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PMC:3291650 / 6519-6677 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T889 83-86 Protein denotes RLR
T888 74-82 Regulation denotes regulate
T887 11-15 Protein denotes CYLD
T886 0-4 Protein denotes DUBA
T824 83-86 Protein denotes RLR
T823 11-15 Protein denotes CYLD
T822 0-4 Protein denotes DUBA

2_test

Id Subject Object Predicate Lexical cue
22396652-17991829-98461828 6-8 17991829 denotes 28
22396652-18467330-98461829 17-19 18467330 denotes 29
22396652-18636086-98461830 23-25 18636086 denotes 30
22396652-19996094-98461831 40-42 19996094 denotes 31

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1999 23-25 CD denotes 30
T2020 154-158 IN denotes from
T2019 147-153 NN denotes chains
T2018 133-146 NN denotes polyubiquitin
T2017 122-132 JJ denotes K63-linked
T2016 113-121 VB denotes removing
T2015 100-112 RB denotes specifically
T2014 97-99 IN denotes by
T2013 87-96 NN denotes signaling
T2012 83-86 NN denotes RLR
T2011 74-82 VB denotes regulate
T2010 63-73 RB denotes negatively
T2009 60-62 TO denotes to
T2008 54-59 VB denotes shown
T2007 49-53 VB denotes been
T2006 44-48 VB denotes have
T2005 42-43 -RRB- denotes ]
T2004 40-42 CD denotes 31
T2003 39-40 -LRB- denotes [
T2002 31-38 NN denotes OTUB1/2
T2001 27-30 CC denotes and
T2000 25-26 -RRB- denotes ]
T1998 22-23 -LRB- denotes [
T1997 20-21 -COMMA- denotes ,
T1996 19-20 -RRB- denotes ]
T1995 17-19 CD denotes 29
T1994 16-17 -LRB- denotes [
T1993 11-15 NN denotes CYLD
T1992 9-10 -COMMA- denotes ,
T1991 8-9 -RRB- denotes ]
T1990 6-8 CD denotes 28
T1989 5-6 -LRB- denotes [
T1988 0-4 NNP denotes DUBA
R1222 T1988 T1989 arg1Of DUBA,[
R1223 T1988 T1992 arg1Of DUBA,","
R1224 T1990 T1989 arg2Of 28,[
R1225 T1991 T1989 arg3Of ],[
R1227 T1993 T1992 arg2Of CYLD,","
R1228 T1993 T1994 arg1Of CYLD,[
R1229 T1995 T1994 arg2Of 29,[
R1231 T1996 T1994 arg3Of ],[
R1233 T1999 T1998 arg2Of 30,[
R1234 T2000 T1998 arg3Of ],[
R1235 T2001 T2006 arg1Of and,have
R1236 T2001 T2007 arg1Of and,been
R1237 T2001 T2008 arg2Of and,shown
R1238 T2001 T2011 arg1Of and,regulate
R1239 T2002 T2001 arg2Of OTUB1/2,and
R1240 T2002 T2003 arg1Of OTUB1/2,[
R1241 T2004 T2003 arg2Of 31,[
R1243 T2005 T2003 arg3Of ],[
R1249 T2008 T2006 arg2Of shown,have
R1251 T2008 T2007 arg2Of shown,been
R1254 T2011 T2008 arg3Of regulate,shown
R1255 T2011 T2009 arg1Of regulate,to
R1256 T2011 T2010 arg1Of regulate,negatively
R1257 T2011 T2014 arg1Of regulate,by
R1258 T2013 T2011 arg2Of signaling,regulate
R1259 T2013 T2012 arg1Of signaling,RLR
R1263 T2016 T2014 arg2Of removing,by
R1264 T2016 T2015 arg1Of removing,specifically
R1265 T2016 T2020 arg1Of removing,from
R1267 T2019 T2016 arg2Of chains,removing
R1268 T2019 T2017 arg1Of chains,K63-linked
R1269 T2019 T2018 arg1Of chains,polyubiquitin

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1070 83-86 Protein denotes RLR
T1069 11-15 Protein denotes CYLD
T1068 0-4 Protein denotes DUBA

GO-BP

Id Subject Object Predicate Lexical cue
T1127 133-146 http://purl.obolibrary.org/obo/GO_0000209 denotes polyubiquitin
T1091 87-96 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

simple1

Id Subject Object Predicate Lexical cue
T1323 83-86 Protein denotes RLR
T1322 11-15 Protein denotes CYLD
T1321 0-4 Protein denotes DUBA

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4134 83-86 Protein denotes RLR
T4133 11-15 Protein denotes CYLD
T4132 0-4 Protein denotes DUBA

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T3723 83-86 Protein denotes RLR
T3722 11-15 Protein denotes CYLD
T3721 0-4 Protein denotes DUBA

DLUT931

Id Subject Object Predicate Lexical cue
T3818 74-82 Negative_regulation denotes regulate
T3791 83-86 Protein denotes RLR
T3790 11-15 Protein denotes CYLD
T3789 0-4 Protein denotes DUBA
R2962 T3789 T3818 causeOf DUBA,regulate
R2963 T3791 T3818 themeOf RLR,regulate

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4358 83-96 Positive_regulation denotes RLR signaling
T4357 0-158 Regulation denotes DUBA [28], CYLD [29], [30] and OTUB1/2 [31] have been shown to negatively regulate RLR signaling by specifically removing K63-linked polyubiquitin chains from
T4340 11-26 Protein denotes CYLD [29], [30]
T4332 0-9 Protein denotes DUBA [28]
T4285 122-132 Entity denotes K63-linked
T4283 133-146 Protein denotes polyubiquitin
T4263 83-86 Protein denotes RLR
T4205 31-43 Protein denotes OTUB1/2 [31]
R3111 T4263 T4358 causeOf RLR,RLR signaling
R3112 T4358 T4357 themeOf RLR signaling,"DUBA [28], CYLD [29], [30] and OTUB1/2 [31] have been shown to negatively regulate RLR signaling by specifically removing K63-linked polyubiquitin chains from"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3177 154-158 IN denotes from
T3176 147-153 NNS denotes chains
T3175 133-146 NN denotes polyubiquitin
T3174 122-132 JJ denotes K63-linked
T3173 113-121 VBG denotes removing
T3172 100-112 RB denotes specifically
T3171 97-99 IN denotes by
T3170 87-96 VBG denotes signaling
T3169 83-86 NNP denotes RLR
T3168 74-82 VB denotes regulate
T3167 63-73 RB denotes negatively
T3166 60-62 TO denotes to
T3165 54-59 VBN denotes shown
T3164 49-53 VBN denotes been
T3163 44-48 VBP denotes have
T3162 42-43 NNP denotes ]
T3161 40-42 CD denotes 31
T3160 39-40 NNP denotes [
T3159 31-38 NNP denotes OTUB1/2
T3158 27-30 CC denotes and
T3157 25-26 NNP denotes ]
T3156 23-25 CD denotes 30
T3155 22-23 NNP denotes [
T3154 20-21 , denotes ,
T3153 19-20 NNP denotes ]
T3152 17-19 CD denotes 29
T3151 16-17 NNP denotes [
T3150 11-15 NNP denotes CYLD
T3149 9-10 , denotes ,
T3148 8-9 NNP denotes ]
T3147 6-8 CD denotes 28
T3146 5-6 NNP denotes [
T3145 0-4 NNP denotes DUBA
R2345 T3145 T3146 compound DUBA,[
R2348 T3147 T3148 nummod 28,]
R2350 T3148 T3146 conj ],[
R2351 T3149 T3148 punct ",",]
R2352 T3150 T3151 compound CYLD,[
R2354 T3151 T3148 conj [,]
R2355 T3152 T3153 compound 29,]
R2356 T3153 T3151 conj ],[
R2358 T3154 T3153 punct ",",]
R2359 T3155 T3153 conj [,]
R2360 T3156 T3157 nummod 30,]
R2362 T3157 T3153 conj ],]
R2363 T3158 T3157 cc and,]
R2364 T3159 T3160 compound OTUB1/2,[
R2366 T3160 T3157 conj [,]
R2367 T3161 T3162 nummod 31,]
R2368 T3162 T3157 conj ],]
R2370 T3163 T3165 aux have,shown
R2371 T3164 T3165 auxpass been,shown
R2372 T3165 T3165 ROOT shown,shown
R2374 T3166 T3168 aux to,regulate
R2375 T3167 T3168 advmod negatively,regulate
R2377 T3168 T3165 xcomp regulate,shown
R2378 T3169 T3168 dobj RLR,regulate
R2379 T3170 T3165 advcl signaling,shown
R2381 T3171 T3170 prep by,signaling
R2382 T3172 T3173 advmod specifically,removing
R2383 T3173 T3171 pcomp removing,by
R2384 T3174 T3176 amod K63-linked,chains
R2385 T3175 T3176 compound polyubiquitin,chains
R2386 T3176 T3173 dobj chains,removing
R2388 T3177 T3173 prep from,removing

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T3960 133-146 Protein denotes polyubiquitin

testone

Id Subject Object Predicate Lexical cue
T756 83-86 Protein denotes RLR
T755 11-15 Protein denotes CYLD
T754 0-4 Protein denotes DUBA