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PMC:3312845 / 1248-1445 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T411 191-196 NN denotes cells
T410 179-190 JJ denotes endothelial
T409 176-178 IN denotes in
T408 160-175 NN denotes phosphorylation
T407 149-159 NN denotes p65-Thr435
T406 146-148 IN denotes of
T405 135-145 NN denotes inhibition
T404 131-134 IN denotes via
T403 123-130 NN denotes damages
T402 114-122 JJ denotes neuronal
T401 110-113 CC denotes and
T400 104-109 NN denotes edema
T399 94-103 JJ denotes vasogenic
T398 83-93 JJ denotes SE-induced
T397 72-82 VB denotes attenuated
T396 63-71 NN denotes infusion
T395 61-62 -RRB- denotes )
T394 53-61 NN denotes sTNFp55R
T393 52-53 -LRB- denotes (
T392 43-51 NN denotes receptor
T391 39-42 NN denotes p55
T390 35-38 NN denotes TNF
T389 27-34 JJ denotes soluble
T388 24-26 IN denotes by
T387 18-23 NN denotes TNF-α
T386 15-17 IN denotes of
T385 0-14 NN denotes Neutralization
R215 T385 T386 arg1Of Neutralization,of
R216 T385 T388 arg1Of Neutralization,by
R217 T385 T397 arg1Of Neutralization,attenuated
R218 T387 T386 arg2Of TNF-α,of
R219 T392 T389 arg1Of receptor,soluble
R220 T392 T390 arg1Of receptor,TNF
R221 T392 T391 arg1Of receptor,p55
R222 T392 T393 arg1Of receptor,(
R223 T394 T393 arg2Of sTNFp55R,(
R224 T395 T393 arg3Of ),(
R225 T396 T388 arg2Of infusion,by
R226 T396 T392 arg1Of infusion,receptor
R227 T397 T404 arg1Of attenuated,via
R228 T399 T400 arg1Of vasogenic,edema
R229 T399 T401 arg1Of vasogenic,and
R230 T402 T401 arg2Of neuronal,and
R231 T403 T397 arg2Of damages,attenuated
R232 T403 T398 arg1Of damages,SE-induced
R233 T403 T399 arg1Of damages,vasogenic
R234 T403 T402 arg1Of damages,neuronal
R235 T405 T404 arg2Of inhibition,via
R236 T405 T406 arg1Of inhibition,of
R237 T408 T406 arg2Of phosphorylation,of
R238 T408 T407 arg1Of phosphorylation,p65-Thr435
R239 T408 T409 arg1Of phosphorylation,in
R240 T411 T409 arg2Of cells,in
R241 T411 T410 arg1Of cells,endothelial

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T154 18-23 Protein denotes TNF-α
T155 35-51 Protein denotes TNF p55 receptor
T156 54-61 Protein denotes TNFp55R
T157 149-152 Protein denotes p65

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T479 39-42 http://www.uniprot.org/uniprot/P01589 denotes p55
T476 18-23 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T460 149-152 http://www.uniprot.org/uniprot/Q04206 denotes p65
T464 149-152 http://www.uniprot.org/uniprot/P21579 denotes p65
T471 18-21 http://www.uniprot.org/uniprot/P01375 denotes TNF
T472 35-38 http://www.uniprot.org/uniprot/P01375 denotes TNF

GO-BP

Id Subject Object Predicate Lexical cue
T171 160-175 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T183 191-196 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T113 0-197 Sentence denotes Neutralization of TNF-α by soluble TNF p55 receptor (sTNFp55R) infusion attenuated SE-induced vasogenic edema and neuronal damages via inhibition of p65-Thr435 phosphorylation in endothelial cells.
T13 0-197 Sentence denotes Neutralization of TNF-α by soluble TNF p55 receptor (sTNFp55R) infusion attenuated SE-induced vasogenic edema and neuronal damages via inhibition of p65-Thr435 phosphorylation in endothelial cells.

simple1

Id Subject Object Predicate Lexical cue
T197 149-152 Protein denotes p65
T196 54-61 Protein denotes TNFp55R
T195 35-51 Protein denotes TNF p55 receptor
T194 18-23 Protein denotes TNF-α

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T918 18-23 Protein denotes TNF-α
T919 35-51 Protein denotes TNF p55 receptor
T920 54-61 Protein denotes TNFp55R
T921 149-152 Protein denotes p65
T929 160-175 Phosphorylation denotes phosphorylation
T930 135-145 Negative_regulation denotes inhibition
T931 0-14 Negative_regulation denotes Neutralization
R649 T918 T931 themeOf TNF-α,Neutralization
R650 T921 T929 themeOf p65,phosphorylation
R652 T929 T930 themeOf phosphorylation,inhibition

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T762 149-152 Protein denotes p65
T761 54-61 Protein denotes TNFp55R
T760 35-51 Protein denotes TNF p55 receptor
T759 18-23 Protein denotes TNF-α
T773 135-145 Negative_regulation denotes inhibition
T772 160-175 Phosphorylation denotes phosphorylation
T771 0-14 Negative_regulation denotes Neutralization
R558 T759 T771 themeOf TNF-α,Neutralization
R559 T762 T772 themeOf p65,phosphorylation
R565 T772 T773 themeOf phosphorylation,inhibition

DLUT931

Id Subject Object Predicate Lexical cue
T817 135-145 Negative_regulation denotes inhibition
T816 160-175 Phosphorylation denotes phosphorylation
T801 18-23 Protein denotes TNF-α
T802 35-51 Protein denotes TNF p55 receptor
T803 54-61 Protein denotes TNFp55R
T804 149-152 Protein denotes p65
T814 0-14 Negative_regulation denotes Neutralization
T815 63-71 Positive_regulation denotes infusion
R566 T816 T817 themeOf phosphorylation,inhibition
R627 T801 T814 themeOf TNF-α,Neutralization
R628 T802 T815 themeOf TNF p55 receptor,infusion
R629 T804 T816 themeOf p65,phosphorylation

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T972 15-23 Protein denotes of TNF-α
T936 146-159 Entity denotes of p65-Thr435
T932 24-62 Protein denotes by soluble TNF p55 receptor (sTNFp55R)
T947 83-85 Entity denotes SE
T948 146-159 Protein denotes of p65-Thr435
T952 63-71 Entity denotes infusion
T960 179-196 Entity denotes endothelial cells

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T700 196-197 . denotes .
T699 191-196 NNS denotes cells
T698 179-190 JJ denotes endothelial
T697 176-178 IN denotes in
T696 160-175 NN denotes phosphorylation
T695 149-159 NN denotes p65-Thr435
T694 146-148 IN denotes of
T693 135-145 NN denotes inhibition
T692 131-134 IN denotes via
T691 123-130 NNS denotes damages
T690 114-122 JJ denotes neuronal
T689 110-113 CC denotes and
T688 104-109 NN denotes edema
T687 94-103 JJ denotes vasogenic
T686 83-93 JJ denotes SE-induced
T685 72-82 VBD denotes attenuated
T684 63-71 NN denotes infusion
T683 61-62 -RRB- denotes )
T682 53-61 JJ denotes sTNFp55R
T681 52-53 -LRB- denotes (
T680 43-51 NN denotes receptor
T679 39-42 NN denotes p55
T678 35-38 NNP denotes TNF
T677 27-34 JJ denotes soluble
T676 24-26 IN denotes by
T675 18-23 JJ denotes TNF-α
T674 15-17 IN denotes of
T673 0-14 NN denotes Neutralization
R479 T673 T685 nsubj Neutralization,attenuated
R480 T674 T673 prep of,Neutralization
R481 T675 T674 pobj TNF-α,of
R482 T676 T673 prep by,Neutralization
R483 T677 T680 amod soluble,receptor
R484 T678 T680 nmod TNF,receptor
R485 T679 T680 compound p55,receptor
R486 T680 T684 nmod receptor,infusion
R487 T681 T682 punct (,sTNFp55R
R488 T682 T680 appos sTNFp55R,receptor
R489 T683 T680 punct ),receptor
R490 T684 T676 pobj infusion,by
R491 T685 T685 ROOT attenuated,attenuated
R492 T686 T688 nmod SE-induced,edema
R493 T687 T688 amod vasogenic,edema
R494 T688 T685 dobj edema,attenuated
R495 T689 T688 cc and,edema
R496 T690 T691 amod neuronal,damages
R497 T691 T688 conj damages,edema
R498 T692 T685 prep via,attenuated
R499 T693 T692 pobj inhibition,via
R500 T694 T693 prep of,inhibition
R501 T695 T696 compound p65-Thr435,phosphorylation
R502 T696 T694 pobj phosphorylation,of
R503 T697 T696 prep in,phosphorylation
R504 T698 T699 amod endothelial,cells
R505 T699 T697 pobj cells,in
R506 T700 T685 punct .,attenuated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T869 135-145 Negative_regulation denotes inhibition
T868 135-145 Negative_regulation denotes inhibition
T867 160-175 Phosphorylation denotes phosphorylation
T866 160-175 Phosphorylation denotes phosphorylation
T865 0-14 Negative_regulation denotes Neutralization
T864 153-159 Protein denotes Thr435
T863 149-152 Protein denotes p65
T862 53-61 Protein denotes sTNFp55R
T861 35-51 Protein denotes TNF p55 receptor
T860 18-23 Protein denotes TNF-α
R576 T866 T868 themeOf phosphorylation,inhibition
R577 T867 T869 themeOf phosphorylation,inhibition
R578 T868 T865 Cause inhibition,Neutralization
R579 T869 T865 Cause inhibition,Neutralization
R573 T860 T865 themeOf TNF-α,Neutralization
R574 T863 T866 themeOf p65,phosphorylation
R575 T864 T867 themeOf Thr435,phosphorylation

testone

Id Subject Object Predicate Lexical cue
T26 18-23 Protein denotes TNF-α
T27 35-51 Protein denotes TNF p55 receptor
T28 54-61 Protein denotes TNFp55R
T29 149-152 Protein denotes p65
T44 0-14 Negative_regulation denotes Neutralization
T45 135-145 Negative_regulation denotes inhibition
T46 160-175 Phosphorylation denotes phosphorylation
R6 T26 T44 themeOf TNF-α,Neutralization
R7 T27 T44 causeOf TNF p55 receptor,Neutralization
R8 T29 T46 themeOf p65,phosphorylation
R14 T46 T45 themeOf phosphorylation,inhibition

test3

Id Subject Object Predicate Lexical cue
T88 160-175 Phosphorylation denotes phosphorylation
T87 149-152 Protein denotes p65
T86 135-145 Negative_regulation denotes inhibition
T85 53-61 Protein denotes sTNFp55R
T84 35-51 Protein denotes TNF p55 receptor
T83 18-23 Protein denotes TNF-α
T82 0-14 Negative_regulation denotes Neutralization
T58 18-23 Protein denotes TNF-α
T59 35-51 Protein denotes TNF p55 receptor
T60 54-61 Protein denotes TNFp55R
T61 149-152 Protein denotes p65
R27 T84 T82 causeOf TNF p55 receptor,Neutralization
R28 T85 T84 equivalentTo sTNFp55R,TNF p55 receptor
R29 T87 T88 themeOf p65,phosphorylation
R30 T88 T86 themeOf phosphorylation,inhibition
R26 T83 T82 themeOf TNF-α,Neutralization