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PMC:3312845 / 11631-13094 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5496 1454-1462 NN denotes software
T5495 1450-1453 CD denotes 4.8
T5494 1445-1449 NNP denotes Rel.
T5493 1434-1444 NNP denotes AxioVision
T5492 1430-1433 CC denotes and
T5491 1419-1429 NN denotes microscope
T5490 1416-1418 NN denotes M2
T5489 1406-1415 NN denotes AxioImage
T5488 1403-1405 DT denotes an
T5487 1397-1402 VB denotes using
T5486 1388-1396 VB denotes captured
T5485 1383-1387 VB denotes were
T5484 1376-1382 NN denotes images
T5483 1372-1375 DT denotes All
T5482 1369-1370 -RRB- denotes )
T5481 1367-1369 NNP denotes CA
T5480 1365-1366 -COMMA- denotes ,
T5479 1355-1365 NNP denotes Burlingame
T5478 1353-1354 -COMMA- denotes ,
T5477 1347-1353 NNP denotes Vector
T5476 1346-1347 -LRB- denotes (
T5475 1341-1345 NN denotes DAPI
T5474 1336-1340 IN denotes with
T5473 1329-1335 NN denotes medium
T5472 1320-1328 VB denotes mounting
T5471 1308-1319 NNP denotes Vectashield
T5470 1303-1307 VB denotes used
T5469 1300-1302 PRP denotes we
T5468 1298-1299 -COMMA- denotes ,
T5467 1283-1298 NN denotes counterstaining
T5466 1276-1282 NN denotes nuclei
T5465 1272-1275 IN denotes For
T5464 1264-1270 NN denotes slides
T5463 1249-1263 JJ denotes gelatin-coated
T5462 1246-1248 IN denotes on
T5461 1238-1245 VB denotes mounted
T5460 1234-1237 CC denotes and
T5459 1232-1233 -COMMA- denotes ,
T5458 1229-1232 NNP denotes PBS
T5457 1224-1228 IN denotes with
T5456 1220-1223 NN denotes min
T5455 1217-1219 CD denotes 10
T5454 1213-1216 IN denotes for
T5453 1207-1212 NN denotes times
T5452 1201-1206 CD denotes three
T5451 1194-1200 VB denotes washed
T5450 1189-1193 VB denotes were
T5449 1180-1188 NN denotes sections
T5448 1176-1179 DT denotes The
T5447 1163-1174 NN denotes temperature
T5446 1158-1162 NN denotes room
T5445 1155-1157 IN denotes at
T5444 1152-1154 NN denotes hr
T5443 1150-1151 CD denotes 2
T5442 1146-1149 IN denotes for
T5441 1144-1145 -COMMA- denotes ,
T5440 1141-1144 CD denotes 200
T5439 1140-1141 -COLON- denotes :
T5438 1139-1140 CD denotes 1
T5437 1131-1138 VB denotes diluted
T5436 1129-1130 -COMMA- denotes ,
T5435 1128-1129 -RRB- denotes )
T5434 1126-1128 NNP denotes CA
T5433 1124-1125 -COMMA- denotes ,
T5432 1115-1124 NNP denotes Francisco
T5431 1111-1114 NNP denotes San
T5430 1109-1110 -COMMA- denotes ,
T5429 1101-1109 NNP denotes Amersham
T5428 1100-1101 -LRB- denotes (
T5427 1091-1099 NN denotes antisera
T5426 1081-1090 JJ denotes secondary
T5425 1066-1080 JJ denotes Cy3-conjugated
T5424 1062-1065 CC denotes and
T5423 1056-1061 NN denotes FITC-
T5422 1053-1055 IN denotes of
T5421 1045-1052 NN denotes mixture
T5420 1043-1044 DT denotes a
T5419 1040-1042 IN denotes in
T5418 1030-1039 VB denotes incubated
T5417 1025-1029 RB denotes also
T5416 1020-1024 VB denotes were
T5415 1011-1019 NN denotes sections
T5414 1009-1010 -COMMA- denotes ,
T5413 1006-1009 NNP denotes PBS
T5412 1001-1005 IN denotes with
T5411 993-1000 NN denotes minutes
T5410 990-992 CD denotes 10
T5409 986-989 IN denotes for
T5408 980-985 NN denotes times
T5407 974-979 CD denotes three
T5406 966-973 VB denotes washing
T5405 960-965 IN denotes After
T5404 111-122 NN denotes temperature
T5403 106-110 NN denotes room
T5402 103-105 IN denotes at
T5401 99-102 NN denotes min
T5400 96-98 CD denotes 30
T5399 92-95 IN denotes for
T5398 88-91 NNP denotes PBS
T5397 85-87 IN denotes in
T5396 77-84 NN denotes albumin
T5395 71-76 NN denotes serum
T5394 64-70 JJ denotes bovine
T5393 62-63 NN denotes %
T5392 61-62 CD denotes 3
T5391 56-60 IN denotes with
T5390 46-55 VB denotes incubated
T5389 41-45 VB denotes were
T5388 32-40 NN denotes Sections
T5387 26-31 NN denotes study
T5386 7-25 NN denotes immunofluorescence
T5385 0-6 JJ denotes Double
R4343 T5387 T5385 arg1Of study,Double
R4344 T5387 T5386 arg1Of study,immunofluorescence
R4345 T5388 T5389 arg1Of Sections,were
R4346 T5388 T5390 arg2Of Sections,incubated
R4347 T5390 T5389 arg2Of incubated,were
R4348 T5390 T5391 arg1Of incubated,with
R4349 T5390 T5399 arg1Of incubated,for
R4350 T5392 T5393 arg1Of 3,%
R4351 T5396 T5391 arg2Of albumin,with
R4352 T5396 T5392 arg1Of albumin,3
R4353 T5396 T5394 arg1Of albumin,bovine
R4354 T5396 T5395 arg1Of albumin,serum
R4355 T5396 T5397 arg1Of albumin,in
R4356 T5398 T5397 arg2Of PBS,in
R4357 T5401 T5399 arg2Of min,for
R4358 T5401 T5400 arg1Of min,30
R4359 T5401 T5402 arg1Of min,at
R4360 T5404 T5402 arg2Of temperature,at
R4361 T5404 T5403 arg1Of temperature,room
R4362 T5406 T5405 arg2Of washing,After
R4363 T5406 T5409 arg1Of washing,for
R4364 T5408 T5406 arg2Of times,washing
R4365 T5408 T5407 arg1Of times,three
R4366 T5411 T5409 arg2Of minutes,for
R4367 T5411 T5410 arg1Of minutes,10
R4368 T5411 T5412 arg1Of minutes,with
R4369 T5413 T5412 arg2Of PBS,with
R4370 T5415 T5406 arg1Of sections,washing
R4371 T5415 T5416 arg1Of sections,were
R4372 T5415 T5418 arg2Of sections,incubated
R4373 T5418 T5405 arg1Of incubated,After
R4374 T5418 T5414 arg1Of incubated,","
R4375 T5418 T5416 arg2Of incubated,were
R4376 T5418 T5417 arg1Of incubated,also
R4377 T5418 T5419 arg1Of incubated,in
R4378 T5418 T5437 arg2Of incubated,diluted
R4379 T5421 T5419 arg2Of mixture,in
R4380 T5421 T5420 arg1Of mixture,a
R4381 T5421 T5422 arg1Of mixture,of
R4382 T5423 T5424 arg1Of FITC-,and
R4383 T5425 T5424 arg2Of Cy3-conjugated,and
R4384 T5427 T5422 arg2Of antisera,of
R4385 T5427 T5423 arg1Of antisera,FITC-
R4386 T5427 T5425 arg1Of antisera,Cy3-conjugated
R4387 T5427 T5426 arg1Of antisera,secondary
R4388 T5427 T5428 arg1Of antisera,(
R4389 T5429 T5428 arg2Of Amersham,(
R4390 T5429 T5430 arg1Of Amersham,","
R4391 T5432 T5430 arg2Of Francisco,","
R4392 T5432 T5431 arg1Of Francisco,San
R4393 T5432 T5433 arg1Of Francisco,","
R4394 T5434 T5433 arg2Of CA,","
R4395 T5435 T5428 arg3Of ),(
R4396 T5437 T5436 arg1Of diluted,","
R4397 T5438 T5437 arg1Of 1,diluted
R4398 T5438 T5439 arg1Of 1,:
R4399 T5440 T5439 arg2Of 200,:
R4400 T5440 T5441 arg1Of 200,","
R4401 T5440 T5442 arg1Of 200,for
R4402 T5444 T5442 arg2Of hr,for
R4403 T5444 T5443 arg1Of hr,2
R4404 T5444 T5445 arg1Of hr,at
R4405 T5447 T5445 arg2Of temperature,at
R4406 T5447 T5446 arg1Of temperature,room
R4407 T5449 T5448 arg1Of sections,The
R4408 T5449 T5450 arg1Of sections,were
R4409 T5449 T5451 arg2Of sections,washed
R4410 T5449 T5461 arg1Of sections,mounted
R4411 T5451 T5450 arg2Of washed,were
R4412 T5451 T5453 arg1Of washed,times
R4413 T5451 T5454 arg1Of washed,for
R4414 T5451 T5460 arg1Of washed,and
R4415 T5453 T5452 arg1Of times,three
R4416 T5456 T5454 arg2Of min,for
R4417 T5456 T5455 arg1Of min,10
R4418 T5456 T5457 arg1Of min,with
R4419 T5458 T5457 arg2Of PBS,with
R4420 T5460 T5459 arg1Of and,","
R4421 T5461 T5460 arg2Of mounted,and
R4422 T5461 T5462 arg1Of mounted,on
R4423 T5464 T5462 arg2Of slides,on
R4424 T5464 T5463 arg1Of slides,gelatin-coated
R4425 T5467 T5465 arg2Of counterstaining,For
R4426 T5467 T5466 arg1Of counterstaining,nuclei
R4427 T5469 T5470 arg1Of we,used
R4428 T5470 T5465 arg1Of used,For
R4429 T5470 T5468 arg1Of used,","
R4430 T5470 T5474 arg1Of used,with
R4431 T5470 T5476 arg1Of used,(
R4432 T5473 T5470 arg2Of medium,used
R4433 T5473 T5471 arg1Of medium,Vectashield
R4434 T5473 T5472 arg1Of medium,mounting
R4435 T5475 T5474 arg2Of DAPI,with
R4436 T5477 T5478 arg1Of Vector,","
R4437 T5478 T5476 arg2Of ",",(
R4438 T5478 T5480 arg1Of ",",","
R4439 T5479 T5478 arg2Of Burlingame,","
R4440 T5481 T5480 arg2Of CA,","
R4441 T5482 T5476 arg3Of ),(
R4442 T5484 T5483 arg1Of images,All
R4443 T5484 T5485 arg1Of images,were
R4444 T5484 T5486 arg2Of images,captured
R4445 T5486 T5485 arg2Of captured,were
R4446 T5486 T5487 modOf captured,using
R4447 T5491 T5488 arg1Of microscope,an
R4448 T5491 T5489 arg1Of microscope,AxioImage
R4449 T5491 T5490 arg1Of microscope,M2
R4450 T5491 T5492 arg1Of microscope,and
R4451 T5492 T5487 arg2Of and,using
R4452 T5494 T5493 arg1Of Rel.,AxioVision
R4453 T5494 T5495 arg1Of Rel.,4.8
R4454 T5496 T5492 arg2Of software,and
R4455 T5496 T5494 arg1Of software,Rel.

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T5377 71-84 Protein denotes serum albumin

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T5508 875-880 http://www.uniprot.org/uniprot/P10889 denotes MIP-2
T5507 742-745 http://www.uniprot.org/uniprot/P21579 denotes p65
T5506 661-664 http://www.uniprot.org/uniprot/P21579 denotes p65
T5505 645-648 http://www.uniprot.org/uniprot/P21579 denotes p65
T5504 633-636 http://www.uniprot.org/uniprot/P21579 denotes p65
T5503 621-624 http://www.uniprot.org/uniprot/P21579 denotes p65
T5502 742-745 http://www.uniprot.org/uniprot/Q04206 denotes p65
T5501 661-664 http://www.uniprot.org/uniprot/Q04206 denotes p65
T5500 645-648 http://www.uniprot.org/uniprot/Q04206 denotes p65
T5499 633-636 http://www.uniprot.org/uniprot/Q04206 denotes p65
T5498 621-624 http://www.uniprot.org/uniprot/Q04206 denotes p65
T5497 179-184 http://www.uniprot.org/uniprot/P01375 denotes TNF-α

UBERON-AE

Id Subject Object Predicate Lexical cue
T5368 71-76 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum

GO-BP

Id Subject Object Predicate Lexical cue
T5380 1367-1369 http://purl.obolibrary.org/obo/GO_0033968 denotes CA
T5379 1126-1128 http://purl.obolibrary.org/obo/GO_0033968 denotes CA
T5378 553-555 http://purl.obolibrary.org/obo/GO_0033968 denotes CA

GO-MF

Id Subject Object Predicate Lexical cue
T5383 1367-1369 http://purl.obolibrary.org/obo/GO_0033968 denotes CA
T5382 1126-1128 http://purl.obolibrary.org/obo/GO_0033968 denotes CA
T5381 553-555 http://purl.obolibrary.org/obo/GO_0033968 denotes CA

sentences

Id Subject Object Predicate Lexical cue
T5372 960-1175 Sentence denotes After washing three times for 10 minutes with PBS, sections were also incubated in a mixture of FITC- and Cy3-conjugated secondary antisera (Amersham, San Francisco, CA), diluted 1:200, for 2 hr at room temperature.
T5371 124-959 Sentence denotes Sections were then incubated in a mixture of goat anti-TNF-α IgG (1:1000, R&D systems, Minneapolis, MN)/mouse anti-OX-42 IgG (1:100, Serotec, Cambridge, UK), mouse anti-GFAP IgG (1:1000, an astroglial marker, Millipore Corporation, Billerica, MA)/rabbit anti-TNFp55R IgG (1:1000, Abcam, Cambridge, UK), mouse anti-GFAP IgG/rabbit anti-TNFp75R IgG (1:1000, Abcam, Cambridge, UK), mouse anti-SMI-71 IgM (1:1000, Covance, Berkeley, CA)/rabbit anti-TNFp75R IgG, mouse anti-GFAP IgG/rabbit anti-NF-κB (p65-Ser276, p65-Ser311, p65-Ser529, and p65-Thr435) IgG (1:100, Abcam, Cambridge, UK), mouse anti-SMI-71 IgM/rabbit anti-p65-Thr435 NF-κB IgG, mouse anti-SMI-71 IgM/rabbit anti-GLUT-1 IgG (1:100, Abcam, Cambridge, UK), or mouse anti-GFAP IgG/rabbit anti-MIP-2 IgG (1:100) in PBS containing 0.3% triton X-100 overnight at room temperature.
T5370 32-123 Sentence denotes Sections were incubated with 3% bovine serum albumin in PBS for 30 min at room temperature.
T5369 0-31 Sentence denotes Double immunofluorescence study
T5375 1372-1463 Sentence denotes All images were captured using an AxioImage M2 microscope and AxioVision Rel. 4.8 software.
T5374 1272-1371 Sentence denotes For nuclei counterstaining, we used Vectashield mounting medium with DAPI (Vector, Burlingame, CA).
T5373 1176-1271 Sentence denotes The sections were washed three times for 10 min with PBS, and mounted on gelatin-coated slides.
T91 0-31 Sentence denotes Double immunofluorescence study
T92 32-123 Sentence denotes Sections were incubated with 3% bovine serum albumin in PBS for 30 min at room temperature.
T93 124-959 Sentence denotes Sections were then incubated in a mixture of goat anti-TNF-α IgG (1:1000, R&D systems, Minneapolis, MN)/mouse anti-OX-42 IgG (1:100, Serotec, Cambridge, UK), mouse anti-GFAP IgG (1:1000, an astroglial marker, Millipore Corporation, Billerica, MA)/rabbit anti-TNFp55R IgG (1:1000, Abcam, Cambridge, UK), mouse anti-GFAP IgG/rabbit anti-TNFp75R IgG (1:1000, Abcam, Cambridge, UK), mouse anti-SMI-71 IgM (1:1000, Covance, Berkeley, CA)/rabbit anti-TNFp75R IgG, mouse anti-GFAP IgG/rabbit anti-NF-κB (p65-Ser276, p65-Ser311, p65-Ser529, and p65-Thr435) IgG (1:100, Abcam, Cambridge, UK), mouse anti-SMI-71 IgM/rabbit anti-p65-Thr435 NF-κB IgG, mouse anti-SMI-71 IgM/rabbit anti-GLUT-1 IgG (1:100, Abcam, Cambridge, UK), or mouse anti-GFAP IgG/rabbit anti-MIP-2 IgG (1:100) in PBS containing 0.3% triton X-100 overnight at room temperature.
T94 960-1175 Sentence denotes After washing three times for 10 minutes with PBS, sections were also incubated in a mixture of FITC- and Cy3-conjugated secondary antisera (Amersham, San Francisco, CA), diluted 1:200, for 2 hr at room temperature.
T95 1176-1271 Sentence denotes The sections were washed three times for 10 min with PBS, and mounted on gelatin-coated slides.
T96 1272-1371 Sentence denotes For nuclei counterstaining, we used Vectashield mounting medium with DAPI (Vector, Burlingame, CA).
T97 1372-1449 Sentence denotes All images were captured using an AxioImage M2 microscope and AxioVision Rel.
T98 1450-1463 Sentence denotes 4.8 software.

simple1

Id Subject Object Predicate Lexical cue
T5384 71-84 Protein denotes serum albumin

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T5838 71-84 Protein denotes serum albumin

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T5793 71-84 Protein denotes serum albumin

DLUT931

Id Subject Object Predicate Lexical cue
T5794 71-84 Protein denotes serum albumin

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T5845 1043-1061 Entity denotes a mixture of FITC-
T5844 1056-1061 Entity denotes FITC-
T5843 1341-1345 Entity denotes DAPI
T5842 1434-1448 Protein denotes AxioVision Rel
T5841 1276-1298 Entity denotes nuclei counterstaining
T5840 61-98 Protein denotes 3% bovine serum albumin in PBS for 30
T5839 1416-1418 Entity denotes M2

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T5613 521-524 NNP denotes IgM
T5612 509-520 JJ denotes anti-SMI-71
T5611 503-508 NN denotes mouse
T5610 501-502 , denotes ,
T5609 500-501 -RRB- denotes )
T5608 498-500 NNP denotes UK
T5607 496-497 , denotes ,
T5606 487-496 NNP denotes Cambridge
T5605 485-486 , denotes ,
T5604 480-485 NNP denotes Abcam
T5603 478-479 , denotes ,
T5602 472-478 CD denotes 1:1000
T5601 471-472 -LRB- denotes (
T5600 467-470 NNP denotes IgG
T5599 454-466 NNP denotes anti-TNFp75R
T5598 443-453 NNP denotes IgG/rabbit
T5597 433-442 JJ denotes anti-GFAP
T5596 427-432 NN denotes mouse
T5595 425-426 , denotes ,
T5594 424-425 -RRB- denotes )
T5593 422-424 NNP denotes UK
T5592 420-421 , denotes ,
T5591 411-420 NNP denotes Cambridge
T5590 409-410 , denotes ,
T5589 404-409 NNP denotes Abcam
T5588 402-403 , denotes ,
T5587 396-402 CD denotes 1:1000
T5586 395-396 -LRB- denotes (
T5585 391-394 NNP denotes IgG
T5584 378-390 JJ denotes anti-TNFp55R
T5583 371-377 NN denotes rabbit
T5582 370-371 RB denotes /
T5581 369-370 -RRB- denotes )
T5580 367-369 NNP denotes MA
T5579 365-366 , denotes ,
T5578 356-365 NNP denotes Billerica
T5577 354-355 , denotes ,
T5576 343-354 NNP denotes Corporation
T5575 333-342 NNP denotes Millipore
T5574 331-332 , denotes ,
T5573 325-331 NN denotes marker
T5572 314-324 JJ denotes astroglial
T5571 311-313 DT denotes an
T5570 309-310 , denotes ,
T5569 303-309 CD denotes 1:1000
T5568 302-303 -LRB- denotes (
T5567 298-301 NNP denotes IgG
T5566 288-297 JJ denotes anti-GFAP
T5565 282-287 NN denotes mouse
T5564 280-281 , denotes ,
T5563 279-280 -RRB- denotes )
T5562 277-279 NNP denotes UK
T5561 275-276 , denotes ,
T5560 266-275 NNP denotes Cambridge
T5559 264-265 , denotes ,
T5558 257-264 NNP denotes Serotec
T5557 255-256 , denotes ,
T5556 250-255 CD denotes 1:100
T5555 249-250 -LRB- denotes (
T5554 245-248 NNP denotes IgG
T5553 234-244 JJ denotes anti-OX-42
T5552 228-233 NN denotes mouse
T5551 227-228 RB denotes /
T5550 226-227 -RRB- denotes )
T5549 224-226 NNP denotes MN
T5548 222-223 , denotes ,
T5547 211-222 NNP denotes Minneapolis
T5546 209-210 , denotes ,
T5545 202-209 NNS denotes systems
T5544 198-201 NNP denotes R&D
T5543 196-197 , denotes ,
T5542 190-196 CD denotes 1:1000
T5541 189-190 -LRB- denotes (
T5540 185-188 NNP denotes IgG
T5539 174-184 JJ denotes anti-TNF-α
T5538 169-173 NN denotes goat
T5537 166-168 IN denotes of
T5536 158-165 NN denotes mixture
T5535 156-157 DT denotes a
T5534 153-155 IN denotes in
T5533 143-152 VBN denotes incubated
T5532 138-142 RB denotes then
T5531 133-137 VBD denotes were
T5791 1462-1463 . denotes .
T5790 1454-1462 NN denotes software
T5789 1450-1453 CD denotes 4.8
T5788 1448-1449 . denotes .
T5787 1445-1448 NNP denotes Rel
T5786 1434-1444 NNP denotes AxioVision
T5785 1430-1433 CC denotes and
T5784 1419-1429 NN denotes microscope
T5783 1416-1418 NNP denotes M2
T5782 1406-1415 NNP denotes AxioImage
T5781 1403-1405 DT denotes an
T5780 1397-1402 VBG denotes using
T5779 1388-1396 VBN denotes captured
T5778 1383-1387 VBD denotes were
T5777 1376-1382 NNS denotes images
T5776 1372-1375 DT denotes All
T5775 1370-1371 . denotes .
T5774 1369-1370 -RRB- denotes )
T5773 1367-1369 NNP denotes CA
T5772 1365-1366 , denotes ,
T5771 1355-1365 NNP denotes Burlingame
T5770 1353-1354 , denotes ,
T5769 1347-1353 NNP denotes Vector
T5768 1346-1347 -LRB- denotes (
T5767 1341-1345 NNP denotes DAPI
T5766 1336-1340 IN denotes with
T5765 1329-1335 NN denotes medium
T5764 1320-1328 VBG denotes mounting
T5763 1308-1319 NNP denotes Vectashield
T5762 1303-1307 VBD denotes used
T5761 1300-1302 PRP denotes we
T5760 1298-1299 , denotes ,
T5759 1283-1298 NN denotes counterstaining
T5758 1276-1282 JJ denotes nuclei
T5757 1272-1275 IN denotes For
T5756 1270-1271 . denotes .
T5755 1264-1270 NNS denotes slides
T5754 1249-1263 JJ denotes gelatin-coated
T5753 1246-1248 IN denotes on
T5752 1238-1245 VBD denotes mounted
T5751 1234-1237 CC denotes and
T5750 1232-1233 , denotes ,
T5749 1229-1232 NNP denotes PBS
T5748 1224-1228 IN denotes with
T5747 1220-1223 NN denotes min
T5746 1217-1219 CD denotes 10
T5745 1213-1216 IN denotes for
T5744 1207-1212 NNS denotes times
T5743 1201-1206 CD denotes three
T5742 1194-1200 VBN denotes washed
T5741 1189-1193 VBD denotes were
T5740 1180-1188 NNS denotes sections
T5739 1176-1179 DT denotes The
T5738 1174-1175 . denotes .
T5737 1163-1174 NN denotes temperature
T5736 1158-1162 NN denotes room
T5735 1155-1157 IN denotes at
T5734 1152-1154 NN denotes hr
T5733 1150-1151 CD denotes 2
T5732 1146-1149 IN denotes for
T5731 1144-1145 , denotes ,
T5730 1139-1144 CD denotes 1:200
T5729 1131-1138 VBN denotes diluted
T5728 1129-1130 , denotes ,
T5727 1128-1129 -RRB- denotes )
T5726 1126-1128 NNP denotes CA
T5725 1124-1125 , denotes ,
T5724 1115-1124 NNP denotes Francisco
T5723 1111-1114 NNP denotes San
T5722 1109-1110 , denotes ,
T5721 1101-1109 NNP denotes Amersham
T5720 1100-1101 -LRB- denotes (
T5719 1091-1099 NN denotes antisera
T5718 1081-1090 JJ denotes secondary
T5717 1066-1080 JJ denotes Cy3-conjugated
T5716 1062-1065 CC denotes and
T5715 1060-1061 : denotes -
T5714 1056-1060 NNP denotes FITC
T5713 1053-1055 IN denotes of
T5712 1045-1052 NN denotes mixture
T5711 1043-1044 DT denotes a
T5710 1040-1042 IN denotes in
T5709 1030-1039 VBN denotes incubated
T5708 1025-1029 RB denotes also
T5707 1020-1024 VBD denotes were
T5706 1011-1019 NNS denotes sections
T5705 1009-1010 , denotes ,
T5704 1006-1009 NNP denotes PBS
T5703 1001-1005 IN denotes with
T5702 993-1000 NNS denotes minutes
T5701 990-992 CD denotes 10
T5700 986-989 IN denotes for
T5699 980-985 NNS denotes times
T5698 974-979 CD denotes three
T5697 966-973 VBG denotes washing
T5696 960-965 IN denotes After
T5695 958-959 . denotes .
T5694 947-958 NN denotes temperature
T5693 942-946 NN denotes room
T5692 939-941 IN denotes at
T5691 929-938 JJ denotes overnight
T5690 923-928 NN denotes X-100
T5689 916-922 NN denotes triton
T5688 914-915 NN denotes %
T5687 911-914 CD denotes 0.3
T5686 900-910 VBG denotes containing
T5685 896-899 NNP denotes PBS
T5684 893-895 IN denotes in
T5683 891-892 -RRB- denotes )
T5682 886-891 CD denotes 1:100
T5681 885-886 -LRB- denotes (
T5680 881-884 NNP denotes IgG
T5679 870-880 NNP denotes anti-MIP-2
T5678 859-869 NNP denotes IgG/rabbit
T5677 849-858 JJ denotes anti-GFAP
T5676 843-848 NN denotes mouse
T5675 840-842 CC denotes or
T5674 838-839 , denotes ,
T5673 837-838 -RRB- denotes )
T5672 835-837 NNP denotes UK
T5671 833-834 , denotes ,
T5670 824-833 NNP denotes Cambridge
T5669 822-823 , denotes ,
T5668 817-822 NNP denotes Abcam
T5667 815-816 , denotes ,
T5666 810-815 CD denotes 1:100
T5665 809-810 -LRB- denotes (
T5664 805-808 NNP denotes IgG
T5663 793-804 NNP denotes anti-GLUT-1
T5662 782-792 NNP denotes IgM/rabbit
T5661 770-781 JJ denotes anti-SMI-71
T5660 764-769 NN denotes mouse
T5659 762-763 , denotes ,
T5658 759-762 NNP denotes IgG
T5657 753-758 NNP denotes NF-κB
T5656 737-752 NNP denotes anti-p65-Thr435
T5655 726-736 NNP denotes IgM/rabbit
T5654 714-725 JJ denotes anti-SMI-71
T5653 708-713 NN denotes mouse
T5652 706-707 , denotes ,
T5651 705-706 -RRB- denotes )
T5650 703-705 NNP denotes UK
T5649 701-702 , denotes ,
T5648 692-701 NNP denotes Cambridge
T5647 690-691 , denotes ,
T5646 685-690 NNP denotes Abcam
T5645 683-684 , denotes ,
T5644 678-683 CD denotes 1:100
T5643 677-678 -LRB- denotes (
T5642 673-676 NNP denotes IgG
T5641 671-672 -RRB- denotes )
T5640 661-671 NNP denotes p65-Thr435
T5639 657-660 CC denotes and
T5638 655-656 , denotes ,
T5637 645-655 NNP denotes p65-Ser529
T5636 643-644 , denotes ,
T5635 633-643 NNP denotes p65-Ser311
T5634 631-632 , denotes ,
T5633 621-631 NNP denotes p65-Ser276
T5632 620-621 -LRB- denotes (
T5631 609-619 NNP denotes anti-NF-κB
T5630 598-608 NNP denotes IgG/rabbit
T5629 588-597 JJ denotes anti-GFAP
T5628 582-587 NN denotes mouse
T5627 580-581 , denotes ,
T5626 577-580 NNP denotes IgG
T5625 564-576 JJ denotes anti-TNFp75R
T5624 557-563 NN denotes rabbit
T5623 556-557 RB denotes /
T5622 555-556 -RRB- denotes )
T5621 553-555 NNP denotes CA
T5620 551-552 , denotes ,
T5619 543-551 NNP denotes Berkeley
T5618 541-542 , denotes ,
T5617 534-541 NNP denotes Covance
T5616 532-533 , denotes ,
T5615 526-532 CD denotes 1:1000
T5614 525-526 -LRB- denotes (
T5509 0-6 RB denotes Double
T5530 124-132 NNS denotes Sections
T5529 122-123 . denotes .
T5528 111-122 NN denotes temperature
T5527 106-110 NN denotes room
T5526 103-105 IN denotes at
T5525 99-102 NN denotes min
T5524 96-98 CD denotes 30
T5523 92-95 IN denotes for
T5522 88-91 NNP denotes PBS
T5521 85-87 IN denotes in
T5520 77-84 NN denotes albumin
T5519 71-76 NN denotes serum
T5518 64-70 JJ denotes bovine
T5517 62-63 NN denotes %
T5516 61-62 CD denotes 3
T5515 56-60 IN denotes with
T5514 46-55 VBN denotes incubated
T5513 41-45 VBD denotes were
T5512 32-40 NNS denotes Sections
T5511 26-31 NN denotes study
T5510 7-25 NN denotes immunofluorescence
R4456 T5509 T5514 advmod Double,incubated
R4457 T5510 T5512 compound immunofluorescence,Sections
R4458 T5511 T5512 compound study,Sections
R4459 T5512 T5514 nsubjpass Sections,incubated
R4460 T5513 T5514 auxpass were,incubated
R4461 T5514 T5514 ROOT incubated,incubated
R4462 T5515 T5514 prep with,incubated
R4463 T5516 T5517 nummod 3,%
R4464 T5517 T5520 compound %,albumin
R4465 T5518 T5519 amod bovine,serum
R4466 T5519 T5520 compound serum,albumin
R4467 T5520 T5515 pobj albumin,with
R4468 T5521 T5520 prep in,albumin
R4469 T5522 T5521 pobj PBS,in
R4470 T5523 T5520 prep for,albumin
R4471 T5524 T5525 nummod 30,min
R4472 T5525 T5523 pobj min,for
R4473 T5526 T5525 prep at,min
R4474 T5527 T5528 compound room,temperature
R4475 T5528 T5526 pobj temperature,at
R4476 T5529 T5514 punct .,incubated
R4477 T5530 T5533 nsubjpass Sections,incubated
R4478 T5531 T5533 auxpass were,incubated
R4479 T5532 T5533 advmod then,incubated
R4480 T5533 T5533 ROOT incubated,incubated
R4481 T5534 T5533 prep in,incubated
R4482 T5535 T5536 det a,mixture
R4483 T5536 T5534 pobj mixture,in
R4484 T5537 T5536 prep of,mixture
R4485 T5538 T5540 compound goat,IgG
R4486 T5539 T5540 compound anti-TNF-α,IgG
R4487 T5540 T5537 pobj IgG,of
R4488 T5541 T5540 punct (,IgG
R4489 T5542 T5540 appos 1:1000,IgG
R4490 T5543 T5540 punct ",",IgG
R4491 T5544 T5545 compound R&D,systems
R4492 T5545 T5540 appos systems,IgG
R4493 T5546 T5545 punct ",",systems
R4494 T5547 T5545 appos Minneapolis,systems
R4495 T5548 T5547 punct ",",Minneapolis
R4496 T5549 T5547 appos MN,Minneapolis
R4497 T5550 T5545 punct ),systems
R4498 T5551 T5552 compound /,mouse
R4499 T5552 T5533 npadvmod mouse,incubated
R4500 T5553 T5554 compound anti-OX-42,IgG
R4501 T5554 T5552 dobj IgG,mouse
R4502 T5555 T5554 punct (,IgG
R4503 T5556 T5554 appos 1:100,IgG
R4504 T5557 T5554 punct ",",IgG
R4505 T5558 T5554 conj Serotec,IgG
R4506 T5559 T5558 punct ",",Serotec
R4507 T5560 T5558 conj Cambridge,Serotec
R4508 T5561 T5560 punct ",",Cambridge
R4509 T5562 T5560 conj UK,Cambridge
R4510 T5563 T5560 punct ),Cambridge
R4511 T5564 T5560 punct ",",Cambridge
R4512 T5565 T5567 compound mouse,IgG
R4513 T5566 T5567 compound anti-GFAP,IgG
R4514 T5567 T5554 conj IgG,IgG
R4515 T5568 T5567 punct (,IgG
R4516 T5569 T5567 appos 1:1000,IgG
R4517 T5570 T5567 punct ",",IgG
R4518 T5571 T5573 det an,marker
R4519 T5572 T5573 amod astroglial,marker
R4520 T5573 T5567 conj marker,IgG
R4521 T5574 T5573 punct ",",marker
R4522 T5575 T5576 compound Millipore,Corporation
R4523 T5576 T5573 appos Corporation,marker
R4524 T5577 T5576 punct ",",Corporation
R4525 T5578 T5576 conj Billerica,Corporation
R4526 T5579 T5578 punct ",",Billerica
R4527 T5580 T5578 conj MA,Billerica
R4528 T5581 T5573 punct ),marker
R4529 T5582 T5583 amod /,rabbit
R4530 T5583 T5583 ROOT rabbit,rabbit
R4531 T5584 T5585 compound anti-TNFp55R,IgG
R4532 T5585 T5583 dobj IgG,rabbit
R4533 T5586 T5585 punct (,IgG
R4534 T5587 T5585 appos 1:1000,IgG
R4535 T5588 T5585 punct ",",IgG
R4536 T5589 T5585 conj Abcam,IgG
R4537 T5590 T5589 punct ",",Abcam
R4538 T5591 T5589 conj Cambridge,Abcam
R4539 T5592 T5591 punct ",",Cambridge
R4540 T5593 T5591 conj UK,Cambridge
R4541 T5594 T5591 punct ),Cambridge
R4542 T5595 T5591 punct ",",Cambridge
R4543 T5596 T5600 amod mouse,IgG
R4544 T5597 T5600 amod anti-GFAP,IgG
R4545 T5598 T5599 compound IgG/rabbit,anti-TNFp75R
R4546 T5599 T5600 compound anti-TNFp75R,IgG
R4547 T5600 T5585 conj IgG,IgG
R4548 T5601 T5600 punct (,IgG
R4549 T5602 T5600 appos 1:1000,IgG
R4550 T5603 T5600 punct ",",IgG
R4551 T5604 T5600 conj Abcam,IgG
R4552 T5605 T5604 punct ",",Abcam
R4553 T5606 T5604 conj Cambridge,Abcam
R4554 T5607 T5606 punct ",",Cambridge
R4555 T5608 T5606 conj UK,Cambridge
R4556 T5609 T5606 punct ),Cambridge
R4557 T5610 T5606 punct ",",Cambridge
R4558 T5611 T5613 compound mouse,IgM
R4559 T5612 T5613 compound anti-SMI-71,IgM
R4560 T5613 T5604 conj IgM,Abcam
R4561 T5614 T5613 punct (,IgM
R4562 T5615 T5613 appos 1:1000,IgM
R4563 T5616 T5613 punct ",",IgM
R4564 T5617 T5613 conj Covance,IgM
R4565 T5618 T5617 punct ",",Covance
R4566 T5619 T5617 conj Berkeley,Covance
R4567 T5620 T5619 punct ",",Berkeley
R4568 T5621 T5619 conj CA,Berkeley
R4569 T5622 T5583 punct ),rabbit
R4570 T5623 T5626 poss /,IgG
R4571 T5624 T5626 compound rabbit,IgG
R4572 T5625 T5626 compound anti-TNFp75R,IgG
R4573 T5626 T5626 ROOT IgG,IgG
R4574 T5627 T5626 punct ",",IgG
R4575 T5628 T5631 compound mouse,anti-NF-κB
R4576 T5629 T5631 compound anti-GFAP,anti-NF-κB
R4577 T5630 T5631 compound IgG/rabbit,anti-NF-κB
R4578 T5631 T5626 conj anti-NF-κB,IgG
R4579 T5632 T5633 punct (,p65-Ser276
R4580 T5633 T5631 appos p65-Ser276,anti-NF-κB
R4581 T5634 T5633 punct ",",p65-Ser276
R4582 T5635 T5633 conj p65-Ser311,p65-Ser276
R4583 T5636 T5635 punct ",",p65-Ser311
R4584 T5637 T5635 conj p65-Ser529,p65-Ser311
R4585 T5638 T5637 punct ",",p65-Ser529
R4586 T5639 T5637 cc and,p65-Ser529
R4587 T5640 T5637 conj p65-Thr435,p65-Ser529
R4588 T5641 T5640 punct ),p65-Thr435
R4589 T5642 T5637 conj IgG,p65-Ser529
R4590 T5643 T5642 punct (,IgG
R4591 T5644 T5642 appos 1:100,IgG
R4592 T5645 T5642 punct ",",IgG
R4593 T5646 T5642 conj Abcam,IgG
R4594 T5647 T5646 punct ",",Abcam
R4595 T5648 T5646 conj Cambridge,Abcam
R4596 T5649 T5648 punct ",",Cambridge
R4597 T5650 T5648 conj UK,Cambridge
R4598 T5651 T5648 punct ),Cambridge
R4599 T5652 T5648 punct ",",Cambridge
R4600 T5653 T5658 compound mouse,IgG
R4601 T5654 T5658 compound anti-SMI-71,IgG
R4602 T5655 T5657 compound IgM/rabbit,NF-κB
R4603 T5656 T5657 compound anti-p65-Thr435,NF-κB
R4604 T5657 T5658 compound NF-κB,IgG
R4605 T5658 T5646 conj IgG,Abcam
R4606 T5659 T5658 punct ",",IgG
R4607 T5660 T5664 compound mouse,IgG
R4608 T5661 T5664 compound anti-SMI-71,IgG
R4609 T5662 T5663 compound IgM/rabbit,anti-GLUT-1
R4610 T5663 T5664 compound anti-GLUT-1,IgG
R4611 T5664 T5658 conj IgG,IgG
R4612 T5665 T5664 punct (,IgG
R4613 T5666 T5664 appos 1:100,IgG
R4614 T5667 T5664 punct ",",IgG
R4615 T5668 T5664 conj Abcam,IgG
R4616 T5669 T5668 punct ",",Abcam
R4617 T5670 T5668 conj Cambridge,Abcam
R4618 T5671 T5670 punct ",",Cambridge
R4619 T5672 T5670 conj UK,Cambridge
R4620 T5673 T5670 punct ),Cambridge
R4621 T5674 T5670 punct ",",Cambridge
R4622 T5675 T5664 cc or,IgG
R4623 T5676 T5680 compound mouse,IgG
R4624 T5677 T5680 compound anti-GFAP,IgG
R4625 T5678 T5679 compound IgG/rabbit,anti-MIP-2
R4626 T5679 T5680 compound anti-MIP-2,IgG
R4627 T5680 T5664 conj IgG,IgG
R4628 T5681 T5680 punct (,IgG
R4629 T5682 T5680 appos 1:100,IgG
R4630 T5683 T5680 punct ),IgG
R4631 T5684 T5686 prep in,containing
R4632 T5685 T5684 pobj PBS,in
R4633 T5686 T5626 prep containing,IgG
R4634 T5687 T5688 nummod 0.3,%
R4635 T5688 T5690 compound %,X-100
R4636 T5689 T5690 compound triton,X-100
R4637 T5690 T5691 compound X-100,overnight
R4638 T5691 T5686 dobj overnight,containing
R4639 T5692 T5686 prep at,containing
R4640 T5693 T5694 compound room,temperature
R4641 T5694 T5692 pobj temperature,at
R4642 T5695 T5626 punct .,IgG
R4643 T5696 T5709 prep After,incubated
R4644 T5697 T5696 pcomp washing,After
R4645 T5698 T5699 nummod three,times
R4646 T5699 T5697 dobj times,washing
R4647 T5700 T5697 prep for,washing
R4648 T5701 T5702 nummod 10,minutes
R4649 T5702 T5700 pobj minutes,for
R4650 T5703 T5697 prep with,washing
R4651 T5704 T5703 pobj PBS,with
R4652 T5705 T5709 punct ",",incubated
R4653 T5706 T5709 nsubjpass sections,incubated
R4654 T5707 T5709 auxpass were,incubated
R4655 T5708 T5709 advmod also,incubated
R4656 T5709 T5709 ROOT incubated,incubated
R4657 T5710 T5709 prep in,incubated
R4658 T5711 T5712 det a,mixture
R4659 T5712 T5710 pobj mixture,in
R4660 T5713 T5712 prep of,mixture
R4661 T5714 T5713 pobj FITC,of
R4662 T5715 T5712 punct -,mixture
R4663 T5716 T5712 cc and,mixture
R4664 T5717 T5719 amod Cy3-conjugated,antisera
R4665 T5718 T5719 amod secondary,antisera
R4666 T5719 T5712 conj antisera,mixture
R4667 T5720 T5721 punct (,Amersham
R4668 T5721 T5719 appos Amersham,antisera
R4669 T5722 T5721 punct ",",Amersham
R4670 T5723 T5724 compound San,Francisco
R4671 T5724 T5721 npadvmod Francisco,Amersham
R4672 T5725 T5721 punct ",",Amersham
R4673 T5726 T5721 appos CA,Amersham
R4674 T5727 T5721 punct ),Amersham
R4675 T5728 T5721 punct ",",Amersham
R4676 T5729 T5721 acl diluted,Amersham
R4677 T5730 T5729 appos 1:200,diluted
R4678 T5731 T5721 punct ",",Amersham
R4679 T5732 T5721 prep for,Amersham
R4680 T5733 T5734 nummod 2,hr
R4681 T5734 T5732 pobj hr,for
R4682 T5735 T5734 prep at,hr
R4683 T5736 T5737 compound room,temperature
R4684 T5737 T5735 pobj temperature,at
R4685 T5738 T5709 punct .,incubated
R4686 T5739 T5740 det The,sections
R4687 T5740 T5742 nsubjpass sections,washed
R4688 T5741 T5742 auxpass were,washed
R4689 T5742 T5742 ROOT washed,washed
R4690 T5743 T5744 nummod three,times
R4691 T5744 T5742 npadvmod times,washed
R4692 T5745 T5742 prep for,washed
R4693 T5746 T5747 nummod 10,min
R4694 T5747 T5745 pobj min,for
R4695 T5748 T5747 prep with,min
R4696 T5749 T5748 pobj PBS,with
R4697 T5750 T5742 punct ",",washed
R4698 T5751 T5742 cc and,washed
R4699 T5752 T5742 conj mounted,washed
R4700 T5753 T5752 prep on,mounted
R4701 T5754 T5755 amod gelatin-coated,slides
R4702 T5755 T5753 pobj slides,on
R4703 T5756 T5742 punct .,washed
R4704 T5757 T5762 prep For,used
R4705 T5758 T5759 compound nuclei,counterstaining
R4706 T5759 T5757 pobj counterstaining,For
R4707 T5760 T5762 punct ",",used
R4708 T5761 T5762 nsubj we,used
R4709 T5762 T5762 ROOT used,used
R4710 T5763 T5762 dobj Vectashield,used
R4711 T5764 T5765 amod mounting,medium
R4712 T5765 T5763 appos medium,Vectashield
R4713 T5766 T5765 prep with,medium
R4714 T5767 T5766 pobj DAPI,with
R4715 T5768 T5769 punct (,Vector
R4716 T5769 T5767 appos Vector,DAPI
R4717 T5770 T5769 punct ",",Vector
R4718 T5771 T5769 conj Burlingame,Vector
R4719 T5772 T5771 punct ",",Burlingame
R4720 T5773 T5771 conj CA,Burlingame
R4721 T5774 T5771 punct ),Burlingame
R4722 T5775 T5762 punct .,used
R4723 T5776 T5777 det All,images
R4724 T5777 T5779 nsubjpass images,captured
R4725 T5778 T5779 auxpass were,captured
R4726 T5779 T5779 ROOT captured,captured
R4727 T5780 T5779 advcl using,captured
R4728 T5781 T5784 det an,microscope
R4729 T5782 T5784 compound AxioImage,microscope
R4730 T5783 T5784 compound M2,microscope
R4731 T5784 T5780 dobj microscope,using
R4732 T5785 T5784 cc and,microscope
R4733 T5786 T5787 compound AxioVision,Rel
R4734 T5787 T5784 conj Rel,microscope
R4735 T5788 T5779 punct .,captured
R4736 T5789 T5790 nummod 4.8,software
R4737 T5790 T5790 ROOT software,software
R4738 T5791 T5790 punct .,software

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T5803 621-624 Protein denotes p65
T5802 602-619 Protein denotes rabbit anti-NF-κB
T5801 582-601 Protein denotes mouse anti-GFAP IgG
T5800 564-580 Protein denotes anti-TNFp75R IgG
T5799 427-470 Protein denotes mouse anti-GFAP IgG/rabbit anti-TNFp75R IgG
T5798 378-394 Protein denotes anti-TNFp55R IgG
T5797 282-301 Protein denotes mouse anti-GFAP IgG
T5796 169-188 Protein denotes goat anti-TNF-α IgG
T5795 71-84 Protein denotes serum albumin
T5815 645-655 Entity denotes p65-Ser529
T5814 633-643 Entity denotes p65-Ser311
T5813 250-255 Entity denotes 1:100
T5812 863-884 Protein denotes rabbit anti-MIP-2 IgG
T5811 843-862 Protein denotes mouse anti-GFAP IgG
T5810 786-808 Protein denotes rabbit anti-GLUT-1 IgG
T5809 764-785 Protein denotes mouse anti-SMI-71 IgM
T5808 753-762 Protein denotes NF-κB IgG
T5807 746-752 Protein denotes Thr435
T5806 742-745 Protein denotes p65
T5805 726-729 Protein denotes IgM
T5804 625-631 Protein denotes Ser276
R4739 T5813 T5796 SiteParent 1:100,goat anti-TNF-α IgG
R4740 T5813 T5797 SiteParent 1:100,mouse anti-GFAP IgG
R4741 T5814 T5801 SiteParent p65-Ser311,mouse anti-GFAP IgG
R4742 T5814 T5802 SiteParent p65-Ser311,rabbit anti-NF-κB
R4743 T5814 T5803 SiteParent p65-Ser311,p65
R4744 T5814 T5804 SiteParent p65-Ser311,Ser276
R4745 T5815 T5801 SiteParent p65-Ser529,mouse anti-GFAP IgG
R4746 T5815 T5803 SiteParent p65-Ser529,p65
R4747 T5815 T5804 SiteParent p65-Ser529,Ser276

testone

Id Subject Object Predicate Lexical cue
T5365 71-84 Protein denotes serum albumin

test3

Id Subject Object Predicate Lexical cue
T5367 71-84 Protein denotes serum albumin
T5366 71-84 Protein denotes serum albumin