> top > docs > PMC:3312845 > spans > 1117-1575 > annotations

PMC:3312845 / 1117-1575 JSONTXT

Annnotations TAB JSON ListView MergeView

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T427 449-453 IN denotes that
T426 441-448 VB denotes suggest
T425 432-440 NN denotes findings
T424 426-431 DT denotes These
T423 415-425 NN denotes Conclusion
T422 410-412 NN denotes PC
T421 406-409 DT denotes the
T420 403-405 IN denotes in
T419 390-402 NN denotes infiltration
T418 379-389 NN denotes neutrophil
T417 368-378 JJ denotes SE-induced
T416 360-367 VB denotes reduced
T415 351-359 NN denotes infusion
T414 342-350 NN denotes sTNFp55R
T413 340-341 -COMMA- denotes ,
T412 329-340 RB denotes Furthermore
T411 322-327 NN denotes cells
T410 310-321 JJ denotes endothelial
T409 307-309 IN denotes in
T408 291-306 NN denotes phosphorylation
T407 280-290 NN denotes p65-Thr435
T406 277-279 IN denotes of
T405 266-276 NN denotes inhibition
T404 262-265 IN denotes via
T403 254-261 NN denotes damages
T402 245-253 JJ denotes neuronal
T401 241-244 CC denotes and
T400 235-240 NN denotes edema
T399 225-234 JJ denotes vasogenic
T398 214-224 JJ denotes SE-induced
T397 203-213 VB denotes attenuated
T396 194-202 NN denotes infusion
T395 192-193 -RRB- denotes )
T394 184-192 NN denotes sTNFp55R
T393 183-184 -LRB- denotes (
T392 174-182 NN denotes receptor
T391 170-173 NN denotes p55
T390 166-169 NN denotes TNF
T389 158-165 JJ denotes soluble
T388 155-157 IN denotes by
T387 149-154 NN denotes TNF-α
T386 146-148 IN denotes of
T385 131-145 NN denotes Neutralization
T384 128-129 -RRB- denotes )
T383 121-128 NN denotes antigen
T382 113-120 NN denotes barrier
T381 101-112 JJ denotes endothelial
T380 98-100 DT denotes an
T379 97-98 -LRB- denotes (
T378 86-96 NN denotes expression
T377 79-85 NN denotes SMI-71
T376 76-78 IN denotes by
T375 64-75 VB denotes accompanied
T374 58-63 NN denotes cells
T373 46-57 JJ denotes endothelial
T372 43-45 IN denotes in
T371 33-42 VB denotes increased
T370 29-32 VB denotes was
T369 13-28 NN denotes phosphorylation
T368 2-12 NN denotes p65-Thr435
R196 T369 T368 arg1Of phosphorylation,p65-Thr435
R197 T369 T370 arg1Of phosphorylation,was
R198 T369 T371 arg2Of phosphorylation,increased
R201 T371 T370 arg2Of increased,was
R202 T371 T372 arg1Of increased,in
R203 T374 T372 arg2Of cells,in
R204 T374 T373 arg1Of cells,endothelial
R205 T374 T375 arg2Of cells,accompanied
R206 T378 T375 arg1Of expression,accompanied
R207 T378 T376 arg2Of expression,by
R208 T378 T377 arg1Of expression,SMI-71
R209 T378 T379 arg1Of expression,(
R210 T383 T379 arg2Of antigen,(
R211 T383 T380 arg1Of antigen,an
R212 T383 T381 arg1Of antigen,endothelial
R213 T383 T382 arg1Of antigen,barrier
R214 T384 T379 arg3Of ),(
R215 T385 T386 arg1Of Neutralization,of
R216 T385 T388 arg1Of Neutralization,by
R217 T385 T397 arg1Of Neutralization,attenuated
R218 T387 T386 arg2Of TNF-α,of
R219 T392 T389 arg1Of receptor,soluble
R220 T392 T390 arg1Of receptor,TNF
R221 T392 T391 arg1Of receptor,p55
R222 T392 T393 arg1Of receptor,(
R223 T394 T393 arg2Of sTNFp55R,(
R224 T395 T393 arg3Of ),(
R225 T396 T388 arg2Of infusion,by
R226 T396 T392 arg1Of infusion,receptor
R227 T397 T404 arg1Of attenuated,via
R228 T399 T400 arg1Of vasogenic,edema
R229 T399 T401 arg1Of vasogenic,and
R230 T402 T401 arg2Of neuronal,and
R231 T403 T397 arg2Of damages,attenuated
R232 T403 T398 arg1Of damages,SE-induced
R233 T403 T399 arg1Of damages,vasogenic
R234 T403 T402 arg1Of damages,neuronal
R235 T405 T404 arg2Of inhibition,via
R236 T405 T406 arg1Of inhibition,of
R237 T408 T406 arg2Of phosphorylation,of
R238 T408 T407 arg1Of phosphorylation,p65-Thr435
R239 T408 T409 arg1Of phosphorylation,in
R240 T411 T409 arg2Of cells,in
R241 T411 T410 arg1Of cells,endothelial
R242 T415 T414 arg1Of infusion,sTNFp55R
R243 T415 T416 arg1Of infusion,reduced
R244 T416 T412 arg1Of reduced,Furthermore
R245 T416 T413 arg1Of reduced,","
R246 T419 T416 arg2Of infiltration,reduced
R247 T419 T417 arg1Of infiltration,SE-induced
R248 T419 T418 arg1Of infiltration,neutrophil
R249 T419 T420 arg1Of infiltration,in
R250 T422 T420 arg2Of PC,in
R251 T422 T421 arg1Of PC,the
R252 T425 T424 arg1Of findings,These
R253 T425 T426 arg1Of findings,suggest

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T153 2-5 Protein denotes p65
T154 149-154 Protein denotes TNF-α
T155 166-182 Protein denotes TNF p55 receptor
T156 185-192 Protein denotes TNFp55R
T157 280-283 Protein denotes p65
T158 343-350 Protein denotes TNFp55R

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T479 170-173 http://www.uniprot.org/uniprot/P01589 denotes p55
T476 149-154 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T459 2-5 http://www.uniprot.org/uniprot/Q04206 denotes p65
T460 280-283 http://www.uniprot.org/uniprot/Q04206 denotes p65
T463 2-5 http://www.uniprot.org/uniprot/P21579 denotes p65
T464 280-283 http://www.uniprot.org/uniprot/P21579 denotes p65
T471 149-152 http://www.uniprot.org/uniprot/P01375 denotes TNF
T472 166-169 http://www.uniprot.org/uniprot/P01375 denotes TNF

GO-BP

Id Subject Object Predicate Lexical cue
T171 291-306 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T170 13-28 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T182 58-63 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T183 322-327 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T115 415-425 Sentence denotes Conclusion
T114 329-413 Sentence denotes Furthermore, sTNFp55R infusion reduced SE-induced neutrophil infiltration in the PC.
T113 131-328 Sentence denotes Neutralization of TNF-α by soluble TNF p55 receptor (sTNFp55R) infusion attenuated SE-induced vasogenic edema and neuronal damages via inhibition of p65-Thr435 phosphorylation in endothelial cells.
T13 131-328 Sentence denotes Neutralization of TNF-α by soluble TNF p55 receptor (sTNFp55R) infusion attenuated SE-induced vasogenic edema and neuronal damages via inhibition of p65-Thr435 phosphorylation in endothelial cells.
T14 329-413 Sentence denotes Furthermore, sTNFp55R infusion reduced SE-induced neutrophil infiltration in the PC.
T15 415-425 Sentence denotes Conclusion

simple1

Id Subject Object Predicate Lexical cue
T198 343-350 Protein denotes TNFp55R
T197 280-283 Protein denotes p65
T196 185-192 Protein denotes TNFp55R
T195 166-182 Protein denotes TNF p55 receptor
T194 149-154 Protein denotes TNF-α
T193 2-5 Protein denotes p65

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T917 2-5 Protein denotes p65
T918 149-154 Protein denotes TNF-α
T919 166-182 Protein denotes TNF p55 receptor
T920 185-192 Protein denotes TNFp55R
T921 280-283 Protein denotes p65
T922 343-350 Protein denotes TNFp55R
T927 33-42 Positive_regulation denotes increased
T928 13-28 Phosphorylation denotes phosphorylation
T929 291-306 Phosphorylation denotes phosphorylation
T930 266-276 Negative_regulation denotes inhibition
T931 131-145 Negative_regulation denotes Neutralization
R648 T917 T928 themeOf p65,phosphorylation
R649 T918 T931 themeOf TNF-α,Neutralization
R650 T921 T929 themeOf p65,phosphorylation
R651 T928 T927 themeOf phosphorylation,increased
R652 T929 T930 themeOf phosphorylation,inhibition

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T763 343-350 Protein denotes TNFp55R
T762 280-283 Protein denotes p65
T761 185-192 Protein denotes TNFp55R
T760 166-182 Protein denotes TNF p55 receptor
T759 149-154 Protein denotes TNF-α
T758 2-5 Protein denotes p65
T773 266-276 Negative_regulation denotes inhibition
T772 291-306 Phosphorylation denotes phosphorylation
T771 131-145 Negative_regulation denotes Neutralization
T770 33-42 Positive_regulation denotes increased
T769 13-28 Phosphorylation denotes phosphorylation
R557 T758 T769 themeOf p65,phosphorylation
R558 T759 T771 themeOf TNF-α,Neutralization
R559 T762 T772 themeOf p65,phosphorylation
R564 T769 T770 themeOf phosphorylation,increased
R565 T772 T773 themeOf phosphorylation,inhibition

DLUT931

Id Subject Object Predicate Lexical cue
T817 266-276 Negative_regulation denotes inhibition
T816 291-306 Phosphorylation denotes phosphorylation
T800 2-5 Protein denotes p65
T801 149-154 Protein denotes TNF-α
T802 166-182 Protein denotes TNF p55 receptor
T803 185-192 Protein denotes TNFp55R
T804 280-283 Protein denotes p65
T805 343-350 Protein denotes TNFp55R
T812 13-28 Phosphorylation denotes phosphorylation
T813 33-42 Positive_regulation denotes increased
T814 131-145 Negative_regulation denotes Neutralization
T815 194-202 Positive_regulation denotes infusion
R566 T816 T817 themeOf phosphorylation,inhibition
R626 T800 T812 themeOf p65,phosphorylation
R627 T801 T814 themeOf TNF-α,Neutralization
R628 T802 T815 themeOf TNF p55 receptor,infusion
R629 T804 T816 themeOf p65,phosphorylation
R634 T812 T813 themeOf phosphorylation,increased

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T981 342-350 Entity denotes sTNFp55R
T980 121-128 Entity denotes antigen
T972 146-154 Protein denotes of TNF-α
T969 351-359 Entity denotes infusion
T963 46-96 Entity denotes endothelial cells accompanied by SMI-71 expression
T936 277-290 Entity denotes of p65-Thr435
T932 155-193 Protein denotes by soluble TNF p55 receptor (sTNFp55R)
T939 2-12 Entity denotes p65-Thr435
T941 379-389 Entity denotes neutrophil
T943 2-12 Protein denotes p65-Thr435
T947 214-216 Entity denotes SE
T948 277-290 Protein denotes of p65-Thr435
T949 406-412 Protein denotes the PC
T952 194-202 Entity denotes infusion
T953 342-350 Protein denotes sTNFp55R
T955 368-378 Entity denotes SE-induced
T960 310-327 Entity denotes endothelial cells
R656 T939 T943 partOf p65-Thr435,p65-Thr435

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T717 449-453 IN denotes that
T716 441-448 VBP denotes suggest
T715 432-440 NNS denotes findings
T714 426-431 DT denotes These
T713 415-425 NNP denotes Conclusion
T712 412-413 . denotes .
T711 410-412 NN denotes PC
T710 406-409 DT denotes the
T709 403-405 IN denotes in
T708 390-402 NN denotes infiltration
T707 379-389 NN denotes neutrophil
T706 368-378 JJ denotes SE-induced
T705 360-367 VBN denotes reduced
T704 351-359 NN denotes infusion
T703 342-350 JJ denotes sTNFp55R
T702 340-341 , denotes ,
T701 329-340 RB denotes Furthermore
T700 327-328 . denotes .
T699 322-327 NNS denotes cells
T698 310-321 JJ denotes endothelial
T697 307-309 IN denotes in
T696 291-306 NN denotes phosphorylation
T695 280-290 NN denotes p65-Thr435
T694 277-279 IN denotes of
T693 266-276 NN denotes inhibition
T692 262-265 IN denotes via
T691 254-261 NNS denotes damages
T690 245-253 JJ denotes neuronal
T689 241-244 CC denotes and
T688 235-240 NN denotes edema
T687 225-234 JJ denotes vasogenic
T686 214-224 JJ denotes SE-induced
T685 203-213 VBD denotes attenuated
T684 194-202 NN denotes infusion
T683 192-193 -RRB- denotes )
T682 184-192 JJ denotes sTNFp55R
T681 183-184 -LRB- denotes (
T680 174-182 NN denotes receptor
T679 170-173 NN denotes p55
T678 166-169 NNP denotes TNF
T677 158-165 JJ denotes soluble
T676 155-157 IN denotes by
T675 149-154 JJ denotes TNF-α
T674 146-148 IN denotes of
T673 131-145 NN denotes Neutralization
T672 129-130 . denotes .
T671 128-129 -RRB- denotes )
T670 121-128 NN denotes antigen
T669 113-120 NN denotes barrier
T668 101-112 JJ denotes endothelial
T667 98-100 DT denotes an
T666 97-98 -LRB- denotes (
T665 86-96 NN denotes expression
T664 79-85 NNP denotes SMI-71
T663 76-78 IN denotes by
T662 64-75 VBN denotes accompanied
T661 58-63 NNS denotes cells
T660 46-57 JJ denotes endothelial
T659 43-45 IN denotes in
T658 33-42 VBN denotes increased
T657 29-32 VBD denotes was
T656 13-28 NN denotes phosphorylation
T655 2-12 JJ denotes p65-Thr435
R510 T704 T705 nsubj infusion,reduced
R511 T705 T705 ROOT reduced,reduced
R512 T706 T708 amod SE-induced,infiltration
R513 T707 T708 compound neutrophil,infiltration
R514 T708 T705 dobj infiltration,reduced
R515 T709 T705 prep in,reduced
R516 T710 T711 det the,PC
R517 T711 T709 pobj PC,in
R461 T655 T656 amod p65-Thr435,phosphorylation
R462 T656 T658 nsubjpass phosphorylation,increased
R463 T657 T658 auxpass was,increased
R464 T658 T658 ROOT increased,increased
R465 T659 T658 prep in,increased
R466 T660 T661 amod endothelial,cells
R467 T661 T659 pobj cells,in
R468 T662 T661 acl accompanied,cells
R469 T663 T662 agent by,accompanied
R470 T664 T665 compound SMI-71,expression
R471 T665 T663 pobj expression,by
R472 T666 T665 punct (,expression
R473 T667 T670 det an,antigen
R474 T668 T670 amod endothelial,antigen
R475 T669 T670 compound barrier,antigen
R476 T670 T665 appos antigen,expression
R477 T671 T665 punct ),expression
R478 T672 T658 punct .,increased
R479 T673 T685 nsubj Neutralization,attenuated
R480 T674 T673 prep of,Neutralization
R481 T675 T674 pobj TNF-α,of
R482 T676 T673 prep by,Neutralization
R483 T677 T680 amod soluble,receptor
R484 T678 T680 nmod TNF,receptor
R485 T679 T680 compound p55,receptor
R486 T680 T684 nmod receptor,infusion
R487 T681 T682 punct (,sTNFp55R
R488 T682 T680 appos sTNFp55R,receptor
R489 T683 T680 punct ),receptor
R490 T684 T676 pobj infusion,by
R491 T685 T685 ROOT attenuated,attenuated
R492 T686 T688 nmod SE-induced,edema
R493 T687 T688 amod vasogenic,edema
R494 T688 T685 dobj edema,attenuated
R495 T689 T688 cc and,edema
R496 T690 T691 amod neuronal,damages
R497 T691 T688 conj damages,edema
R498 T692 T685 prep via,attenuated
R499 T693 T692 pobj inhibition,via
R500 T694 T693 prep of,inhibition
R501 T695 T696 compound p65-Thr435,phosphorylation
R502 T696 T694 pobj phosphorylation,of
R503 T697 T696 prep in,phosphorylation
R504 T698 T699 amod endothelial,cells
R505 T699 T697 pobj cells,in
R506 T700 T685 punct .,attenuated
R507 T701 T705 advmod Furthermore,reduced
R508 T702 T705 punct ",",reduced
R509 T703 T704 amod sTNFp55R,infusion
R518 T712 T705 punct .,reduced
R519 T713 T716 advmod Conclusion,suggest
R520 T714 T715 det These,findings
R521 T715 T716 nsubj findings,suggest
R522 T716 T716 ROOT suggest,suggest

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T870 342-350 Protein denotes sTNFp55R
T869 266-276 Negative_regulation denotes inhibition
T868 266-276 Negative_regulation denotes inhibition
T867 291-306 Phosphorylation denotes phosphorylation
T866 291-306 Phosphorylation denotes phosphorylation
T865 131-145 Negative_regulation denotes Neutralization
T864 284-290 Protein denotes Thr435
T863 280-283 Protein denotes p65
T862 184-192 Protein denotes sTNFp55R
T861 166-182 Protein denotes TNF p55 receptor
T860 149-154 Protein denotes TNF-α
T859 33-42 Positive_regulation denotes increased
T858 33-42 Positive_regulation denotes increased
T857 13-28 Phosphorylation denotes phosphorylation
T856 13-28 Phosphorylation denotes phosphorylation
T855 6-12 Protein denotes Thr435
T854 2-5 Protein denotes p65
R576 T866 T868 themeOf phosphorylation,inhibition
R577 T867 T869 themeOf phosphorylation,inhibition
R578 T868 T865 Cause inhibition,Neutralization
R579 T869 T865 Cause inhibition,Neutralization
R569 T854 T856 themeOf p65,phosphorylation
R570 T855 T857 themeOf Thr435,phosphorylation
R571 T856 T858 themeOf phosphorylation,increased
R572 T857 T859 themeOf phosphorylation,increased
R573 T860 T865 themeOf TNF-α,Neutralization
R574 T863 T866 themeOf p65,phosphorylation
R575 T864 T867 themeOf Thr435,phosphorylation

testone

Id Subject Object Predicate Lexical cue
T25 2-5 Protein denotes p65
T26 149-154 Protein denotes TNF-α
T27 166-182 Protein denotes TNF p55 receptor
T28 185-192 Protein denotes TNFp55R
T29 280-283 Protein denotes p65
T30 343-350 Protein denotes TNFp55R
T41 13-28 Phosphorylation denotes phosphorylation
T42 33-42 Positive_regulation denotes increased
T43 86-96 Gene_expression denotes expression
T44 131-145 Negative_regulation denotes Neutralization
T45 266-276 Negative_regulation denotes inhibition
T46 291-306 Phosphorylation denotes phosphorylation
R5 T25 T41 themeOf p65,phosphorylation
R6 T26 T44 themeOf TNF-α,Neutralization
R7 T27 T44 causeOf TNF p55 receptor,Neutralization
R8 T29 T46 themeOf p65,phosphorylation
R12 T41 T42 themeOf phosphorylation,increased
R13 T43 T42 causeOf expression,increased
R14 T46 T45 themeOf phosphorylation,inhibition

test3

Id Subject Object Predicate Lexical cue
T89 342-350 Protein denotes sTNFp55R
T88 291-306 Phosphorylation denotes phosphorylation
T87 280-283 Protein denotes p65
T86 266-276 Negative_regulation denotes inhibition
T85 184-192 Protein denotes sTNFp55R
T84 166-182 Protein denotes TNF p55 receptor
T83 149-154 Protein denotes TNF-α
T82 131-145 Negative_regulation denotes Neutralization
T81 86-96 Gene_expression denotes expression
T80 33-42 Positive_regulation denotes increased
T79 13-28 Phosphorylation denotes phosphorylation
T78 2-5 Protein denotes p65
T57 2-5 Protein denotes p65
T58 149-154 Protein denotes TNF-α
T59 166-182 Protein denotes TNF p55 receptor
T60 185-192 Protein denotes TNFp55R
T61 280-283 Protein denotes p65
T62 343-350 Protein denotes TNFp55R
R27 T84 T82 causeOf TNF p55 receptor,Neutralization
R28 T85 T84 equivalentTo sTNFp55R,TNF p55 receptor
R29 T87 T88 themeOf p65,phosphorylation
R30 T88 T86 themeOf phosphorylation,inhibition
R23 T78 T79 themeOf p65,phosphorylation
R24 T79 T80 themeOf phosphorylation,increased
R25 T81 T80 causeOf expression,increased
R26 T83 T82 themeOf TNF-α,Neutralization