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PMC:3291650 / 8165-8543 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T908 362-367 Protein denotes IRF-3
T907 331-338 Positive_regulation denotes induced
T906 326-330 Protein denotes TLR3
T905 315-320 Protein denotes RIG-I
T904 306-314 Regulation denotes regulate
T839 362-367 Protein denotes IRF-3
T838 326-330 Protein denotes TLR3
T837 315-320 Protein denotes RIG-I
R549 T905 T907 causeOf RIG-I,induced
R550 T906 T907 causeOf TLR3,induced
R551 T907 T904 themeOf induced,regulate

2_test

Id Subject Object Predicate Lexical cue
22396652-16765340-98461845 369-371 16765340 denotes 49
22396652-15661910-98461846 374-376 15661910 denotes 52

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2339 376-377 -RRB- denotes ]
T2338 374-376 CD denotes 52
T2337 373-374 -LRB- denotes [
T2336 372-373 CD denotes –
T2335 371-372 -RRB- denotes ]
T2334 369-371 CD denotes 49
T2333 368-369 -LRB- denotes [
T2332 362-367 NN denotes IRF-3
T2331 358-361 CC denotes and
T2330 352-357 NN denotes NF-κB
T2329 349-351 TO denotes to
T2328 339-348 NN denotes signaling
T2327 326-338 JJ denotes TLR3-induced
T2326 322-325 CC denotes and
T2325 315-321 NN denotes RIG-I-
T2324 306-314 VB denotes regulate
T2323 302-305 MD denotes may
T2322 298-301 NN denotes A20
T2321 293-297 IN denotes that
T2320 282-292 VB denotes indicating
T2319 280-281 -COMMA- denotes ,
T2318 275-280 NN denotes lines
T2317 270-274 NN denotes cell
T2316 261-269 JJ denotes specific
T2315 258-260 IN denotes in
T2314 248-257 NN denotes silencing
T2313 245-247 CC denotes or
T2312 230-244 NN denotes overexpression
T2311 224-229 VB denotes using
T2310 216-223 NN denotes studies
T2309 210-215 FW denotes vitro
T2308 207-209 FW denotes in
T2307 204-206 IN denotes of
T2306 197-203 NN denotes number
T2305 195-196 DT denotes a
T2304 192-194 TO denotes to
T2303 184-191 VB denotes limited
T2302 180-183 CC denotes and
T2301 170-179 VB denotes described
T2300 165-169 RB denotes well
T2299 160-164 RB denotes less
T2298 157-159 VB denotes is
T2297 147-156 NN denotes responses
T2296 140-146 JJ denotes immune
T2295 130-139 JJ denotes antiviral
T2294 127-129 IN denotes of
T2293 116-126 NN denotes regulation
T2292 112-115 DT denotes the
T2291 109-111 IN denotes in
T2290 105-108 NN denotes A20
T2289 102-104 IN denotes of
T2288 97-101 NN denotes role
T2287 93-96 DT denotes the
T2286 91-92 -COMMA- denotes ,
T2285 82-91 NN denotes responses
T2284 66-81 JJ denotes proinflammatory
T2283 63-65 IN denotes of
T2282 52-62 NN denotes regulation
T2281 48-51 DT denotes the
T2280 45-47 IN denotes in
T2279 36-44 NN denotes function
T2278 24-35 VB denotes established
T2277 19-23 RB denotes well
T2276 15-18 PRP-DOLLAR- denotes its
T2275 12-14 TO denotes to
T2274 3-11 NN denotes contrast
T2273 0-2 IN denotes In
R1486 T2273 T2275 arg1Of In,to
R1488 T2274 T2273 arg2Of contrast,In
R1490 T2278 T2277 arg1Of established,well
R1492 T2279 T2273 arg3Of function,In
R1493 T2279 T2276 arg1Of function,its
R1494 T2279 T2278 arg1Of function,established
R1495 T2279 T2280 arg1Of function,in
R1497 T2282 T2280 arg2Of regulation,in
R1498 T2282 T2281 arg1Of regulation,the
R1499 T2282 T2283 arg1Of regulation,of
R1501 T2285 T2283 arg2Of responses,of
R1502 T2285 T2284 arg1Of responses,proinflammatory
R1503 T2288 T2287 arg1Of role,the
R1504 T2288 T2289 arg1Of role,of
R1505 T2288 T2291 arg1Of role,in
R1506 T2288 T2298 arg1Of role,is
R1507 T2288 T2301 arg2Of role,described
R1508 T2288 T2303 arg2Of role,limited
R1509 T2290 T2289 arg2Of A20,of
R1513 T2293 T2291 arg2Of regulation,in
R1514 T2293 T2292 arg1Of regulation,the
R1515 T2293 T2294 arg1Of regulation,of
R1517 T2297 T2294 arg2Of responses,of
R1518 T2297 T2295 arg1Of responses,antiviral
R1519 T2297 T2296 arg1Of responses,immune
R1522 T2300 T2299 arg1Of well,less
R1524 T2301 T2302 arg1Of described,and
R1525 T2302 T2273 arg1Of and,In
R1526 T2302 T2286 arg1Of and,","
R1527 T2302 T2298 arg2Of and,is
R1528 T2302 T2300 arg1Of and,well
R1529 T2303 T2302 arg2Of limited,and
R1530 T2303 T2304 arg1Of limited,to
R1531 T2306 T2304 arg2Of number,to
R1532 T2306 T2305 arg1Of number,a
R1533 T2306 T2307 arg1Of number,of
R1534 T2309 T2308 arg1Of vitro,in
R1535 T2310 T2307 arg2Of studies,of
R1536 T2310 T2309 arg1Of studies,vitro
R1537 T2310 T2311 arg1Of studies,using
R1538 T2311 T2319 arg1Of using,","
R1539 T2311 T2320 modOf using,indicating
R1541 T2312 T2313 arg1Of overexpression,or
R1542 T2313 T2311 arg2Of or,using
R1543 T2313 T2315 arg1Of or,in
R1545 T2314 T2313 arg2Of silencing,or
R1547 T2318 T2315 arg2Of lines,in
R1548 T2318 T2316 arg1Of lines,specific
R1549 T2318 T2317 arg1Of lines,cell
R1551 T2322 T2323 arg1Of A20,may
R1554 T2322 T2324 arg1Of A20,regulate
R1556 T2324 T2320 arg2Of regulate,indicating
R1557 T2324 T2321 arg1Of regulate,that
R1558 T2324 T2323 arg2Of regulate,may
R1559 T2325 T2326 arg1Of RIG-I-,and
R1561 T2326 T2329 arg1Of and,to
R1562 T2326 T2331 arg1Of and,and
R1564 T2328 T2326 arg2Of signaling,and
R1565 T2328 T2327 arg1Of signaling,TLR3-induced
R1566 T2330 T2329 arg2Of NF-κB,to
R1567 T2331 T2324 arg2Of and,regulate
R1570 T2334 T2333 arg2Of 49,[
R1572 T2335 T2333 arg3Of ],[
R1573 T2336 T2331 arg2Of –,and
R1574 T2336 T2332 arg1Of –,IRF-3
R1575 T2336 T2333 arg1Of –,[
R1576 T2336 T2337 arg1Of –,[
R1577 T2338 T2337 arg2Of 52,[
R1578 T2339 T2337 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1085 362-367 Protein denotes IRF-3
T1084 326-330 Protein denotes TLR3
T1083 315-320 Protein denotes RIG-I

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3677 298-301 http://www.uniprot.org/uniprot/P21580 denotes A20
T3676 105-108 http://www.uniprot.org/uniprot/P21580 denotes A20
T3663 326-330 http://www.uniprot.org/uniprot/O15455 denotes TLR3
T3657 362-367 http://www.uniprot.org/uniprot/Q14653 denotes IRF-3

GO-BP

Id Subject Object Predicate Lexical cue
T1153 116-126 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T1152 52-62 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T1095 339-348 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

GO-CC

Id Subject Object Predicate Lexical cue
T1211 270-274 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T940 0-378 Sentence denotes In contrast to its well established function in the regulation of proinflammatory responses, the role of A20 in the regulation of antiviral immune responses is less well described and limited to a number of in vitro studies using overexpression or silencing in specific cell lines, indicating that A20 may regulate RIG-I- and TLR3-induced signaling to NF-κB and IRF-3 [49]–[52].
T51 0-378 Sentence denotes In contrast to its well established function in the regulation of proinflammatory responses, the role of A20 in the regulation of antiviral immune responses is less well described and limited to a number of in vitro studies using overexpression or silencing in specific cell lines, indicating that A20 may regulate RIG-I- and TLR3-induced signaling to NF-κB and IRF-3 [49]–[52].

simple1

Id Subject Object Predicate Lexical cue
T1338 362-367 Protein denotes IRF-3
T1337 326-330 Protein denotes TLR3
T1336 315-320 Protein denotes RIG-I

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4149 362-367 Protein denotes IRF-3
T4148 326-330 Protein denotes TLR3
T4147 315-320 Protein denotes RIG-I

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T3738 362-367 Protein denotes IRF-3
T3737 326-330 Protein denotes TLR3
T3736 315-320 Protein denotes RIG-I

DLUT931

Id Subject Object Predicate Lexical cue
T3821 306-314 Regulation denotes regulate
T3806 362-367 Protein denotes IRF-3
T3805 326-330 Protein denotes TLR3
T3804 315-320 Protein denotes RIG-I
R2970 T3804 T3821 themeOf RIG-I,regulate
R2972 T3806 T3821 causeOf IRF-3,regulate

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4301 298-301 Protein denotes A20
T4290 315-321 Protein denotes RIG-I-
T4269 362-367 Protein denotes IRF-3
T4256 102-108 Protein denotes of A20
T4247 127-156 Entity denotes of antiviral immune responses
T4222 326-338 Protein denotes TLR3-induced
T4202 352-357 Protein denotes NF-κB

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3490 320-321 : denotes -
T3489 315-320 NNP denotes RIG-I
T3488 306-314 VB denotes regulate
T3487 302-305 MD denotes may
T3486 298-301 NNP denotes A20
T3485 293-297 IN denotes that
T3484 282-292 VBG denotes indicating
T3483 280-281 , denotes ,
T3482 275-280 NNS denotes lines
T3481 270-274 NN denotes cell
T3480 261-269 JJ denotes specific
T3479 258-260 IN denotes in
T3478 248-257 VBG denotes silencing
T3477 245-247 CC denotes or
T3476 230-244 NN denotes overexpression
T3475 224-229 VBG denotes using
T3474 216-223 NNS denotes studies
T3473 210-215 NN denotes vitro
T3472 207-209 IN denotes in
T3471 204-206 IN denotes of
T3470 197-203 NN denotes number
T3469 195-196 DT denotes a
T3468 192-194 TO denotes to
T3467 184-191 VBN denotes limited
T3466 180-183 CC denotes and
T3465 170-179 VBN denotes described
T3464 165-169 RB denotes well
T3463 160-164 RBR denotes less
T3462 157-159 VBZ denotes is
T3461 147-156 NNS denotes responses
T3460 140-146 JJ denotes immune
T3459 130-139 JJ denotes antiviral
T3458 127-129 IN denotes of
T3457 116-126 NN denotes regulation
T3456 112-115 DT denotes the
T3455 109-111 IN denotes in
T3454 105-108 NNP denotes A20
T3453 102-104 IN denotes of
T3452 97-101 NN denotes role
T3451 93-96 DT denotes the
T3450 91-92 , denotes ,
T3449 82-91 NNS denotes responses
T3448 66-81 JJ denotes proinflammatory
T3447 63-65 IN denotes of
T3446 52-62 NN denotes regulation
T3445 48-51 DT denotes the
T3444 45-47 IN denotes in
T3443 36-44 NN denotes function
T3442 24-35 VBN denotes established
T3441 19-23 RB denotes well
T3440 15-18 PRP$ denotes its
T3439 12-14 TO denotes to
T3438 3-11 NN denotes contrast
T3437 0-2 IN denotes In
T3504 377-378 . denotes .
T3503 376-377 NNP denotes ]
T3502 374-376 CD denotes 52
T3501 373-374 NNP denotes [
T3500 371-372 NNP denotes ]
T3499 369-371 CD denotes 49
T3498 368-369 NNP denotes [
T3497 362-367 NNP denotes IRF-3
T3496 358-361 CC denotes and
T3495 352-357 NNP denotes NF-κB
T3494 349-351 TO denotes to
T3493 339-348 VBG denotes signaling
T3492 326-338 JJ denotes TLR3-induced
T3491 322-325 CC denotes and
R2713 T3437 T3462 prep In,is
R2717 T3438 T3437 pobj contrast,In
R2721 T3439 T3438 prep to,contrast
R2723 T3440 T3443 poss its,function
R2724 T3441 T3442 advmod well,established
R2725 T3442 T3443 amod established,function
R2727 T3443 T3439 pobj function,to
R2731 T3444 T3443 prep in,function
R2734 T3445 T3446 det the,regulation
R2740 T3446 T3444 pobj regulation,in
R2745 T3447 T3446 prep of,regulation
R2749 T3448 T3449 amod proinflammatory,responses
R2752 T3449 T3447 pobj responses,of
R2756 T3450 T3443 punct ",",function
R2760 T3451 T3452 det the,role
R2765 T3452 T3462 nsubj role,is
R2769 T3453 T3452 prep of,role
R2772 T3454 T3453 pobj A20,of
R2776 T3455 T3452 prep in,role
R2781 T3456 T3457 det the,regulation
R2785 T3457 T3455 pobj regulation,in
R2792 T3458 T3457 prep of,regulation
R2797 T3459 T3461 amod antiviral,responses
R2800 T3460 T3461 amod immune,responses
R2804 T3461 T3458 pobj responses,of
R2808 T3462 T3462 ROOT is,is
R2809 T3463 T3465 advmod less,described
R2812 T3464 T3465 advmod well,described
R2816 T3465 T3462 acomp described,is
R2820 T3466 T3465 cc and,described
R2823 T3467 T3465 conj limited,described
R2827 T3468 T3467 prep to,limited
R2830 T3469 T3470 det a,number
R2835 T3470 T3468 pobj number,to
R2842 T3471 T3470 prep of,number
R2846 T3472 T3470 prep in,number
R2850 T3473 T3474 amod vitro,studies
R2853 T3474 T3472 pobj studies,in
R2855 T3475 T3467 advcl using,limited
R2856 T3476 T3475 dobj overexpression,using
R2859 T3477 T3475 cc or,using
R2863 T3478 T3475 conj silencing,using
R2867 T3479 T3478 prep in,silencing
R2871 T3480 T3482 amod specific,lines
R2874 T3481 T3482 compound cell,lines
R2878 T3482 T3479 pobj lines,in
R2881 T3483 T3462 punct ",",is
R2885 T3484 T3462 advcl indicating,is
R2892 T3485 T3488 mark that,regulate
R2896 T3486 T3488 nsubj A20,regulate
R2899 T3487 T3488 aux may,regulate
R2903 T3488 T3484 ccomp regulate,indicating
R2904 T3489 T3488 dobj RIG-I,regulate
R2905 T3490 T3489 punct -,RIG-I
R2906 T3491 T3489 cc and,RIG-I
R2907 T3492 T3493 amod TLR3-induced,signaling
R2908 T3493 T3488 dobj signaling,regulate
R2909 T3494 T3501 prep to,[
R2910 T3495 T3494 pobj NF-κB,to
R2911 T3496 T3495 cc and,NF-κB
R2912 T3497 T3498 compound IRF-3,[
R2913 T3498 T3495 conj [,NF-κB
R2914 T3499 T3500 nummod 49,]
R2915 T3500 T3501 nmod ],[
R2916 T3501 T3488 xcomp [,regulate
R2917 T3502 T3503 nummod 52,]
R2918 T3503 T3501 dobj ],[
R2919 T3504 T3462 punct .,is

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T3985 362-367 Protein denotes IRF-3
T3984 352-357 Protein denotes NF-κB
T3983 326-330 Protein denotes TLR3
T3982 298-301 Protein denotes A20
T3981 105-108 Protein denotes A20

testone

Id Subject Object Predicate Lexical cue
T771 362-367 Protein denotes IRF-3
T770 326-330 Protein denotes TLR3
T769 315-320 Protein denotes RIG-I