration
R550 T744 T745 compound neutrophil,infiltration
R551 T745 T742 pobj infiltration,in
R552 T746 T745 cc and,infiltration
R520 T714 T715 det These,findings
R521 T715 T716 nsubj findings,suggest
R522 T716 T716 ROOT suggest,suggest
R523 T717 T731 mark that,involved
R524 T718 T731 nsubjpass impairments,involved
R525 T719 T718 prep of,impairments
R526 T720 T722 amod endothelial,functions
R527 T721 T722 compound cell,functions

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T874 107-122 Phosphorylation denotes phosphorylation
T873 107-122 Phosphorylation denotes phosphorylation
T872 104-106 Protein denotes κB
T871 74-103 Protein denotes TNF-α-mediated p65-Thr 485 NF
R580 T871 T873 themeOf TNF-α-mediated p65-Thr 485 NF,phosphorylation
R581 T872 T874 themeOf κB,phosphorylation

testone

Id Subject Object Predicate Lexical cue
T31 74-79 Protein denotes TNF-α
T32 89-92 Protein denotes p65
T47 80-88 Positive_regulation denotes mediated
T48 107-122 Phosphorylation denotes phosphorylation
R9 T31 T47 causeOf TNF-α,mediated
R10 T32 T48 themeOf p65,phosphorylation
R15 T48 T47 themeOf phosphorylation,mediated

test3

Id Subject Object Predicate Lexical cue
T93 107-122 Phosphorylation denotes phosphorylation
T92 89-92 Protein denotes p65
T91 80-88 Positive_regulation denotes mediated
T90 74-79 Protein denotes TNF-α
T63 74-79 Protein denotes TNF-α
T64 89-92 Protein denotes p65
R33 T93 T91 themeOf phosphorylation,mediated
R31 T90 T91 causeOf TNF-α,mediated
R32 T92 T93 themeOf p65,phosphorylation