PMC:3312845 / 1213-1474
Annnotations
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T414 | 246-254 | NN | denotes | sTNFp55R |
| T413 | 244-245 | -COMMA- | denotes | , |
| T412 | 233-244 | RB | denotes | Furthermore |
| T411 | 226-231 | NN | denotes | cells |
| T410 | 214-225 | JJ | denotes | endothelial |
| T409 | 211-213 | IN | denotes | in |
| T408 | 195-210 | NN | denotes | phosphorylation |
| T407 | 184-194 | NN | denotes | p65-Thr435 |
| T406 | 181-183 | IN | denotes | of |
| T405 | 170-180 | NN | denotes | inhibition |
| T404 | 166-169 | IN | denotes | via |
| T403 | 158-165 | NN | denotes | damages |
| T402 | 149-157 | JJ | denotes | neuronal |
| T401 | 145-148 | CC | denotes | and |
| T400 | 139-144 | NN | denotes | edema |
| T399 | 129-138 | JJ | denotes | vasogenic |
| T398 | 118-128 | JJ | denotes | SE-induced |
| T397 | 107-117 | VB | denotes | attenuated |
| T396 | 98-106 | NN | denotes | infusion |
| T395 | 96-97 | -RRB- | denotes | ) |
| T394 | 88-96 | NN | denotes | sTNFp55R |
| T393 | 87-88 | -LRB- | denotes | ( |
| T392 | 78-86 | NN | denotes | receptor |
| T391 | 74-77 | NN | denotes | p55 |
| T390 | 70-73 | NN | denotes | TNF |
| T389 | 62-69 | JJ | denotes | soluble |
| T388 | 59-61 | IN | denotes | by |
| T387 | 53-58 | NN | denotes | TNF-α |
| T386 | 50-52 | IN | denotes | of |
| T385 | 35-49 | NN | denotes | Neutralization |
| T384 | 32-33 | -RRB- | denotes | ) |
| T383 | 25-32 | NN | denotes | antigen |
| T382 | 17-24 | NN | denotes | barrier |
| T381 | 5-16 | JJ | denotes | endothelial |
| T380 | 2-4 | DT | denotes | an |
| T379 | 1-2 | -LRB- | denotes | ( |
| R210 | T383 | T379 | arg2Of | antigen,( |
| R211 | T383 | T380 | arg1Of | antigen,an |
| R212 | T383 | T381 | arg1Of | antigen,endothelial |
| R213 | T383 | T382 | arg1Of | antigen,barrier |
| R214 | T384 | T379 | arg3Of | ),( |
| R215 | T385 | T386 | arg1Of | Neutralization,of |
| R216 | T385 | T388 | arg1Of | Neutralization,by |
| R217 | T385 | T397 | arg1Of | Neutralization,attenuated |
| R218 | T387 | T386 | arg2Of | TNF-α,of |
| R219 | T392 | T389 | arg1Of | receptor,soluble |
| R220 | T392 | T390 | arg1Of | receptor,TNF |
| R221 | T392 | T391 | arg1Of | receptor,p55 |
| R222 | T392 | T393 | arg1Of | receptor,( |
| R223 | T394 | T393 | arg2Of | sTNFp55R,( |
| R224 | T395 | T393 | arg3Of | ),( |
| R225 | T396 | T388 | arg2Of | infusion,by |
| R226 | T396 | T392 | arg1Of | infusion,receptor |
| R227 | T397 | T404 | arg1Of | attenuated,via |
| R228 | T399 | T400 | arg1Of | vasogenic,edema |
| R229 | T399 | T401 | arg1Of | vasogenic,and |
| R230 | T402 | T401 | arg2Of | neuronal,and |
| R231 | T403 | T397 | arg2Of | damages,attenuated |
| R232 | T403 | T398 | arg1Of | damages,SE-induced |
| R233 | T403 | T399 | arg1Of | damages,vasogenic |
| R234 | T403 | T402 | arg1Of | damages,neuronal |
| R235 | T405 | T404 | arg2Of | inhibition,via |
| R236 | T405 | T406 | arg1Of | inhibition,of |
| R237 | T408 | T406 | arg2Of | phosphorylation,of |
| R238 | T408 | T407 | arg1Of | phosphorylation,p65-Thr435 |
| R239 | T408 | T409 | arg1Of | phosphorylation,in |
| R240 | T411 | T409 | arg2Of | cells,in |
| R241 | T411 | T410 | arg1Of | cells,endothelial |
bionlp-st-ge-2016-test-proteins
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T154 | 53-58 | Protein | denotes | TNF-α |
| T155 | 70-86 | Protein | denotes | TNF p55 receptor |
| T156 | 89-96 | Protein | denotes | TNFp55R |
| T157 | 184-187 | Protein | denotes | p65 |
| T158 | 247-254 | Protein | denotes | TNFp55R |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T479 | 74-77 | http://www.uniprot.org/uniprot/P01589 | denotes | p55 |
| T476 | 53-58 | http://www.uniprot.org/uniprot/P01375 | denotes | TNF-α |
| T460 | 184-187 | http://www.uniprot.org/uniprot/Q04206 | denotes | p65 |
| T464 | 184-187 | http://www.uniprot.org/uniprot/P21579 | denotes | p65 |
| T471 | 53-56 | http://www.uniprot.org/uniprot/P01375 | denotes | TNF |
| T472 | 70-73 | http://www.uniprot.org/uniprot/P01375 | denotes | TNF |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T171 | 195-210 | http://purl.obolibrary.org/obo/GO_0016310 | denotes | phosphorylation |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T183 | 226-231 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T113 | 35-232 | Sentence | denotes | Neutralization of TNF-α by soluble TNF p55 receptor (sTNFp55R) infusion attenuated SE-induced vasogenic edema and neuronal damages via inhibition of p65-Thr435 phosphorylation in endothelial cells. |
| T13 | 35-232 | Sentence | denotes | Neutralization of TNF-α by soluble TNF p55 receptor (sTNFp55R) infusion attenuated SE-induced vasogenic edema and neuronal damages via inhibition of p65-Thr435 phosphorylation in endothelial cells. |
simple1
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T198 | 247-254 | Protein | denotes | TNFp55R |
| T197 | 184-187 | Protein | denotes | p65 |
| T196 | 89-96 | Protein | denotes | TNFp55R |
| T195 | 70-86 | Protein | denotes | TNF p55 receptor |
| T194 | 53-58 | Protein | denotes | TNF-α |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T918 | 53-58 | Protein | denotes | TNF-α |
| T919 | 70-86 | Protein | denotes | TNF p55 receptor |
| T920 | 89-96 | Protein | denotes | TNFp55R |
| T921 | 184-187 | Protein | denotes | p65 |
| T922 | 247-254 | Protein | denotes | TNFp55R |
| T929 | 195-210 | Phosphorylation | denotes | phosphorylation |
| T930 | 170-180 | Negative_regulation | denotes | inhibition |
| T931 | 35-49 | Negative_regulation | denotes | Neutralization |
| R649 | T918 | T931 | themeOf | TNF-α,Neutralization |
| R650 | T921 | T929 | themeOf | p65,phosphorylation |
| R652 | T929 | T930 | themeOf | phosphorylation,inhibition |
BioNLP16_Messiy
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T763 | 247-254 | Protein | denotes | TNFp55R |
| T762 | 184-187 | Protein | denotes | p65 |
| T761 | 89-96 | Protein | denotes | TNFp55R |
| T760 | 70-86 | Protein | denotes | TNF p55 receptor |
| T759 | 53-58 | Protein | denotes | TNF-α |
| T773 | 170-180 | Negative_regulation | denotes | inhibition |
| T772 | 195-210 | Phosphorylation | denotes | phosphorylation |
| T771 | 35-49 | Negative_regulation | denotes | Neutralization |
| R558 | T759 | T771 | themeOf | TNF-α,Neutralization |
| R559 | T762 | T772 | themeOf | p65,phosphorylation |
| R565 | T772 | T773 | themeOf | phosphorylation,inhibition |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T817 | 170-180 | Negative_regulation | denotes | inhibition |
| T816 | 195-210 | Phosphorylation | denotes | phosphorylation |
| T801 | 53-58 | Protein | denotes | TNF-α |
| T802 | 70-86 | Protein | denotes | TNF p55 receptor |
| T803 | 89-96 | Protein | denotes | TNFp55R |
| T804 | 184-187 | Protein | denotes | p65 |
| T805 | 247-254 | Protein | denotes | TNFp55R |
| T814 | 35-49 | Negative_regulation | denotes | Neutralization |
| T815 | 98-106 | Positive_regulation | denotes | infusion |
| R566 | T816 | T817 | themeOf | phosphorylation,inhibition |
| R627 | T801 | T814 | themeOf | TNF-α,Neutralization |
| R628 | T802 | T815 | themeOf | TNF p55 receptor,infusion |
| R629 | T804 | T816 | themeOf | p65,phosphorylation |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T981 | 246-254 | Entity | denotes | sTNFp55R |
| T980 | 25-32 | Entity | denotes | antigen |
| T972 | 50-58 | Protein | denotes | of TNF-α |
| T936 | 181-194 | Entity | denotes | of p65-Thr435 |
| T932 | 59-97 | Protein | denotes | by soluble TNF p55 receptor (sTNFp55R) |
| T947 | 118-120 | Entity | denotes | SE |
| T948 | 181-194 | Protein | denotes | of p65-Thr435 |
| T952 | 98-106 | Entity | denotes | infusion |
| T953 | 246-254 | Protein | denotes | sTNFp55R |
| T960 | 214-231 | Entity | denotes | endothelial cells |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T703 | 246-254 | JJ | denotes | sTNFp55R |
| T702 | 244-245 | , | denotes | , |
| T701 | 233-244 | RB | denotes | Furthermore |
| T700 | 231-232 | . | denotes | . |
| T699 | 226-231 | NNS | denotes | cells |
| T698 | 214-225 | JJ | denotes | endothelial |
| T697 | 211-213 | IN | denotes | in |
| T696 | 195-210 | NN | denotes | phosphorylation |
| T695 | 184-194 | NN | denotes | p65-Thr435 |
| T694 | 181-183 | IN | denotes | of |
| T693 | 170-180 | NN | denotes | inhibition |
| T692 | 166-169 | IN | denotes | via |
| T691 | 158-165 | NNS | denotes | damages |
| T690 | 149-157 | JJ | denotes | neuronal |
| T689 | 145-148 | CC | denotes | and |
| T688 | 139-144 | NN | denotes | edema |
| T687 | 129-138 | JJ | denotes | vasogenic |
| T686 | 118-128 | JJ | denotes | SE-induced |
| T685 | 107-117 | VBD | denotes | attenuated |
| T684 | 98-106 | NN | denotes | infusion |
| T683 | 96-97 | -RRB- | denotes | ) |
| T682 | 88-96 | JJ | denotes | sTNFp55R |
| T681 | 87-88 | -LRB- | denotes | ( |
| T680 | 78-86 | NN | denotes | receptor |
| T679 | 74-77 | NN | denotes | p55 |
| T678 | 70-73 | NNP | denotes | TNF |
| T677 | 62-69 | JJ | denotes | soluble |
| T676 | 59-61 | IN | denotes | by |
| T675 | 53-58 | JJ | denotes | TNF-α |
| T674 | 50-52 | IN | denotes | of |
| T673 | 35-49 | NN | denotes | Neutralization |
| T672 | 33-34 | . | denotes | . |
| T671 | 32-33 | -RRB- | denotes | ) |
| T670 | 25-32 | NN | denotes | antigen |
| T669 | 17-24 | NN | denotes | barrier |
| T668 | 5-16 | JJ | denotes | endothelial |
| T667 | 2-4 | DT | denotes | an |
| T666 | 1-2 | -LRB- | denotes | ( |
| R473 | T667 | T670 | det | an,antigen |
| R474 | T668 | T670 | amod | endothelial,antigen |
| R475 | T669 | T670 | compound | barrier,antigen |
| R479 | T673 | T685 | nsubj | Neutralization,attenuated |
| R480 | T674 | T673 | prep | of,Neutralization |
| R481 | T675 | T674 | pobj | TNF-α,of |
| R482 | T676 | T673 | prep | by,Neutralization |
| R483 | T677 | T680 | amod | soluble,receptor |
| R484 | T678 | T680 | nmod | TNF,receptor |
| R485 | T679 | T680 | compound | p55,receptor |
| R486 | T680 | T684 | nmod | receptor,infusion |
| R487 | T681 | T682 | punct | (,sTNFp55R |
| R488 | T682 | T680 | appos | sTNFp55R,receptor |
| R489 | T683 | T680 | punct | ),receptor |
| R490 | T684 | T676 | pobj | infusion,by |
| R491 | T685 | T685 | ROOT | attenuated,attenuated |
| R492 | T686 | T688 | nmod | SE-induced,edema |
| R493 | T687 | T688 | amod | vasogenic,edema |
| R494 | T688 | T685 | dobj | edema,attenuated |
| R495 | T689 | T688 | cc | and,edema |
| R496 | T690 | T691 | amod | neuronal,damages |
| R497 | T691 | T688 | conj | damages,edema |
| R498 | T692 | T685 | prep | via,attenuated |
| R499 | T693 | T692 | pobj | inhibition,via |
| R500 | T694 | T693 | prep | of,inhibition |
| R501 | T695 | T696 | compound | p65-Thr435,phosphorylation |
| R502 | T696 | T694 | pobj | phosphorylation,of |
| R503 | T697 | T696 | prep | in,phosphorylation |
| R504 | T698 | T699 | amod | endothelial,cells |
| R505 | T699 | T697 | pobj | cells,in |
| R506 | T700 | T685 | punct | .,attenuated |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T870 | 246-254 | Protein | denotes | sTNFp55R |
| T869 | 170-180 | Negative_regulation | denotes | inhibition |
| T868 | 170-180 | Negative_regulation | denotes | inhibition |
| T867 | 195-210 | Phosphorylation | denotes | phosphorylation |
| T866 | 195-210 | Phosphorylation | denotes | phosphorylation |
| T865 | 35-49 | Negative_regulation | denotes | Neutralization |
| T864 | 188-194 | Protein | denotes | Thr435 |
| T863 | 184-187 | Protein | denotes | p65 |
| T862 | 88-96 | Protein | denotes | sTNFp55R |
| T861 | 70-86 | Protein | denotes | TNF p55 receptor |
| T860 | 53-58 | Protein | denotes | TNF-α |
| R576 | T866 | T868 | themeOf | phosphorylation,inhibition |
| R577 | T867 | T869 | themeOf | phosphorylation,inhibition |
| R578 | T868 | T865 | Cause | inhibition,Neutralization |
| R579 | T869 | T865 | Cause | inhibition,Neutralization |
| R573 | T860 | T865 | themeOf | TNF-α,Neutralization |
| R574 | T863 | T866 | themeOf | p65,phosphorylation |
| R575 | T864 | T867 | themeOf | Thr435,phosphorylation |
testone
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T26 | 53-58 | Protein | denotes | TNF-α |
| T27 | 70-86 | Protein | denotes | TNF p55 receptor |
| T28 | 89-96 | Protein | denotes | TNFp55R |
| T29 | 184-187 | Protein | denotes | p65 |
| T30 | 247-254 | Protein | denotes | TNFp55R |
| T44 | 35-49 | Negative_regulation | denotes | Neutralization |
| T45 | 170-180 | Negative_regulation | denotes | inhibition |
| T46 | 195-210 | Phosphorylation | denotes | phosphorylation |
| R6 | T26 | T44 | themeOf | TNF-α,Neutralization |
| R7 | T27 | T44 | causeOf | TNF p55 receptor,Neutralization |
| R8 | T29 | T46 | themeOf | p65,phosphorylation |
| R14 | T46 | T45 | themeOf | phosphorylation,inhibition |
test3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T89 | 246-254 | Protein | denotes | sTNFp55R |
| T88 | 195-210 | Phosphorylation | denotes | phosphorylation |
| T87 | 184-187 | Protein | denotes | p65 |
| T86 | 170-180 | Negative_regulation | denotes | inhibition |
| T85 | 88-96 | Protein | denotes | sTNFp55R |
| T84 | 70-86 | Protein | denotes | TNF p55 receptor |
| T83 | 53-58 | Protein | denotes | TNF-α |
| T82 | 35-49 | Negative_regulation | denotes | Neutralization |
| T58 | 53-58 | Protein | denotes | TNF-α |
| T59 | 70-86 | Protein | denotes | TNF p55 receptor |
| T60 | 89-96 | Protein | denotes | TNFp55R |
| T61 | 184-187 | Protein | denotes | p65 |
| T62 | 247-254 | Protein | denotes | TNFp55R |
| R27 | T84 | T82 | causeOf | TNF p55 receptor,Neutralization |
| R28 | T85 | T84 | equivalentTo | sTNFp55R,TNF p55 receptor |
| R29 | T87 | T88 | themeOf | p65,phosphorylation |
| R30 | T88 | T86 | themeOf | phosphorylation,inhibition |
| R26 | T83 | T82 | themeOf | TNF-α,Neutralization |