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PMC:3291650 / 6163-6297 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T880 117-122 Protein denotes RIG-I
T879 62-68 Protein denotes Riplet
T878 46-52 Protein denotes TRIM25
T817 117-122 Protein denotes RIG-I
T816 62-68 Protein denotes Riplet
T815 46-52 Protein denotes TRIM25

2_test

Id Subject Object Predicate Lexical cue
22396652-17392790-98461822 54-56 17392790 denotes 22
22396652-19484123-98461823 70-72 19484123 denotes 23
22396652-21147464-98461824 76-78 21147464 denotes 24

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1943 123-133 NN denotes activation
T1942 117-122 NN denotes RIG-I
T1941 109-116 VB denotes promote
T1940 100-108 RB denotes directly
T1939 97-99 TO denotes to
T1938 91-96 VB denotes shown
T1937 86-90 VB denotes been
T1936 81-85 VB denotes have
T1935 79-80 -COMMA- denotes ,
T1920 38-42 JJ denotes such
T1919 36-37 -COMMA- denotes ,
T1918 35-36 -RRB- denotes )
T1917 32-35 NN denotes E3s
T1916 31-32 -LRB- denotes (
T1915 23-30 NN denotes ligases
T1914 13-22 NN denotes ubiquitin
T1913 0-12 JJ denotes K63-specific
T1934 78-79 -RRB- denotes ]
T1933 76-78 CD denotes 24
T1932 75-76 -LRB- denotes [
T1931 73-74 -COMMA- denotes ,
T1930 72-73 -RRB- denotes ]
T1929 70-72 CD denotes 23
T1928 69-70 -LRB- denotes [
T1927 62-68 NNP denotes Riplet
T1926 58-61 CC denotes and
T1925 56-57 -RRB- denotes ]
T1924 54-56 CD denotes 22
T1923 53-54 -LRB- denotes [
T1922 46-52 NN denotes TRIM25
T1921 43-45 IN denotes as
R1232 T1915 T1913 arg1Of ligases,K63-specific
R1242 T1915 T1914 arg1Of ligases,ubiquitin
R1244 T1915 T1916 arg1Of ligases,(
R1245 T1915 T1919 arg1Of ligases,","
R1246 T1915 T1921 arg1Of ligases,as
R1250 T1915 T1931 arg1Of ligases,","
R1252 T1915 T1932 arg1Of ligases,[
R1253 T1915 T1936 arg1Of ligases,have
R1260 T1915 T1937 arg1Of ligases,been
R1261 T1915 T1938 arg2Of ligases,shown
R1262 T1915 T1941 arg1Of ligases,promote
R1266 T1917 T1916 arg2Of E3s,(
R1270 T1918 T1916 arg3Of ),(
R1274 T1921 T1920 arg1Of as,such
R1282 T1922 T1923 arg1Of TRIM25,[
R1286 T1922 T1926 arg1Of TRIM25,and
R1287 T1924 T1923 arg2Of 22,[
R1291 T1925 T1923 arg3Of ],[
R1293 T1926 T1921 arg2Of and,as
R1298 T1927 T1926 arg2Of Riplet,and
R1299 T1927 T1928 arg1Of Riplet,[
R1300 T1929 T1928 arg2Of 23,[
R1301 T1930 T1928 arg3Of ],[
R1306 T1933 T1932 arg2Of 24,[
R1311 T1934 T1932 arg3Of ],[
R1315 T1938 T1935 arg1Of shown,","
R1324 T1938 T1936 arg2Of shown,have
R1328 T1938 T1937 arg2Of shown,been
R1330 T1941 T1938 arg3Of promote,shown
R1339 T1941 T1939 arg1Of promote,to
R1341 T1941 T1940 arg1Of promote,directly
R1344 T1943 T1941 arg2Of activation,promote
R1348 T1943 T1942 arg1Of activation,RIG-I

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1063 117-122 Protein denotes RIG-I
T1062 62-68 Protein denotes Riplet
T1061 46-52 Protein denotes TRIM25

GO-MF

Id Subject Object Predicate Lexical cue
T1176 13-22 http://purl.obolibrary.org/obo/GO_0031386 denotes ubiquitin

sentences

Id Subject Object Predicate Lexical cue
T929 0-134 Sentence denotes K63-specific ubiquitin ligases (E3s), such as TRIM25 [22] and Riplet [23], [24], have been shown to directly promote RIG-I activation.
T40 0-134 Sentence denotes K63-specific ubiquitin ligases (E3s), such as TRIM25 [22] and Riplet [23], [24], have been shown to directly promote RIG-I activation.

simple1

Id Subject Object Predicate Lexical cue
T1316 117-122 Protein denotes RIG-I
T1315 62-68 Protein denotes Riplet
T1314 46-52 Protein denotes TRIM25

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4157 123-133 Positive_regulation denotes activation
T4156 109-116 Positive_regulation denotes promote
T4127 117-122 Protein denotes RIG-I
T4126 62-68 Protein denotes Riplet
T4125 46-52 Protein denotes TRIM25
R3075 T4127 T4157 themeOf RIG-I,activation
R3097 T4157 T4156 themeOf activation,promote

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T3746 109-116 Positive_regulation denotes promote
T3745 123-133 Positive_regulation denotes activation
T3716 117-122 Protein denotes RIG-I
T3715 62-68 Protein denotes Riplet
T3714 46-52 Protein denotes TRIM25
R2952 T3716 T3745 themeOf RIG-I,activation
R2990 T3745 T3746 themeOf activation,promote

DLUT931

Id Subject Object Predicate Lexical cue
T3815 123-133 Positive_regulation denotes activation
T3784 117-122 Protein denotes RIG-I
T3783 62-68 Protein denotes Riplet
T3782 46-52 Protein denotes TRIM25
R2957 T3784 T3815 themeOf RIG-I,activation

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4346 117-133 Positive_regulation denotes RIG-I activation
T4287 0-12 Entity denotes K63-specific
T4243 117-122 Protein denotes RIG-I
T4236 46-57 Protein denotes TRIM25 [22]
T4230 13-22 Protein denotes ubiquitin
T4162 0-30 Protein denotes K63-specific ubiquitin ligases
T4187 62-68 Protein denotes Riplet
R3107 T4243 T4346 themeOf RIG-I,RIG-I activation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3099 133-134 . denotes .
T3098 123-133 NN denotes activation
T3097 117-122 NNP denotes RIG-I
T3096 109-116 VB denotes promote
T3095 100-108 RB denotes directly
T3094 97-99 TO denotes to
T3093 91-96 VBN denotes shown
T3092 86-90 VBN denotes been
T3091 81-85 VBP denotes have
T3090 79-80 , denotes ,
T3089 78-79 NNP denotes ]
T3088 76-78 CD denotes 24
T3087 75-76 NNP denotes [
T3086 73-74 , denotes ,
T3085 72-73 NNP denotes ]
T3084 70-72 CD denotes 23
T3083 69-70 NNP denotes [
T3082 62-68 NNP denotes Riplet
T3081 58-61 CC denotes and
T3080 56-57 NNP denotes ]
T3079 54-56 CD denotes 22
T3078 53-54 NNP denotes [
T3077 46-52 CD denotes TRIM25
T3076 43-45 IN denotes as
T3075 38-42 JJ denotes such
T3074 36-37 , denotes ,
T3073 35-36 -RRB- denotes )
T3072 32-35 NNS denotes E3s
T3071 31-32 -LRB- denotes (
T3070 23-30 NNS denotes ligases
T3069 13-22 NN denotes ubiquitin
T3068 0-12 JJ denotes K63-specific
R2435 T3068 T3070 nmod K63-specific,ligases
R2440 T3069 T3070 compound ubiquitin,ligases
R2444 T3070 T3093 nsubjpass ligases,shown
R2448 T3071 T3072 punct (,E3s
R2452 T3072 T3070 appos E3s,ligases
R2453 T3073 T3070 punct ),ligases
R2454 T3074 T3070 punct ",",ligases
R2456 T3075 T3076 amod such,as
R2459 T3076 T3070 prep as,ligases
R2463 T3077 T3080 nummod TRIM25,]
R2467 T3078 T3080 nmod [,]
R2470 T3079 T3080 nummod 22,]
R2474 T3080 T3076 pobj ],as
R2477 T3081 T3080 cc and,]
R2481 T3082 T3083 compound Riplet,[
R2488 T3083 T3080 conj [,]
R2492 T3084 T3085 nummod 23,]
R2495 T3085 T3083 conj ],[
R2500 T3086 T3085 punct ",",]
R2503 T3087 T3089 nmod [,]
R2504 T3088 T3089 nummod 24,]
R2507 T3089 T3085 conj ],]
R2511 T3090 T3093 punct ",",shown
R2515 T3091 T3093 aux have,shown
R2517 T3092 T3093 auxpass been,shown
R2521 T3093 T3093 ROOT shown,shown
R2525 T3094 T3096 aux to,promote
R2529 T3095 T3096 advmod directly,promote
R2533 T3096 T3093 xcomp promote,shown
R2540 T3097 T3098 compound RIG-I,activation
R2544 T3098 T3096 dobj activation,promote
R2547 T3099 T3093 punct .,shown

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T3946 0-30 Protein denotes K63-specific ubiquitin ligases
T3951 123-133 Positive_regulation denotes activation
T3950 109-116 Gene_expression denotes promote
T3949 109-116 Gene_expression denotes promote
T3948 117-122 Protein denotes RIG-I
T3947 32-35 Protein denotes E3s
R3022 T3946 T3949 themeOf K63-specific ubiquitin ligases,promote
R3023 T3947 T3950 themeOf E3s,promote
R3025 T3948 T3951 themeOf RIG-I,activation

testone

Id Subject Object Predicate Lexical cue
T749 117-122 Protein denotes RIG-I
T748 62-68 Protein denotes Riplet
T747 46-52 Protein denotes TRIM25