
PMC:3291650 / 9697-9836
Annnotations
test3
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2_test
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pmc-enju-pas
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bionlp-st-ge-2016-test-proteins
{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T4898","span":{"begin":111,"end":116},"obj":"Protein"},{"id":"T4897","span":{"begin":90,"end":94},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Previous studies have shown that ectopically expressed A20 negatively regulates NF-κB and IRF3 activation upon RIG-I stimulation [50]–[52]."}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T6659","span":{"begin":90,"end":94},"obj":"http://www.uniprot.org/uniprot/Q14653"},{"id":"T6639","span":{"begin":55,"end":58},"obj":"http://www.uniprot.org/uniprot/P21580"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"Previous studies have shown that ectopically expressed A20 negatively regulates NF-κB and IRF3 activation upon RIG-I stimulation [50]–[52]."}
sentences
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simple1
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BioNLP16_DUT
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BioNLP16_Messiy
{"project":"BioNLP16_Messiy","denotations":[{"id":"T6702","span":{"begin":111,"end":116},"obj":"Protein"},{"id":"T6701","span":{"begin":90,"end":94},"obj":"Protein"},{"id":"T6754","span":{"begin":70,"end":79},"obj":"Regulation"},{"id":"T6753","span":{"begin":95,"end":105},"obj":"Positive_regulation"}],"relations":[{"id":"R4901","pred":"themeOf","subj":"T6701","obj":"T6753"},{"id":"R4909","pred":"themeOf","subj":"T6753","obj":"T6754"}],"text":"Previous studies have shown that ectopically expressed A20 negatively regulates NF-κB and IRF3 activation upon RIG-I stimulation [50]–[52]."}
DLUT931
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bionlp-st-ge-2016-test-ihmc
{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T7545","span":{"begin":90,"end":105},"obj":"Positive_regulation"},{"id":"T7521","span":{"begin":111,"end":116},"obj":"Protein"},{"id":"T7511","span":{"begin":90,"end":94},"obj":"Protein"},{"id":"T7465","span":{"begin":45,"end":58},"obj":"Protein"},{"id":"T7402","span":{"begin":80,"end":85},"obj":"Protein"},{"id":"T7533","span":{"begin":111,"end":133},"obj":"Positive_regulation"}],"relations":[{"id":"R5339","pred":"themeOf","subj":"T7511","obj":"T7545"},{"id":"R5346","pred":"themeOf","subj":"T7521","obj":"T7533"}],"text":"Previous studies have shown that ectopically expressed A20 negatively regulates NF-κB and IRF3 activation upon RIG-I stimulation [50]–[52]."}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T5909","span":{"begin":138,"end":139},"obj":"."},{"id":"T5908","span":{"begin":137,"end":138},"obj":"NNP"},{"id":"T5907","span":{"begin":135,"end":137},"obj":"CD"},{"id":"T5906","span":{"begin":134,"end":135},"obj":"NNP"},{"id":"T5905","span":{"begin":132,"end":133},"obj":"NNP"},{"id":"T5904","span":{"begin":130,"end":132},"obj":"CD"},{"id":"T5903","span":{"begin":129,"end":130},"obj":"NNP"},{"id":"T5902","span":{"begin":117,"end":128},"obj":"NN"},{"id":"T5901","span":{"begin":111,"end":116},"obj":"NNP"},{"id":"T5900","span":{"begin":106,"end":110},"obj":"IN"},{"id":"T5899","span":{"begin":95,"end":105},"obj":"NN"},{"id":"T5898","span":{"begin":90,"end":94},"obj":"NNP"},{"id":"T5897","span":{"begin":86,"end":89},"obj":"CC"},{"id":"T5896","span":{"begin":80,"end":85},"obj":"NNP"},{"id":"T5895","span":{"begin":70,"end":79},"obj":"VBZ"},{"id":"T5894","span":{"begin":59,"end":69},"obj":"RB"},{"id":"T5893","span":{"begin":55,"end":58},"obj":"NNP"},{"id":"T5892","span":{"begin":45,"end":54},"obj":"VBN"},{"id":"T5891","span":{"begin":33,"end":44},"obj":"RB"},{"id":"T5890","span":{"begin":28,"end":32},"obj":"IN"},{"id":"T5889","span":{"begin":22,"end":27},"obj":"VBN"},{"id":"T5888","span":{"begin":17,"end":21},"obj":"VBP"},{"id":"T5887","span":{"begin":9,"end":16},"obj":"NNS"},{"id":"T5886","span":{"begin":0,"end":8},"obj":"JJ"}],"relations":[{"id":"R4145","pred":"amod","subj":"T5886","obj":"T5887"},{"id":"R4146","pred":"nsubj","subj":"T5887","obj":"T5889"},{"id":"R4147","pred":"aux","subj":"T5888","obj":"T5889"},{"id":"R4148","pred":"ROOT","subj":"T5889","obj":"T5889"},{"id":"R4149","pred":"mark","subj":"T5890","obj":"T5892"},{"id":"R4150","pred":"nsubj","subj":"T5891","obj":"T5892"},{"id":"R4151","pred":"ccomp","subj":"T5892","obj":"T5889"},{"id":"R4152","pred":"dobj","subj":"T5893","obj":"T5892"},{"id":"R4153","pred":"advmod","subj":"T5894","obj":"T5895"},{"id":"R4154","pred":"conj","subj":"T5895","obj":"T5889"},{"id":"R4155","pred":"dobj","subj":"T5896","obj":"T5895"},{"id":"R4156","pred":"cc","subj":"T5897","obj":"T5896"},{"id":"R4157","pred":"conj","subj":"T5898","obj":"T5896"},{"id":"R4158","pred":"conj","subj":"T5899","obj":"T5896"},{"id":"R4159","pred":"prep","subj":"T5900","obj":"T5895"},{"id":"R4160","pred":"compound","subj":"T5901","obj":"T5902"},{"id":"R4161","pred":"compound","subj":"T5902","obj":"T5903"},{"id":"R4162","pred":"ccomp","subj":"T5903","obj":"T5906"},{"id":"R4163","pred":"nummod","subj":"T5904","obj":"T5905"},{"id":"R4164","pred":"nmod","subj":"T5905","obj":"T5906"},{"id":"R4165","pred":"nmod","subj":"T5906","obj":"T5908"},{"id":"R4166","pred":"nummod","subj":"T5907","obj":"T5908"},{"id":"R4167","pred":"dobj","subj":"T5908","obj":"T5895"},{"id":"R4168","pred":"punct","subj":"T5909","obj":"T5889"}],"text":"Previous studies have shown that ectopically expressed A20 negatively regulates NF-κB and IRF3 activation upon RIG-I stimulation [50]–[52]."}
bionlp-st-ge-2016-test-tees
{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T7006","span":{"begin":70,"end":79},"obj":"Regulation"},{"id":"T7005","span":{"begin":70,"end":79},"obj":"Regulation"},{"id":"T7004","span":{"begin":95,"end":105},"obj":"Positive_regulation"},{"id":"T7003","span":{"begin":95,"end":105},"obj":"Positive_regulation"},{"id":"T7002","span":{"begin":45,"end":54},"obj":"Gene_expression"},{"id":"T7001","span":{"begin":111,"end":116},"obj":"Protein"},{"id":"T7000","span":{"begin":90,"end":94},"obj":"Protein"},{"id":"T6999","span":{"begin":80,"end":85},"obj":"Protein"},{"id":"T6998","span":{"begin":55,"end":58},"obj":"Protein"}],"relations":[{"id":"R5069","pred":"themeOf","subj":"T6998","obj":"T7002"},{"id":"R5070","pred":"themeOf","subj":"T6999","obj":"T7003"},{"id":"R5072","pred":"themeOf","subj":"T7000","obj":"T7004"},{"id":"R5077","pred":"themeOf","subj":"T7003","obj":"T7005"},{"id":"R5078","pred":"themeOf","subj":"T7004","obj":"T7006"}],"text":"Previous studies have shown that ectopically expressed A20 negatively regulates NF-κB and IRF3 activation upon RIG-I stimulation [50]–[52]."}
testone
{"project":"testone","denotations":[{"id":"T4523","span":{"begin":45,"end":54},"obj":"Gene_expression"},{"id":"T4476","span":{"begin":111,"end":116},"obj":"Protein"},{"id":"T4475","span":{"begin":90,"end":94},"obj":"Protein"}],"text":"Previous studies have shown that ectopically expressed A20 negatively regulates NF-κB and IRF3 activation upon RIG-I stimulation [50]–[52]."}