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PMC:3312845 / 1153-1611 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T431 445-449 NN denotes cell
T430 433-444 JJ denotes endothelial
T429 430-432 IN denotes of
T428 418-429 NN denotes impairments
T427 413-417 IN denotes that
T426 405-412 VB denotes suggest
T425 396-404 NN denotes findings
T424 390-395 DT denotes These
T423 379-389 NN denotes Conclusion
T422 374-376 NN denotes PC
T421 370-373 DT denotes the
T420 367-369 IN denotes in
T419 354-366 NN denotes infiltration
T418 343-353 NN denotes neutrophil
T417 332-342 JJ denotes SE-induced
T416 324-331 VB denotes reduced
T415 315-323 NN denotes infusion
T414 306-314 NN denotes sTNFp55R
T413 304-305 -COMMA- denotes ,
T412 293-304 RB denotes Furthermore
T411 286-291 NN denotes cells
T410 274-285 JJ denotes endothelial
T409 271-273 IN denotes in
T408 255-270 NN denotes phosphorylation
T407 244-254 NN denotes p65-Thr435
T406 241-243 IN denotes of
T405 230-240 NN denotes inhibition
T404 226-229 IN denotes via
T403 218-225 NN denotes damages
T402 209-217 JJ denotes neuronal
T401 205-208 CC denotes and
T400 199-204 NN denotes edema
T399 189-198 JJ denotes vasogenic
T398 178-188 JJ denotes SE-induced
T397 167-177 VB denotes attenuated
T396 158-166 NN denotes infusion
T395 156-157 -RRB- denotes )
T394 148-156 NN denotes sTNFp55R
T393 147-148 -LRB- denotes (
T392 138-146 NN denotes receptor
T391 134-137 NN denotes p55
T390 130-133 NN denotes TNF
T389 122-129 JJ denotes soluble
T388 119-121 IN denotes by
T387 113-118 NN denotes TNF-α
T386 110-112 IN denotes of
T385 95-109 NN denotes Neutralization
T384 92-93 -RRB- denotes )
T383 85-92 NN denotes antigen
T382 77-84 NN denotes barrier
T381 65-76 JJ denotes endothelial
T380 62-64 DT denotes an
T379 61-62 -LRB- denotes (
T378 50-60 NN denotes expression
T377 43-49 NN denotes SMI-71
T376 40-42 IN denotes by
T375 28-39 VB denotes accompanied
T374 22-27 NN denotes cells
T373 10-21 JJ denotes endothelial
T372 7-9 IN denotes in
R203 T374 T372 arg2Of cells,in
R204 T374 T373 arg1Of cells,endothelial
R205 T374 T375 arg2Of cells,accompanied
R206 T378 T375 arg1Of expression,accompanied
R207 T378 T376 arg2Of expression,by
R208 T378 T377 arg1Of expression,SMI-71
R209 T378 T379 arg1Of expression,(
R210 T383 T379 arg2Of antigen,(
R211 T383 T380 arg1Of antigen,an
R212 T383 T381 arg1Of antigen,endothelial
R213 T383 T382 arg1Of antigen,barrier
R214 T384 T379 arg3Of ),(
R215 T385 T386 arg1Of Neutralization,of
R216 T385 T388 arg1Of Neutralization,by
R217 T385 T397 arg1Of Neutralization,attenuated
R218 T387 T386 arg2Of TNF-α,of
R219 T392 T389 arg1Of receptor,soluble
R220 T392 T390 arg1Of receptor,TNF
R221 T392 T391 arg1Of receptor,p55
R222 T392 T393 arg1Of receptor,(
R223 T394 T393 arg2Of sTNFp55R,(
R224 T395 T393 arg3Of ),(
R225 T396 T388 arg2Of infusion,by
R226 T396 T392 arg1Of infusion,receptor
R227 T397 T404 arg1Of attenuated,via
R228 T399 T400 arg1Of vasogenic,edema
R229 T399 T401 arg1Of vasogenic,and
R230 T402 T401 arg2Of neuronal,and
R231 T403 T397 arg2Of damages,attenuated
R232 T403 T398 arg1Of damages,SE-induced
R233 T403 T399 arg1Of damages,vasogenic
R234 T403 T402 arg1Of damages,neuronal
R235 T405 T404 arg2Of inhibition,via
R236 T405 T406 arg1Of inhibition,of
R237 T408 T406 arg2Of phosphorylation,of
R238 T408 T407 arg1Of phosphorylation,p65-Thr435
R239 T408 T409 arg1Of phosphorylation,in
R240 T411 T409 arg2Of cells,in
R241 T411 T410 arg1Of cells,endothelial
R242 T415 T414 arg1Of infusion,sTNFp55R
R243 T415 T416 arg1Of infusion,reduced
R244 T416 T412 arg1Of reduced,Furthermore
R245 T416 T413 arg1Of reduced,","
R246 T419 T416 arg2Of infiltration,reduced
R247 T419 T417 arg1Of infiltration,SE-induced
R248 T419 T418 arg1Of infiltration,neutrophil
R249 T419 T420 arg1Of infiltration,in
R250 T422 T420 arg2Of PC,in
R251 T422 T421 arg1Of PC,the
R252 T425 T424 arg1Of findings,These
R253 T425 T426 arg1Of findings,suggest
R254 T428 T429 arg1Of impairments,of

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T154 113-118 Protein denotes TNF-α
T155 130-146 Protein denotes TNF p55 receptor
T156 149-156 Protein denotes TNFp55R
T157 244-247 Protein denotes p65
T158 307-314 Protein denotes TNFp55R

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T479 134-137 http://www.uniprot.org/uniprot/P01589 denotes p55
T476 113-118 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T460 244-247 http://www.uniprot.org/uniprot/Q04206 denotes p65
T464 244-247 http://www.uniprot.org/uniprot/P21579 denotes p65
T471 113-116 http://www.uniprot.org/uniprot/P01375 denotes TNF
T472 130-133 http://www.uniprot.org/uniprot/P01375 denotes TNF

GO-BP

Id Subject Object Predicate Lexical cue
T171 255-270 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T182 22-27 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T183 286-291 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T184 445-449 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T115 379-389 Sentence denotes Conclusion
T114 293-377 Sentence denotes Furthermore, sTNFp55R infusion reduced SE-induced neutrophil infiltration in the PC.
T113 95-292 Sentence denotes Neutralization of TNF-α by soluble TNF p55 receptor (sTNFp55R) infusion attenuated SE-induced vasogenic edema and neuronal damages via inhibition of p65-Thr435 phosphorylation in endothelial cells.
T13 95-292 Sentence denotes Neutralization of TNF-α by soluble TNF p55 receptor (sTNFp55R) infusion attenuated SE-induced vasogenic edema and neuronal damages via inhibition of p65-Thr435 phosphorylation in endothelial cells.
T14 293-377 Sentence denotes Furthermore, sTNFp55R infusion reduced SE-induced neutrophil infiltration in the PC.
T15 379-389 Sentence denotes Conclusion

simple1

Id Subject Object Predicate Lexical cue
T198 307-314 Protein denotes TNFp55R
T197 244-247 Protein denotes p65
T196 149-156 Protein denotes TNFp55R
T195 130-146 Protein denotes TNF p55 receptor
T194 113-118 Protein denotes TNF-α

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T918 113-118 Protein denotes TNF-α
T919 130-146 Protein denotes TNF p55 receptor
T920 149-156 Protein denotes TNFp55R
T921 244-247 Protein denotes p65
T922 307-314 Protein denotes TNFp55R
T929 255-270 Phosphorylation denotes phosphorylation
T930 230-240 Negative_regulation denotes inhibition
T931 95-109 Negative_regulation denotes Neutralization
R649 T918 T931 themeOf TNF-α,Neutralization
R650 T921 T929 themeOf p65,phosphorylation
R652 T929 T930 themeOf phosphorylation,inhibition

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T763 307-314 Protein denotes TNFp55R
T762 244-247 Protein denotes p65
T761 149-156 Protein denotes TNFp55R
T760 130-146 Protein denotes TNF p55 receptor
T759 113-118 Protein denotes TNF-α
T773 230-240 Negative_regulation denotes inhibition
T772 255-270 Phosphorylation denotes phosphorylation
T771 95-109 Negative_regulation denotes Neutralization
R558 T759 T771 themeOf TNF-α,Neutralization
R559 T762 T772 themeOf p65,phosphorylation
R565 T772 T773 themeOf phosphorylation,inhibition

DLUT931

Id Subject Object Predicate Lexical cue
T817 230-240 Negative_regulation denotes inhibition
T816 255-270 Phosphorylation denotes phosphorylation
T801 113-118 Protein denotes TNF-α
T802 130-146 Protein denotes TNF p55 receptor
T803 149-156 Protein denotes TNFp55R
T804 244-247 Protein denotes p65
T805 307-314 Protein denotes TNFp55R
T814 95-109 Negative_regulation denotes Neutralization
T815 158-166 Positive_regulation denotes infusion
R566 T816 T817 themeOf phosphorylation,inhibition
R627 T801 T814 themeOf TNF-α,Neutralization
R628 T802 T815 themeOf TNF p55 receptor,infusion
R629 T804 T816 themeOf p65,phosphorylation

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T982 433-449 Entity denotes endothelial cell
T981 306-314 Entity denotes sTNFp55R
T980 85-92 Entity denotes antigen
T972 110-118 Protein denotes of TNF-α
T969 315-323 Entity denotes infusion
T963 10-60 Entity denotes endothelial cells accompanied by SMI-71 expression
T936 241-254 Entity denotes of p65-Thr435
T932 119-157 Protein denotes by soluble TNF p55 receptor (sTNFp55R)
T941 343-353 Entity denotes neutrophil
T947 178-180 Entity denotes SE
T948 241-254 Protein denotes of p65-Thr435
T949 370-376 Protein denotes the PC
T952 158-166 Entity denotes infusion
T953 306-314 Protein denotes sTNFp55R
T955 332-342 Entity denotes SE-induced
T960 274-291 Entity denotes endothelial cells

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T721 445-449 NN denotes cell
T720 433-444 JJ denotes endothelial
T719 430-432 IN denotes of
T718 418-429 NNS denotes impairments
T717 413-417 IN denotes that
T716 405-412 VBP denotes suggest
T715 396-404 NNS denotes findings
T714 390-395 DT denotes These
T713 379-389 NNP denotes Conclusion
T712 376-377 . denotes .
T711 374-376 NN denotes PC
T710 370-373 DT denotes the
T709 367-369 IN denotes in
T708 354-366 NN denotes infiltration
T707 343-353 NN denotes neutrophil
T706 332-342 JJ denotes SE-induced
T705 324-331 VBN denotes reduced
T704 315-323 NN denotes infusion
T703 306-314 JJ denotes sTNFp55R
T702 304-305 , denotes ,
T701 293-304 RB denotes Furthermore
T700 291-292 . denotes .
T699 286-291 NNS denotes cells
T698 274-285 JJ denotes endothelial
T697 271-273 IN denotes in
T696 255-270 NN denotes phosphorylation
T695 244-254 NN denotes p65-Thr435
T694 241-243 IN denotes of
T693 230-240 NN denotes inhibition
T692 226-229 IN denotes via
T691 218-225 NNS denotes damages
T690 209-217 JJ denotes neuronal
T689 205-208 CC denotes and
T688 199-204 NN denotes edema
T687 189-198 JJ denotes vasogenic
T686 178-188 JJ denotes SE-induced
T685 167-177 VBD denotes attenuated
T684 158-166 NN denotes infusion
T683 156-157 -RRB- denotes )
T682 148-156 JJ denotes sTNFp55R
T681 147-148 -LRB- denotes (
T680 138-146 NN denotes receptor
T679 134-137 NN denotes p55
T678 130-133 NNP denotes TNF
T677 122-129 JJ denotes soluble
T676 119-121 IN denotes by
T675 113-118 JJ denotes TNF-α
T674 110-112 IN denotes of
T673 95-109 NN denotes Neutralization
T672 93-94 . denotes .
T671 92-93 -RRB- denotes )
T670 85-92 NN denotes antigen
T669 77-84 NN denotes barrier
T668 65-76 JJ denotes endothelial
T667 62-64 DT denotes an
T666 61-62 -LRB- denotes (
T665 50-60 NN denotes expression
T664 43-49 NNP denotes SMI-71
T663 40-42 IN denotes by
T662 28-39 VBN denotes accompanied
T661 22-27 NNS denotes cells
T660 10-21 JJ denotes endothelial
T659 7-9 IN denotes in
R510 T704 T705 nsubj infusion,reduced
R511 T705 T705 ROOT reduced,reduced
R512 T706 T708 amod SE-induced,infiltration
R513 T707 T708 compound neutrophil,infiltration
R514 T708 T705 dobj infiltration,reduced
R515 T709 T705 prep in,reduced
R516 T710 T711 det the,PC
R517 T711 T709 pobj PC,in
R466 T660 T661 amod endothelial,cells
R467 T661 T659 pobj cells,in
R468 T662 T661 acl accompanied,cells
R469 T663 T662 agent by,accompanied
R470 T664 T665 compound SMI-71,expression
R471 T665 T663 pobj expression,by
R472 T666 T665 punct (,expression
R473 T667 T670 det an,antigen
R474 T668 T670 amod endothelial,antigen
R475 T669 T670 compound barrier,antigen
R476 T670 T665 appos antigen,expression
R477 T671 T665 punct ),expression
R479 T673 T685 nsubj Neutralization,attenuated
R480 T674 T673 prep of,Neutralization
R481 T675 T674 pobj TNF-α,of
R482 T676 T673 prep by,Neutralization
R483 T677 T680 amod soluble,receptor
R484 T678 T680 nmod TNF,receptor
R485 T679 T680 compound p55,receptor
R486 T680 T684 nmod receptor,infusion
R487 T681 T682 punct (,sTNFp55R
R488 T682 T680 appos sTNFp55R,receptor
R489 T683 T680 punct ),receptor
R490 T684 T676 pobj infusion,by
R491 T685 T685 ROOT attenuated,attenuated
R492 T686 T688 nmod SE-induced,edema
R493 T687 T688 amod vasogenic,edema
R494 T688 T685 dobj edema,attenuated
R495 T689 T688 cc and,edema
R496 T690 T691 amod neuronal,damages
R497 T691 T688 conj damages,edema
R498 T692 T685 prep via,attenuated
R499 T693 T692 pobj inhibition,via
R500 T694 T693 prep of,inhibition
R501 T695 T696 compound p65-Thr435,phosphorylation
R502 T696 T694 pobj phosphorylation,of
R503 T697 T696 prep in,phosphorylation
R504 T698 T699 amod endothelial,cells
R505 T699 T697 pobj cells,in
R506 T700 T685 punct .,attenuated
R507 T701 T705 advmod Furthermore,reduced
R508 T702 T705 punct ",",reduced
R509 T703 T704 amod sTNFp55R,infusion
R518 T712 T705 punct .,reduced
R519 T713 T716 advmod Conclusion,suggest
R520 T714 T715 det These,findings
R521 T715 T716 nsubj findings,suggest
R522 T716 T716 ROOT suggest,suggest
R525 T719 T718 prep of,impairments

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T870 306-314 Protein denotes sTNFp55R
T869 230-240 Negative_regulation denotes inhibition
T868 230-240 Negative_regulation denotes inhibition
T867 255-270 Phosphorylation denotes phosphorylation
T866 255-270 Phosphorylation denotes phosphorylation
T865 95-109 Negative_regulation denotes Neutralization
T864 248-254 Protein denotes Thr435
T863 244-247 Protein denotes p65
T862 148-156 Protein denotes sTNFp55R
T861 130-146 Protein denotes TNF p55 receptor
T860 113-118 Protein denotes TNF-α
R576 T866 T868 themeOf phosphorylation,inhibition
R577 T867 T869 themeOf phosphorylation,inhibition
R578 T868 T865 Cause inhibition,Neutralization
R579 T869 T865 Cause inhibition,Neutralization
R573 T860 T865 themeOf TNF-α,Neutralization
R574 T863 T866 themeOf p65,phosphorylation
R575 T864 T867 themeOf Thr435,phosphorylation

testone

Id Subject Object Predicate Lexical cue
T26 113-118 Protein denotes TNF-α
T27 130-146 Protein denotes TNF p55 receptor
T28 149-156 Protein denotes TNFp55R
T29 244-247 Protein denotes p65
T30 307-314 Protein denotes TNFp55R
T43 50-60 Gene_expression denotes expression
T44 95-109 Negative_regulation denotes Neutralization
T45 230-240 Negative_regulation denotes inhibition
T46 255-270 Phosphorylation denotes phosphorylation
R6 T26 T44 themeOf TNF-α,Neutralization
R7 T27 T44 causeOf TNF p55 receptor,Neutralization
R8 T29 T46 themeOf p65,phosphorylation
R14 T46 T45 themeOf phosphorylation,inhibition

test3

Id Subject Object Predicate Lexical cue
T89 306-314 Protein denotes sTNFp55R
T88 255-270 Phosphorylation denotes phosphorylation
T87 244-247 Protein denotes p65
T86 230-240 Negative_regulation denotes inhibition
T85 148-156 Protein denotes sTNFp55R
T84 130-146 Protein denotes TNF p55 receptor
T83 113-118 Protein denotes TNF-α
T82 95-109 Negative_regulation denotes Neutralization
T81 50-60 Gene_expression denotes expression
T58 113-118 Protein denotes TNF-α
T59 130-146 Protein denotes TNF p55 receptor
T60 149-156 Protein denotes TNFp55R
T61 244-247 Protein denotes p65
T62 307-314 Protein denotes TNFp55R
R27 T84 T82 causeOf TNF p55 receptor,Neutralization
R28 T85 T84 equivalentTo sTNFp55R,TNF p55 receptor
R29 T87 T88 themeOf p65,phosphorylation
R30 T88 T86 themeOf phosphorylation,inhibition
R26 T83 T82 themeOf TNF-α,Neutralization