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PMC:3312845 / 0-255 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T201 0-5 NN denotes Tumor
T202 6-14 NN denotes necrosis
T203 15-32 JJ denotes factor-α-mediated
T204 33-42 NN denotes threonine
T205 43-46 CD denotes 435
T206 47-62 NN denotes phosphorylation
T207 63-65 IN denotes of
T208 66-69 NN denotes p65
T209 70-77 JJ denotes nuclear
T210 78-87 NN denotes factor-κB
T211 88-95 NN denotes subunit
T212 96-98 IN denotes in
T213 99-110 JJ denotes endothelial
T214 111-116 NN denotes cells
T215 117-124 VB denotes induces
T216 125-134 JJ denotes vasogenic
T217 135-140 NN denotes edema
T218 141-144 CC denotes and
T219 145-155 NN denotes neutrophil
T220 156-168 NN denotes infiltration
T221 169-171 IN denotes in
T222 172-175 DT denotes the
T223 176-179 NN denotes rat
T224 180-188 NN denotes piriform
T225 189-195 NN denotes cortex
T226 196-205 VB denotes following
T227 206-212 NN denotes status
T228 213-224 NN denotes epilepticus
T230 246-252 NN denotes Status
T229 235-245 NN denotes Background
R35 T203 T201 arg1Of factor-α-mediated,Tumor
R36 T203 T202 arg1Of factor-α-mediated,necrosis
R37 T206 T203 arg1Of phosphorylation,factor-α-mediated
R38 T206 T204 arg1Of phosphorylation,threonine
R39 T206 T205 arg1Of phosphorylation,435
R40 T206 T207 arg1Of phosphorylation,of
R41 T206 T212 arg1Of phosphorylation,in
R42 T206 T215 arg1Of phosphorylation,induces
R43 T211 T207 arg2Of subunit,of
R44 T211 T208 arg1Of subunit,p65
R45 T211 T209 arg1Of subunit,nuclear
R46 T211 T210 arg1Of subunit,factor-κB
R47 T214 T212 arg2Of cells,in
R48 T214 T213 arg1Of cells,endothelial
R49 T215 T221 arg1Of induces,in
R50 T217 T216 arg1Of edema,vasogenic
R51 T217 T218 arg1Of edema,and
R52 T218 T215 arg2Of and,induces
R53 T220 T218 arg2Of infiltration,and
R54 T220 T219 arg1Of infiltration,neutrophil
R55 T225 T221 arg2Of cortex,in
R56 T225 T222 arg1Of cortex,the
R57 T225 T223 arg1Of cortex,rat
R58 T225 T224 arg1Of cortex,piriform
R59 T225 T226 arg1Of cortex,following
R60 T228 T226 arg2Of epilepticus,following
R61 T228 T227 arg1Of epilepticus,status

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T145 0-23 Protein denotes Tumor necrosis factor-α
T146 66-69 Protein denotes p65

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T458 66-69 http://www.uniprot.org/uniprot/Q04206 denotes p65
T462 66-69 http://www.uniprot.org/uniprot/P21579 denotes p65

UBERON-AE

Id Subject Object Predicate Lexical cue
T94 180-195 http://purl.obolibrary.org/obo/UBERON_0004725 denotes piriform cortex
T96 189-195 http://purl.obolibrary.org/obo/UBERON_0001851 denotes cortex

GO-BP

Id Subject Object Predicate Lexical cue
T165 6-14 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T167 6-14 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis
T169 47-62 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T161 6-14 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis
T163 6-14 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis

GO-CC

Id Subject Object Predicate Lexical cue
T180 111-116 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T103 235-245 Sentence denotes Background
T102 0-224 Sentence denotes Tumor necrosis factor-α-mediated threonine 435 phosphorylation of p65 nuclear factor-κB subunit in endothelial cells induces vasogenic edema and neutrophil infiltration in the rat piriform cortex following status epilepticus
T1 0-224 Sentence denotes Tumor necrosis factor-α-mediated threonine 435 phosphorylation of p65 nuclear factor-κB subunit in endothelial cells induces vasogenic edema and neutrophil infiltration in the rat piriform cortex following status epilepticus
T2 226-234 Sentence denotes Abstract
T3 235-245 Sentence denotes Background

ICD10

Id Subject Object Predicate Lexical cue
T174 206-224 http://purl.bioontology.org/ontology/ICD10/G41.9 denotes status epilepticus
T176 206-224 http://purl.bioontology.org/ontology/ICD10/G41 denotes status epilepticus

simple1

Id Subject Object Predicate Lexical cue
T185 0-23 Protein denotes Tumor necrosis factor-α
T186 66-69 Protein denotes p65

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T909 0-23 Protein denotes Tumor necrosis factor-α
T910 66-69 Protein denotes p65
T925 47-62 Phosphorylation denotes phosphorylation
R646 T910 T925 themeOf p65,phosphorylation

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T766 47-62 Phosphorylation denotes phosphorylation
T767 24-32 Positive_regulation denotes mediated
T750 0-23 Protein denotes Tumor necrosis factor-α
T751 66-69 Protein denotes p65
R563 T766 T767 themeOf phosphorylation,mediated
R622 T751 T766 themeOf p65,phosphorylation

DLUT931

Id Subject Object Predicate Lexical cue
T792 0-23 Protein denotes Tumor necrosis factor-α
T793 66-69 Protein denotes p65
T808 47-62 Phosphorylation denotes phosphorylation
T809 117-124 Positive_regulation denotes induces
T810 24-32 Positive_regulation denotes mediated
R623 T792 T810 causeOf Tumor necrosis factor-α,mediated
R624 T793 T808 themeOf p65,phosphorylation
R632 T808 T809 themeOf phosphorylation,induces
R633 T808 T810 themeOf phosphorylation,mediated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T987 0-116 Regulation denotes Tumor necrosis factor-α-mediated threonine 435 phosphorylation of p65 nuclear factor-κB subunit in endothelial cells
T935 0-23 Protein denotes Tumor necrosis factor-α
T938 33-46 Entity denotes threonine 435
T940 99-116 Entity denotes endothelial cells
T962 145-155 Entity denotes neutrophil
R655 T935 T987 causeOf Tumor necrosis factor-α,Tumor necrosis factor-α-mediated threonine 435 phosphorylation of p65 nuclear factor-κB subunit in endothelial cells

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T480 0-5 NN denotes Tumor
T481 6-14 NN denotes necrosis
T482 15-32 JJ denotes factor-α-mediated
T483 33-42 NN denotes threonine
T484 43-46 CD denotes 435
T485 47-62 NN denotes phosphorylation
T486 63-65 IN denotes of
T487 66-69 CD denotes p65
T488 70-77 JJ denotes nuclear
T489 78-87 JJ denotes factor-κB
T490 88-95 NN denotes subunit
T491 96-98 IN denotes in
T492 99-110 JJ denotes endothelial
T493 111-116 NNS denotes cells
T494 117-124 VBZ denotes induces
T495 125-134 JJ denotes vasogenic
T496 135-140 NN denotes edema
T497 141-144 CC denotes and
T498 145-155 NN denotes neutrophil
T499 156-168 NN denotes infiltration
T500 169-171 IN denotes in
T501 172-175 DT denotes the
T502 176-179 NN denotes rat
T503 180-188 NN denotes piriform
T504 189-195 NN denotes cortex
T505 196-205 VBG denotes following
T506 206-212 NN denotes status
T507 213-224 NN denotes epilepticus
T509 246-252 NNP denotes Status
T508 235-245 NNP denotes Background
R286 T480 T494 nsubj Tumor,induces
R287 T481 T494 dep necrosis,induces
R288 T482 T483 amod factor-α-mediated,threonine
R289 T483 T494 nsubj threonine,induces
R290 T484 T485 nummod 435,phosphorylation
R291 T485 T483 appos phosphorylation,threonine
R292 T486 T485 prep of,phosphorylation
R293 T487 T490 nummod p65,subunit
R294 T488 T490 amod nuclear,subunit
R295 T489 T490 amod factor-κB,subunit
R296 T490 T486 pobj subunit,of
R297 T491 T485 prep in,phosphorylation
R298 T492 T493 amod endothelial,cells
R299 T493 T491 pobj cells,in
R300 T494 T494 ROOT induces,induces
R301 T495 T496 amod vasogenic,edema
R302 T496 T494 dobj edema,induces
R303 T497 T496 cc and,edema
R304 T498 T499 compound neutrophil,infiltration
R305 T499 T496 conj infiltration,edema
R306 T500 T494 prep in,induces
R308 T502 T503 compound rat,piriform
R309 T503 T504 compound piriform,cortex
R310 T504 T505 advmod cortex,following
R311 T505 T507 amod following,epilepticus
R312 T506 T507 compound status,epilepticus
R314 T508 T509 compound Background,Status

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T841 0-23 Protein denotes Tumor necrosis factor-α
T842 66-95 Protein denotes p65 nuclear factor-κB subunit
T843 47-62 Phosphorylation denotes phosphorylation
T844 117-124 Positive_regulation denotes induces
T845 24-32 Positive_regulation denotes mediated
R642 T842 T843 themeOf p65 nuclear factor-κB subunit,phosphorylation
R643 T843 T844 themeOf phosphorylation,induces
R644 T843 T845 themeOf phosphorylation,mediated
R645 T845 T841 Cause mediated,Tumor necrosis factor-α

testone

Id Subject Object Predicate Lexical cue
T17 0-23 Protein denotes Tumor necrosis factor-α
T18 66-69 Protein denotes p65
T33 24-32 Positive_regulation denotes mediated
T34 47-62 Phosphorylation denotes phosphorylation
R1 T17 T33 causeOf Tumor necrosis factor-α,mediated
R2 T18 T34 themeOf p65,phosphorylation
R11 T34 T33 themeOf phosphorylation,mediated

test3

Id Subject Object Predicate Lexical cue
T49 0-23 Protein denotes Tumor necrosis factor-α
T50 66-69 Protein denotes p65
T65 0-23 Protein denotes Tumor necrosis factor-α
T66 24-32 Positive_regulation denotes mediated
T67 47-62 Phosphorylation denotes phosphorylation
T68 66-69 Protein denotes p65
R16 T65 T66 causeOf Tumor necrosis factor-α,mediated
R17 T67 T66 themeOf phosphorylation,mediated
R18 T68 T67 themeOf p65,phosphorylation