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PMC:3312845 / 1101-1247 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T384 144-145 -RRB- denotes )
T383 137-144 NN denotes antigen
T382 129-136 NN denotes barrier
T381 117-128 JJ denotes endothelial
T380 114-116 DT denotes an
T379 113-114 -LRB- denotes (
T378 102-112 NN denotes expression
T377 95-101 NN denotes SMI-71
T376 92-94 IN denotes by
T375 80-91 VB denotes accompanied
T374 74-79 NN denotes cells
T373 62-73 JJ denotes endothelial
T372 59-61 IN denotes in
T371 49-58 VB denotes increased
T370 45-48 VB denotes was
T369 29-44 NN denotes phosphorylation
T368 18-28 NN denotes p65-Thr435
T367 13-17 RB denotes only
T366 11-12 -COMMA- denotes ,
T365 3-11 NN denotes addition
T364 0-2 IN denotes In
R194 T365 T364 arg2Of addition,In
R195 T369 T367 arg1Of phosphorylation,only
R196 T369 T368 arg1Of phosphorylation,p65-Thr435
R197 T369 T370 arg1Of phosphorylation,was
R198 T369 T371 arg2Of phosphorylation,increased
R199 T371 T364 arg1Of increased,In
R200 T371 T366 arg1Of increased,","
R201 T371 T370 arg2Of increased,was
R202 T371 T372 arg1Of increased,in
R203 T374 T372 arg2Of cells,in
R204 T374 T373 arg1Of cells,endothelial
R205 T374 T375 arg2Of cells,accompanied
R206 T378 T375 arg1Of expression,accompanied
R207 T378 T376 arg2Of expression,by
R208 T378 T377 arg1Of expression,SMI-71
R209 T378 T379 arg1Of expression,(
R210 T383 T379 arg2Of antigen,(
R211 T383 T380 arg1Of antigen,an
R212 T383 T381 arg1Of antigen,endothelial
R213 T383 T382 arg1Of antigen,barrier
R214 T384 T379 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T153 18-21 Protein denotes p65

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T459 18-21 http://www.uniprot.org/uniprot/Q04206 denotes p65
T463 18-21 http://www.uniprot.org/uniprot/P21579 denotes p65

GO-BP

Id Subject Object Predicate Lexical cue
T170 29-44 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T182 74-79 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T112 0-146 Sentence denotes In addition, only p65-Thr435 phosphorylation was increased in endothelial cells accompanied by SMI-71 expression (an endothelial barrier antigen).
T12 0-146 Sentence denotes In addition, only p65-Thr435 phosphorylation was increased in endothelial cells accompanied by SMI-71 expression (an endothelial barrier antigen).

simple1

Id Subject Object Predicate Lexical cue
T193 18-21 Protein denotes p65

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T917 18-21 Protein denotes p65
T927 49-58 Positive_regulation denotes increased
T928 29-44 Phosphorylation denotes phosphorylation
R648 T917 T928 themeOf p65,phosphorylation
R651 T928 T927 themeOf phosphorylation,increased

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T758 18-21 Protein denotes p65
T770 49-58 Positive_regulation denotes increased
T769 29-44 Phosphorylation denotes phosphorylation
R557 T758 T769 themeOf p65,phosphorylation
R564 T769 T770 themeOf phosphorylation,increased

DLUT931

Id Subject Object Predicate Lexical cue
T800 18-21 Protein denotes p65
T812 29-44 Phosphorylation denotes phosphorylation
T813 49-58 Positive_regulation denotes increased
R626 T800 T812 themeOf p65,phosphorylation
R634 T812 T813 themeOf phosphorylation,increased

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T986 13-58 Positive_regulation denotes only p65-Thr435 phosphorylation was increased
T985 13-44 Phosphorylation denotes only p65-Thr435 phosphorylation
T980 137-144 Entity denotes antigen
T963 62-112 Entity denotes endothelial cells accompanied by SMI-71 expression
T939 18-28 Entity denotes p65-Thr435
T943 18-28 Protein denotes p65-Thr435
R605 T985 T986 themeOf only p65-Thr435 phosphorylation,only p65-Thr435 phosphorylation was increased
R656 T939 T943 partOf p65-Thr435,p65-Thr435
R657 T939 T985 siteOf p65-Thr435,only p65-Thr435 phosphorylation
R658 T943 T985 themeOf p65-Thr435,only p65-Thr435 phosphorylation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T672 145-146 . denotes .
T671 144-145 -RRB- denotes )
T670 137-144 NN denotes antigen
T669 129-136 NN denotes barrier
T668 117-128 JJ denotes endothelial
T667 114-116 DT denotes an
T666 113-114 -LRB- denotes (
T665 102-112 NN denotes expression
T664 95-101 NNP denotes SMI-71
T663 92-94 IN denotes by
T662 80-91 VBN denotes accompanied
T661 74-79 NNS denotes cells
T660 62-73 JJ denotes endothelial
T659 59-61 IN denotes in
T658 49-58 VBN denotes increased
T657 45-48 VBD denotes was
T656 29-44 NN denotes phosphorylation
T655 18-28 JJ denotes p65-Thr435
T654 13-17 RB denotes only
T653 11-12 , denotes ,
T652 3-11 NN denotes addition
T651 0-2 IN denotes In
R457 T651 T658 prep In,increased
R458 T652 T651 pobj addition,In
R459 T653 T658 punct ",",increased
R460 T654 T656 advmod only,phosphorylation
R461 T655 T656 amod p65-Thr435,phosphorylation
R462 T656 T658 nsubjpass phosphorylation,increased
R463 T657 T658 auxpass was,increased
R464 T658 T658 ROOT increased,increased
R465 T659 T658 prep in,increased
R466 T660 T661 amod endothelial,cells
R467 T661 T659 pobj cells,in
R468 T662 T661 acl accompanied,cells
R469 T663 T662 agent by,accompanied
R470 T664 T665 compound SMI-71,expression
R471 T665 T663 pobj expression,by
R472 T666 T665 punct (,expression
R473 T667 T670 det an,antigen
R474 T668 T670 amod endothelial,antigen
R475 T669 T670 compound barrier,antigen
R476 T670 T665 appos antigen,expression
R477 T671 T665 punct ),expression
R478 T672 T658 punct .,increased

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T859 49-58 Positive_regulation denotes increased
T858 49-58 Positive_regulation denotes increased
T857 29-44 Phosphorylation denotes phosphorylation
T856 29-44 Phosphorylation denotes phosphorylation
T855 22-28 Protein denotes Thr435
T854 18-21 Protein denotes p65
R569 T854 T856 themeOf p65,phosphorylation
R570 T855 T857 themeOf Thr435,phosphorylation
R571 T856 T858 themeOf phosphorylation,increased
R572 T857 T859 themeOf phosphorylation,increased

testone

Id Subject Object Predicate Lexical cue
T25 18-21 Protein denotes p65
T41 29-44 Phosphorylation denotes phosphorylation
T42 49-58 Positive_regulation denotes increased
T43 102-112 Gene_expression denotes expression
R5 T25 T41 themeOf p65,phosphorylation
R12 T41 T42 themeOf phosphorylation,increased
R13 T43 T42 causeOf expression,increased

test3

Id Subject Object Predicate Lexical cue
T81 102-112 Gene_expression denotes expression
T80 49-58 Positive_regulation denotes increased
T79 29-44 Phosphorylation denotes phosphorylation
T78 18-21 Protein denotes p65
T57 18-21 Protein denotes p65
R23 T78 T79 themeOf p65,phosphorylation
R24 T79 T80 themeOf phosphorylation,increased
R25 T81 T80 causeOf expression,increased