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PMC:3291650 / 866-1110 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T21 126-130 Protein denotes IRF3
T16 126-130 Protein denotes IRF3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T221 226-230 NN denotes type
T220 222-225 CC denotes and
T219 211-221 NN denotes chemokines
T218 209-210 -COMMA- denotes ,
T217 200-209 NN denotes cytokines
T216 184-199 JJ denotes proinflammatory
T215 181-183 IN denotes of
T214 170-180 NN denotes production
T213 160-169 VB denotes increased
T212 155-159 IN denotes with
T211 143-154 JJ denotes concomitant
T210 141-142 -COMMA- denotes ,
T209 131-141 NN denotes activation
T208 126-130 NN denotes IRF3
T207 122-125 CC denotes and
T206 116-121 NN denotes NF-κB
T205 107-115 VB denotes enhanced
T204 104-106 IN denotes by
T203 92-103 VB denotes illustrated
T202 89-91 IN denotes as
T201 87-88 -COMMA- denotes ,
T200 78-87 NN denotes infection
T199 74-77 NN denotes IAV
T198 70-73 CC denotes and
T197 66-69 NN denotes RNA
T196 57-65 JJ denotes stranded
T195 50-56 VB denotes double
T194 47-49 TO denotes to
T193 31-46 JJ denotes hyperresponsive
T192 26-30 VB denotes were
T191 14-25 NN denotes macrophages
T190 4-13 JJ denotes deficient
T189 0-3 NN denotes A20
T223 233-243 NN denotes interferon
T222 231-232 CD denotes I
R120 T191 T189 arg1Of macrophages,A20
R121 T191 T190 arg1Of macrophages,deficient
R122 T191 T192 arg1Of macrophages,were
R123 T191 T193 arg1Of macrophages,hyperresponsive
R124 T191 T195 arg1Of macrophages,double
R125 T192 T201 arg1Of were,","
R126 T192 T202 arg1Of were,as
R127 T193 T192 arg2Of hyperresponsive,were
R128 T195 T193 arg2Of double,hyperresponsive
R129 T195 T194 arg1Of double,to
R130 T197 T198 arg1Of RNA,and
R131 T199 T198 arg2Of IAV,and
R132 T200 T195 arg2Of infection,double
R133 T200 T196 arg1Of infection,stranded
R134 T200 T197 arg1Of infection,RNA
R135 T200 T199 arg1Of infection,IAV
R136 T203 T202 arg2Of illustrated,as
R137 T206 T205 arg2Of NF-κB,enhanced
R138 T206 T207 arg1Of NF-κB,and
R139 T207 T203 arg1Of and,illustrated
R140 T207 T204 arg2Of and,by
R141 T207 T210 arg1Of and,","
R142 T207 T211 arg1Of and,concomitant
R143 T209 T207 arg2Of activation,and
R144 T209 T208 arg1Of activation,IRF3
R145 T211 T212 arg1Of concomitant,with
R146 T214 T212 arg2Of production,with
R147 T214 T213 arg2Of production,increased
R148 T214 T215 arg1Of production,of
R149 T217 T216 arg1Of cytokines,proinflammatory
R150 T217 T218 arg1Of cytokines,","
R151 T218 T220 arg1Of ",",and
R152 T219 T218 arg2Of chemokines,","
R153 T220 T215 arg2Of and,of
R154 T223 T220 arg2Of interferon,and
R155 T223 T221 arg1Of interferon,type
R156 T223 T222 arg1Of interferon,I

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T43 126-130 Protein denotes IRF3

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T541 126-130 http://www.uniprot.org/uniprot/Q14653 denotes IRF3
T538 0-3 http://www.uniprot.org/uniprot/P21580 denotes A20

sentences

Id Subject Object Predicate Lexical cue
T29 0-244 Sentence denotes A20 deficient macrophages were hyperresponsive to double stranded RNA and IAV infection, as illustrated by enhanced NF-κB and IRF3 activation, concomitant with increased production of proinflammatory cytokines, chemokines and type I interferon.
T8 0-244 Sentence denotes A20 deficient macrophages were hyperresponsive to double stranded RNA and IAV infection, as illustrated by enhanced NF-κB and IRF3 activation, concomitant with increased production of proinflammatory cytokines, chemokines and type I interferon.

simple1

Id Subject Object Predicate Lexical cue
T68 126-130 Protein denotes IRF3

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T610 126-130 Protein denotes IRF3
T613 131-141 Positive_regulation denotes activation
T614 107-115 Positive_regulation denotes enhanced
R508 T610 T613 themeOf IRF3,activation
R509 T613 T614 themeOf activation,enhanced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T548 131-141 Positive_regulation denotes activation
T545 126-130 Protein denotes IRF3
R499 T545 T548 themeOf IRF3,activation

DLUT931

Id Subject Object Predicate Lexical cue
T552 126-130 Protein denotes IRF3
T555 131-141 Positive_regulation denotes activation
T556 107-115 Positive_regulation denotes enhanced
R503 T552 T555 themeOf IRF3,activation
R504 T555 T556 themeOf activation,enhanced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T654 126-243 Positive_regulation denotes IRF3 activation, concomitant with increased production of proinflammatory cytokines, chemokines and type I interferon
T652 107-121 Positive_regulation denotes enhanced NF-κB
T648 160-243 Positive_regulation denotes increased production of proinflammatory cytokines, chemokines and type I interferon
T646 126-130 Protein denotes IRF3
T630 211-221 Protein denotes chemokines
T619 107-121 Protein denotes enhanced NF-κB
T625 0-3 Protein denotes A20
T636 184-209 Protein denotes proinflammatory cytokines
T639 0-25 Entity denotes A20 deficient macrophages
R512 T619 T652 themeOf enhanced NF-κB,enhanced NF-κB
R481 T646 T654 themeOf IRF3,"IRF3 activation, concomitant with increased production of proinflammatory cytokines, chemokines and type I interferon"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T459 243-244 . denotes .
T458 233-243 VBP denotes interferon
T457 231-232 PRP denotes I
T456 226-230 NN denotes type
T455 222-225 CC denotes and
T454 211-221 NNS denotes chemokines
T453 209-210 , denotes ,
T452 200-209 NNS denotes cytokines
T451 184-199 JJ denotes proinflammatory
T450 181-183 IN denotes of
T449 170-180 NN denotes production
T448 160-169 JJ denotes increased
T447 155-159 IN denotes with
T446 143-154 NN denotes concomitant
T445 141-142 , denotes ,
T444 131-141 NN denotes activation
T443 126-130 JJ denotes IRF3
T442 122-125 CC denotes and
T441 116-121 NN denotes NF-κB
T440 107-115 JJ denotes enhanced
T439 104-106 IN denotes by
T438 92-103 VBN denotes illustrated
T437 89-91 IN denotes as
T436 87-88 , denotes ,
T435 78-87 NN denotes infection
T434 74-77 NNP denotes IAV
T433 70-73 CC denotes and
T432 66-69 NNP denotes RNA
T431 57-65 VBN denotes stranded
T430 50-56 VB denotes double
T429 47-49 TO denotes to
T428 31-46 JJ denotes hyperresponsive
T427 26-30 VBD denotes were
T426 14-25 NNS denotes macrophages
T425 4-13 JJ denotes deficient
T424 0-3 CD denotes A20
R344 T424 T426 nummod A20,macrophages
R345 T425 T426 amod deficient,macrophages
R346 T426 T427 nsubj macrophages,were
R347 T427 T427 ROOT were,were
R348 T428 T427 acomp hyperresponsive,were
R349 T429 T430 aux to,double
R350 T430 T428 xcomp double,hyperresponsive
R351 T431 T432 amod stranded,RNA
R352 T432 T430 dobj RNA,double
R353 T433 T432 cc and,RNA
R354 T434 T435 compound IAV,infection
R355 T435 T432 conj infection,RNA
R356 T436 T427 punct ",",were
R357 T437 T438 mark as,illustrated
R358 T438 T427 advcl illustrated,were
R359 T439 T438 agent by,illustrated
R360 T440 T441 amod enhanced,NF-κB
R361 T441 T439 pobj NF-κB,by
R362 T442 T441 cc and,NF-κB
R363 T443 T444 amod IRF3,activation
R364 T444 T441 conj activation,NF-κB
R365 T445 T444 punct ",",activation
R366 T446 T444 conj concomitant,activation
R367 T447 T441 prep with,NF-κB
R368 T448 T449 amod increased,production
R369 T449 T447 pobj production,with
R370 T450 T449 prep of,production
R371 T451 T452 amod proinflammatory,cytokines
R372 T452 T450 pobj cytokines,of
R373 T453 T452 punct ",",cytokines
R374 T454 T452 conj chemokines,cytokines
R375 T455 T454 cc and,chemokines
R376 T456 T454 conj type,chemokines
R377 T457 T458 nsubj I,interferon
R378 T458 T452 relcl interferon,cytokines
R379 T459 T427 punct .,were

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T581 160-169 Positive_regulation denotes increased
T580 107-115 Positive_regulation denotes enhanced
T579 107-115 Positive_regulation denotes enhanced
T578 170-180 Gene_expression denotes production
T577 131-141 Positive_regulation denotes activation
T576 131-141 Positive_regulation denotes activation
T575 226-243 Protein denotes type I interferon
T574 126-130 Protein denotes IRF3
T573 116-121 Protein denotes NF-κB
R461 T573 T576 themeOf NF-κB,activation
R462 T574 T577 themeOf IRF3,activation
R463 T575 T578 themeOf type I interferon,production
R464 T576 T579 themeOf activation,enhanced
R465 T577 T580 themeOf activation,enhanced
R466 T578 T581 themeOf production,increased

testone

Id Subject Object Predicate Lexical cue
T11 4-13 Negative_regulation denotes deficient
T8 126-130 Protein denotes IRF3