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PMC:3291650 / 4366-5580 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T865 969-978 Negative_regulation denotes deficient
T864 964-968 Protein denotes TLR3
T863 899-908 Negative_regulation denotes deficient
T862 893-898 Protein denotes RIG-I
T861 847-852 Protein denotes RIG-I
T860 637-642 Protein denotes RIG-I
T859 628-632 Protein denotes TLR3
T806 964-968 Protein denotes TLR3
T805 893-898 Protein denotes RIG-I
T804 847-852 Protein denotes RIG-I
T803 637-642 Protein denotes RIG-I
T802 628-632 Protein denotes TLR3
R532 T862 T863 themeOf RIG-I,deficient
R533 T864 T865 themeOf TLR3,deficient

2_test

Id Subject Object Predicate Lexical cue
22396652-20144762-98461814 693-695 20144762 denotes 10
22396652-20805493-98461815 698-700 20805493 denotes 12
22396652-17942531-98461816 873-875 17942531 denotes 13
22396652-16625202-98461817 945-947 16625202 denotes 14
22396652-16714379-98461818 951-953 16714379 denotes 15
22396652-16789835-98461819 1030-1032 16789835 denotes 16

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1813 1204-1213 NN denotes influenza
T1812 1201-1203 IN denotes of
T1811 1188-1200 NN denotes pathogenesis
T1810 1184-1187 DT denotes the
T1809 1181-1183 TO denotes to
T1808 1170-1180 VB denotes contribute
T1807 1167-1169 TO denotes to
T1806 1160-1166 JJ denotes likely
T1805 1157-1159 VB denotes is
T1804 1151-1156 NN denotes cells
T1803 1144-1150 JJ denotes immune
T1802 1141-1143 IN denotes by
T1801 1132-1140 VB denotes released
T1800 1122-1131 NN denotes mediators
T1799 1119-1121 IN denotes of
T1798 1111-1118 NN denotes effects
T1797 1103-1110 JJ denotes harmful
T1796 1099-1102 CC denotes and
T1795 1088-1098 JJ denotes beneficial
T1794 1084-1087 DT denotes the
T1793 1076-1083 IN denotes between
T1792 1066-1075 NN denotes imbalance
T1791 1063-1065 DT denotes an
T1790 1058-1062 IN denotes that
T1789 1049-1057 VB denotes indicate
T1788 1041-1048 NN denotes results
T1787 1035-1040 DT denotes These
T1786 1032-1033 -RRB- denotes ]
T1785 1030-1032 CD denotes 16
T1784 1029-1030 -LRB- denotes [
T1783 1019-1028 NN denotes infection
T1782 1013-1018 JJ denotes acute
T1781 1010-1012 TO denotes to
T1780 1000-1009 NN denotes advantage
T1779 991-999 NN denotes survival
T1778 989-990 DT denotes a
T1777 984-988 VB denotes have
T1776 979-983 NN denotes mice
T1775 969-978 JJ denotes deficient
T1774 964-968 NN denotes TLR3
T1773 956-963 IN denotes whereas
T1772 954-955 -COMMA- denotes ,
T1771 953-954 -RRB- denotes ]
T1770 951-953 CD denotes 15
T1769 950-951 -LRB- denotes [
T1768 948-949 -COMMA- denotes ,
T1767 947-948 -RRB- denotes ]
T1766 945-947 CD denotes 14
T1765 944-945 -LRB- denotes [
T1764 940-943 NN denotes IAV
T1763 937-939 TO denotes to
T1762 925-936 JJ denotes susceptible
T1761 918-924 RB denotes highly
T1760 914-917 VB denotes are
T1759 909-913 NN denotes mice
T1758 899-908 JJ denotes deficient
T1757 893-898 NN denotes RIG-I
T1756 891-892 -COMMA- denotes ,
T1755 878-891 RB denotes Interestingly
T1754 875-876 -RRB- denotes ]
T1753 873-875 CD denotes 13
T1752 872-873 -LRB- denotes [
T1751 862-871 NN denotes signaling
T1750 853-861 VB denotes mediated
T1749 847-852 NN denotes RIG-I
T1748 844-846 IN denotes on
T1747 836-843 VB denotes depends
T1746 828-835 RB denotes largely
T1745 819-827 NN denotes response
T1744 812-818 JJ denotes immune
T1743 802-811 JJ denotes antiviral
T1742 795-801 JJ denotes innate
T1741 791-794 DT denotes the
T1740 788-790 IN denotes of
T1739 777-787 NN denotes initiation
T1738 773-776 DT denotes the
T1737 769-772 CC denotes but
T1736 767-768 -COMMA- denotes ,
T1735 764-767 NN denotes IAV
T1734 761-763 TO denotes to
T1733 752-760 NN denotes response
T1732 736-751 JJ denotes proinflammatory
T1731 732-735 DT denotes the
T1730 729-731 TO denotes to
T1729 718-728 VB denotes contribute
T1728 708-717 NN denotes receptors
T1727 703-707 DT denotes Both
T1726 700-701 -RRB- denotes ]
T1725 698-700 CD denotes 12
T1724 697-698 -LRB- denotes [
T1723 696-697 CD denotes –
T1722 695-696 -RRB- denotes ]
T1721 693-695 CD denotes 10
T1720 692-693 -LRB- denotes [
T1719 682-691 NN denotes infection
T1718 678-681 NN denotes IAV
T1717 675-677 IN denotes of
T1716 667-674 NN denotes sensors
T1715 664-666 IN denotes as
T1714 653-663 VB denotes implicated
T1713 648-652 VB denotes been
T1712 643-647 VB denotes have
T1711 637-642 NN denotes RIG-I
T1710 633-636 CC denotes and
T1709 628-632 NN denotes TLR3
T1708 615-626 NN denotes replication
T1707 609-614 JJ denotes viral
T1706 606-608 IN denotes of
T1705 593-605 NN denotes intermediate
T1704 590-592 DT denotes an
T1703 584-589 VB denotes being
T1702 577-583 JJ denotes latter
T1701 573-576 DT denotes the
T1700 571-572 -COMMA- denotes ,
T1699 568-571 NN denotes RNA
T1698 559-567 JJ denotes stranded
T1697 552-558 JJ denotes double
T1696 548-551 CC denotes and
T1695 544-547 NN denotes RNA
T1694 536-543 JJ denotes genomic
T1693 520-535 JJ denotes single-stranded
T1692 517-519 IN denotes of
T1691 512-516 NN denotes cell
T1690 507-511 NN denotes host
T1689 503-506 DT denotes the
T1688 500-502 IN denotes in
T1687 491-499 NN denotes exposure
T1686 487-490 DT denotes the
T1685 484-486 TO denotes to
T1684 478-483 VB denotes leads
T1683 468-477 NN denotes infection
T1682 464-467 NN denotes IAV
T1681 454-462 JJ denotes critical
T1680 451-453 VB denotes is
T1679 441-450 NN denotes responses
T1678 434-440 JJ denotes immune
T1677 422-433 JJ denotes IAV-induced
T1676 413-421 VB denotes regulate
T1675 408-412 WDT denotes that
T1674 397-407 NN denotes mechanisms
T1673 393-396 DT denotes the
T1672 390-392 IN denotes of
T1671 376-389 NN denotes understanding
T1670 374-375 -COMMA- denotes ,
T1669 367-374 NN denotes context
T1668 362-366 DT denotes this
T1667 359-361 IN denotes In
T1666 347-357 NN denotes strategies
T1665 337-346 JJ denotes antiviral
T1664 331-336 JJ denotes novel
T1663 320-330 VB denotes developing
T1662 317-319 IN denotes of
T1661 306-316 NN denotes importance
T1660 302-305 DT denotes the
T1659 290-301 VB denotes underscores
T1658 280-289 NN denotes potential
T1657 271-279 JJ denotes pandemic
T1656 266-270 IN denotes with
T1655 258-265 NN denotes viruses
T1654 248-257 NN denotes influenza
T1653 245-247 IN denotes of
T1652 237-244 NN denotes strains
T1651 222-236 JJ denotes drug-resistant
T1650 219-221 IN denotes of
T1649 209-218 NN denotes Emergence
T1648 199-207 NN denotes response
T1647 186-198 JJ denotes inflammatory
T1646 181-185 NN denotes host
T1645 171-180 JJ denotes excessive
T1644 168-170 DT denotes an
T1643 165-167 TO denotes to
T1642 161-164 IN denotes due
T1641 158-160 VB denotes be
T1640 155-157 TO denotes to
T1639 146-154 VB denotes believed
T1638 136-145 RB denotes generally
T1637 133-135 VB denotes is
T1636 127-132 WDT denotes which
T1635 125-126 -COMMA- denotes ,
T1634 116-125 NN denotes mortality
T1633 103-115 JJ denotes considerable
T1632 96-102 VB denotes causes
T1631 91-95 WDT denotes that
T1630 83-90 NN denotes disease
T1629 71-82 JJ denotes respiratory
T1628 65-70 JJ denotes acute
T1627 54-64 JJ denotes contagious
T1626 52-53 DT denotes a
T1625 49-51 IN denotes of
T1624 43-48 NN denotes agent
T1623 31-42 JJ denotes etiological
T1622 27-30 DT denotes the
T1621 24-26 VB denotes is
T1620 22-23 -RRB- denotes )
T1619 19-22 NN denotes IAV
T1618 18-19 -LRB- denotes (
T1617 12-17 NN denotes virus
T1616 10-11 NN denotes A
T1615 0-9 NN denotes Influenza
R882 T1617 T1615 arg1Of virus,Influenza
R883 T1617 T1616 arg1Of virus,A
R884 T1617 T1618 arg1Of virus,(
R885 T1617 T1621 arg1Of virus,is
R886 T1619 T1618 arg2Of IAV,(
R887 T1620 T1618 arg3Of ),(
R888 T1624 T1621 arg2Of agent,is
R889 T1624 T1622 arg1Of agent,the
R890 T1624 T1623 arg1Of agent,etiological
R891 T1624 T1625 arg1Of agent,of
R892 T1630 T1625 arg2Of disease,of
R893 T1630 T1626 arg1Of disease,a
R894 T1630 T1627 arg1Of disease,contagious
R895 T1630 T1628 arg1Of disease,acute
R896 T1630 T1629 arg1Of disease,respiratory
R897 T1630 T1631 arg1Of disease,that
R898 T1630 T1632 arg1Of disease,causes
R899 T1634 T1632 arg2Of mortality,causes
R900 T1634 T1633 arg1Of mortality,considerable
R901 T1634 T1635 arg1Of mortality,","
R902 T1634 T1636 arg1Of mortality,which
R903 T1634 T1637 arg1Of mortality,is
R904 T1634 T1639 arg2Of mortality,believed
R905 T1634 T1641 arg1Of mortality,be
R906 T1634 T1643 arg1Of mortality,to
R907 T1639 T1637 arg2Of believed,is
R908 T1639 T1638 arg1Of believed,generally
R909 T1641 T1639 arg3Of be,believed
R910 T1641 T1640 arg1Of be,to
R911 T1643 T1641 arg2Of to,be
R912 T1643 T1642 arg1Of to,due
R913 T1648 T1643 arg2Of response,to
R914 T1648 T1644 arg1Of response,an
R915 T1648 T1645 arg1Of response,excessive
R916 T1648 T1646 arg1Of response,host
R917 T1648 T1647 arg1Of response,inflammatory
R918 T1649 T1650 arg1Of Emergence,of
R919 T1649 T1659 arg1Of Emergence,underscores
R920 T1652 T1650 arg2Of strains,of
R921 T1652 T1651 arg1Of strains,drug-resistant
R922 T1652 T1653 arg1Of strains,of
R923 T1655 T1653 arg2Of viruses,of
R924 T1655 T1654 arg1Of viruses,influenza
R925 T1655 T1656 arg1Of viruses,with
R926 T1658 T1656 arg2Of potential,with
R927 T1658 T1657 arg1Of potential,pandemic
R928 T1661 T1659 arg2Of importance,underscores
R929 T1661 T1660 arg1Of importance,the
R930 T1661 T1662 arg1Of importance,of
R931 T1666 T1662 arg2Of strategies,of
R932 T1666 T1663 arg1Of strategies,developing
R933 T1666 T1664 arg1Of strategies,novel
R934 T1666 T1665 arg1Of strategies,antiviral
R935 T1669 T1667 arg2Of context,In
R936 T1669 T1668 arg1Of context,this
R937 T1671 T1672 arg1Of understanding,of
R938 T1671 T1680 arg1Of understanding,is
R939 T1671 T1681 arg1Of understanding,critical
R940 T1674 T1672 arg2Of mechanisms,of
R941 T1674 T1673 arg1Of mechanisms,the
R942 T1674 T1675 arg1Of mechanisms,that
R943 T1674 T1676 arg1Of mechanisms,regulate
R944 T1679 T1676 arg2Of responses,regulate
R945 T1679 T1677 arg1Of responses,IAV-induced
R946 T1679 T1678 arg1Of responses,immune
R947 T1680 T1667 arg1Of is,In
R948 T1680 T1670 arg1Of is,","
R949 T1681 T1680 arg2Of critical,is
R950 T1683 T1682 arg1Of infection,IAV
R951 T1683 T1684 arg1Of infection,leads
R952 T1684 T1685 arg1Of leads,to
R953 T1687 T1685 arg2Of exposure,to
R954 T1687 T1686 arg1Of exposure,the
R955 T1687 T1688 arg1Of exposure,in
R956 T1687 T1700 arg1Of exposure,","
R957 T1691 T1688 arg2Of cell,in
R958 T1691 T1689 arg1Of cell,the
R959 T1691 T1690 arg1Of cell,host
R960 T1691 T1692 arg1Of cell,of
R961 T1695 T1693 arg1Of RNA,single-stranded
R962 T1695 T1694 arg1Of RNA,genomic
R963 T1695 T1696 arg1Of RNA,and
R964 T1696 T1692 arg2Of and,of
R965 T1699 T1696 arg2Of RNA,and
R966 T1699 T1697 arg1Of RNA,double
R967 T1699 T1698 arg1Of RNA,stranded
R968 T1702 T1700 arg2Of latter,","
R969 T1702 T1701 arg1Of latter,the
R970 T1703 T1684 arg2Of being,leads
R971 T1705 T1703 arg2Of intermediate,being
R972 T1705 T1704 arg1Of intermediate,an
R973 T1705 T1706 arg1Of intermediate,of
R974 T1708 T1706 arg2Of replication,of
R975 T1708 T1707 arg1Of replication,viral
R976 T1709 T1710 arg1Of TLR3,and
R977 T1710 T1712 arg1Of and,have
R978 T1710 T1713 arg1Of and,been
R979 T1710 T1714 arg2Of and,implicated
R980 T1711 T1710 arg2Of RIG-I,and
R981 T1714 T1712 arg2Of implicated,have
R982 T1714 T1713 arg2Of implicated,been
R983 T1714 T1715 arg1Of implicated,as
R984 T1714 T1720 arg1Of implicated,[
R985 T1716 T1715 arg2Of sensors,as
R986 T1716 T1717 arg1Of sensors,of
R987 T1719 T1717 arg2Of infection,of
R988 T1719 T1718 arg1Of infection,IAV
R989 T1721 T1720 arg2Of 10,[
R990 T1722 T1720 arg3Of ],[
R991 T1723 T1714 arg3Of –,implicated
R992 T1723 T1724 arg1Of –,[
R993 T1725 T1724 arg2Of 12,[
R994 T1726 T1724 arg3Of ],[
R995 T1728 T1727 arg1Of receptors,Both
R996 T1728 T1729 arg1Of receptors,contribute
R997 T1729 T1730 arg1Of contribute,to
R998 T1729 T1737 arg1Of contribute,but
R999 T1733 T1730 arg2Of response,to
R1000 T1733 T1731 arg1Of response,the
R1001 T1733 T1732 arg1Of response,proinflammatory
R1002 T1733 T1734 arg1Of response,to
R1003 T1735 T1734 arg2Of IAV,to
R1004 T1737 T1736 arg1Of but,","
R1005 T1739 T1738 arg1Of initiation,the
R1006 T1739 T1740 arg1Of initiation,of
R1007 T1739 T1747 arg1Of initiation,depends
R1008 T1745 T1740 arg2Of response,of
R1009 T1745 T1741 arg1Of response,the
R1010 T1745 T1742 arg1Of response,innate
R1011 T1745 T1743 arg1Of response,antiviral
R1012 T1745 T1744 arg1Of response,immune
R1013 T1747 T1737 arg2Of depends,but
R1014 T1747 T1746 arg1Of depends,largely
R1015 T1747 T1748 arg1Of depends,on
R1016 T1747 T1752 arg1Of depends,[
R1017 T1751 T1748 arg2Of signaling,on
R1018 T1751 T1749 arg1Of signaling,RIG-I
R1019 T1751 T1750 arg2Of signaling,mediated
R1020 T1753 T1752 arg2Of 13,[
R1021 T1754 T1752 arg3Of ],[
R1022 T1759 T1757 arg1Of mice,RIG-I
R1023 T1759 T1758 arg1Of mice,deficient
R1024 T1759 T1760 arg1Of mice,are
R1025 T1759 T1762 arg1Of mice,susceptible
R1026 T1760 T1755 arg1Of are,Interestingly
R1027 T1760 T1756 arg1Of are,","
R1028 T1760 T1768 arg1Of are,","
R1029 T1760 T1769 arg1Of are,[
R1030 T1760 T1772 arg1Of are,","
R1031 T1760 T1773 arg1Of are,whereas
R1032 T1762 T1760 arg2Of susceptible,are
R1033 T1762 T1761 arg1Of susceptible,highly
R1034 T1762 T1763 arg1Of susceptible,to
R1035 T1764 T1763 arg2Of IAV,to
R1036 T1764 T1765 arg1Of IAV,[
R1037 T1766 T1765 arg2Of 14,[
R1038 T1767 T1765 arg3Of ],[
R1039 T1770 T1769 arg2Of 15,[
R1040 T1771 T1769 arg3Of ],[
R1041 T1776 T1774 arg1Of mice,TLR3
R1042 T1776 T1775 arg1Of mice,deficient
R1043 T1776 T1777 arg1Of mice,have
R1044 T1777 T1773 arg2Of have,whereas
R1045 T1777 T1781 arg1Of have,to
R1046 T1780 T1777 arg2Of advantage,have
R1047 T1780 T1778 arg1Of advantage,a
R1048 T1780 T1779 arg1Of advantage,survival
R1049 T1783 T1781 arg2Of infection,to
R1050 T1783 T1782 arg1Of infection,acute
R1051 T1783 T1784 arg1Of infection,[
R1052 T1785 T1784 arg2Of 16,[
R1053 T1786 T1784 arg3Of ],[
R1054 T1788 T1787 arg1Of results,These
R1055 T1788 T1789 arg1Of results,indicate
R1056 T1792 T1791 arg1Of imbalance,an
R1057 T1792 T1793 arg1Of imbalance,between
R1058 T1792 T1805 arg1Of imbalance,is
R1059 T1792 T1806 arg1Of imbalance,likely
R1060 T1792 T1808 arg1Of imbalance,contribute
R1061 T1795 T1796 arg1Of beneficial,and
R1062 T1797 T1796 arg2Of harmful,and
R1063 T1798 T1793 arg2Of effects,between
R1064 T1798 T1794 arg1Of effects,the
R1065 T1798 T1795 arg1Of effects,beneficial
R1066 T1798 T1797 arg1Of effects,harmful
R1067 T1798 T1799 arg1Of effects,of
R1068 T1800 T1799 arg2Of mediators,of
R1069 T1800 T1801 arg2Of mediators,released
R1070 T1804 T1801 arg1Of cells,released
R1071 T1804 T1802 arg2Of cells,by
R1072 T1804 T1803 arg1Of cells,immune
R1073 T1805 T1789 arg2Of is,indicate
R1074 T1805 T1790 arg1Of is,that
R1075 T1806 T1805 arg2Of likely,is
R1076 T1808 T1806 arg2Of contribute,likely
R1077 T1808 T1807 arg1Of contribute,to
R1078 T1808 T1809 arg1Of contribute,to
R1079 T1811 T1809 arg2Of pathogenesis,to
R1080 T1811 T1810 arg1Of pathogenesis,the
R1081 T1811 T1812 arg1Of pathogenesis,of
R1082 T1813 T1812 arg2Of influenza,of

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1052 964-968 Protein denotes TLR3
T1051 893-898 Protein denotes RIG-I
T1050 847-852 Protein denotes RIG-I
T1049 637-642 Protein denotes RIG-I
T1048 628-632 Protein denotes TLR3

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3662 964-968 http://www.uniprot.org/uniprot/O15455 denotes TLR3
T3661 628-632 http://www.uniprot.org/uniprot/O15455 denotes TLR3

GO-BP

Id Subject Object Predicate Lexical cue
T1115 1188-1200 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T1111 186-207 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammatory response
T1108 609-626 http://purl.obolibrary.org/obo/GO_0019079 denotes viral replication
T1106 609-626 http://purl.obolibrary.org/obo/GO_0019058 denotes viral replication
T1090 862-871 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T1087 812-827 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response

GO-CC

Id Subject Object Predicate Lexical cue
T1209 512-516 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T1206 507-516 http://purl.obolibrary.org/obo/GO_0043657 denotes host cell
T1204 507-511 http://purl.obolibrary.org/obo/GO_0018995 denotes host
T1203 181-185 http://purl.obolibrary.org/obo/GO_0018995 denotes host

sentences

Id Subject Object Predicate Lexical cue
T925 1035-1214 Sentence denotes These results indicate that an imbalance between the beneficial and harmful effects of mediators released by immune cells is likely to contribute to the pathogenesis of influenza.
T924 878-1034 Sentence denotes Interestingly, RIG-I deficient mice are highly susceptible to IAV [14], [15], whereas TLR3 deficient mice have a survival advantage to acute infection [16].
T923 703-877 Sentence denotes Both receptors contribute to the proinflammatory response to IAV, but the initiation of the innate antiviral immune response largely depends on RIG-I mediated signaling [13].
T922 628-702 Sentence denotes TLR3 and RIG-I have been implicated as sensors of IAV infection [10]–[12].
T921 464-627 Sentence denotes IAV infection leads to the exposure in the host cell of single-stranded genomic RNA and double stranded RNA, the latter being an intermediate of viral replication.
T920 359-463 Sentence denotes In this context, understanding of the mechanisms that regulate IAV-induced immune responses is critical.
T919 209-358 Sentence denotes Emergence of drug-resistant strains of influenza viruses with pandemic potential underscores the importance of developing novel antiviral strategies.
T918 0-208 Sentence denotes Influenza A virus (IAV) is the etiological agent of a contagious acute respiratory disease that causes considerable mortality, which is generally believed to be due to an excessive host inflammatory response.
T29 0-208 Sentence denotes Influenza A virus (IAV) is the etiological agent of a contagious acute respiratory disease that causes considerable mortality, which is generally believed to be due to an excessive host inflammatory response.
T30 209-358 Sentence denotes Emergence of drug-resistant strains of influenza viruses with pandemic potential underscores the importance of developing novel antiviral strategies.
T31 359-463 Sentence denotes In this context, understanding of the mechanisms that regulate IAV-induced immune responses is critical.
T32 464-627 Sentence denotes IAV infection leads to the exposure in the host cell of single-stranded genomic RNA and double stranded RNA, the latter being an intermediate of viral replication.
T33 628-702 Sentence denotes TLR3 and RIG-I have been implicated as sensors of IAV infection [10]–[12].
T34 703-877 Sentence denotes Both receptors contribute to the proinflammatory response to IAV, but the initiation of the innate antiviral immune response largely depends on RIG-I mediated signaling [13].
T35 878-1034 Sentence denotes Interestingly, RIG-I deficient mice are highly susceptible to IAV [14], [15], whereas TLR3 deficient mice have a survival advantage to acute infection [16].
T36 1035-1214 Sentence denotes These results indicate that an imbalance between the beneficial and harmful effects of mediators released by immune cells is likely to contribute to the pathogenesis of influenza.

simple1

Id Subject Object Predicate Lexical cue
T1305 964-968 Protein denotes TLR3
T1304 893-898 Protein denotes RIG-I
T1303 847-852 Protein denotes RIG-I
T1302 637-642 Protein denotes RIG-I
T1301 628-632 Protein denotes TLR3

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4153 899-908 Negative_regulation denotes deficient
T4152 969-978 Negative_regulation denotes deficient
T4116 964-968 Protein denotes TLR3
T4115 893-898 Protein denotes RIG-I
T4114 847-852 Protein denotes RIG-I
T4113 637-642 Protein denotes RIG-I
T4112 628-632 Protein denotes TLR3
R3057 T4115 T4153 themeOf RIG-I,deficient
R3062 T4116 T4152 themeOf TLR3,deficient

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T3742 969-978 Negative_regulation denotes deficient
T3741 899-908 Negative_regulation denotes deficient
T3705 964-968 Protein denotes TLR3
T3704 893-898 Protein denotes RIG-I
T3703 847-852 Protein denotes RIG-I
T3702 637-642 Protein denotes RIG-I
T3701 628-632 Protein denotes TLR3
R2937 T3704 T3741 themeOf RIG-I,deficient
R2944 T3705 T3742 themeOf TLR3,deficient

DLUT931

Id Subject Object Predicate Lexical cue
T3810 899-908 Negative_regulation denotes deficient
T3809 853-861 Positive_regulation denotes mediated
T3773 964-968 Protein denotes TLR3
T3772 893-898 Protein denotes RIG-I
T3771 847-852 Protein denotes RIG-I
T3770 637-642 Protein denotes RIG-I
T3769 628-632 Protein denotes TLR3
R2946 T3771 T3809 themeOf RIG-I,mediated
R2948 T3772 T3810 themeOf RIG-I,deficient

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4348 847-861 Regulation denotes RIG-I mediated
T4345 844-876 Positive_regulation denotes on RIG-I mediated signaling [13]
T4303 703-717 Protein denotes Both receptors
T4296 893-898 Protein denotes RIG-I
T4268 590-626 Entity denotes an intermediate of viral replication
T4251 520-547 Protein denotes single-stranded genomic RNA
T4250 503-572 Entity denotes the host cell of single-stranded genomic RNA and double stranded RNA,
T4249 337-346 Entity denotes antiviral
T4241 847-861 Protein denotes RIG-I mediated
T4227 964-968 Protein denotes TLR3
T4211 964-983 Protein denotes TLR3 deficient mice
T4210 628-632 Protein denotes TLR3
T4166 637-642 Protein denotes RIG-I
T4195 788-827 Entity denotes of the innate antiviral immune response
T4186 1141-1156 Entity denotes by immune cells
T4180 893-913 Protein denotes RIG-I deficient mice
R3102 T4241 T4345 causeOf RIG-I mediated,on RIG-I mediated signaling [13]
R3106 T4241 T4348 themeOf RIG-I mediated,RIG-I mediated

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2966 1213-1214 . denotes .
T2965 1204-1213 NN denotes influenza
T2964 1201-1203 IN denotes of
T2963 1188-1200 NN denotes pathogenesis
T2962 1184-1187 DT denotes the
T2961 1181-1183 TO denotes to
T2960 1170-1180 VB denotes contribute
T2959 1167-1169 TO denotes to
T2958 1160-1166 JJ denotes likely
T2957 1157-1159 VBZ denotes is
T2956 1151-1156 NNS denotes cells
T2955 1144-1150 JJ denotes immune
T2954 1141-1143 IN denotes by
T2953 1132-1140 VBN denotes released
T2952 1122-1131 NNS denotes mediators
T2951 1119-1121 IN denotes of
T2950 1111-1118 NNS denotes effects
T2949 1103-1110 JJ denotes harmful
T2948 1099-1102 CC denotes and
T2947 1088-1098 JJ denotes beneficial
T2946 1084-1087 DT denotes the
T2945 1076-1083 IN denotes between
T2944 1066-1075 NN denotes imbalance
T2943 1063-1065 DT denotes an
T2942 1058-1062 IN denotes that
T2941 1049-1057 VBP denotes indicate
T2940 1041-1048 NNS denotes results
T2939 1035-1040 DT denotes These
T2938 1033-1034 . denotes .
T2937 1032-1033 NNP denotes ]
T2936 1030-1032 CD denotes 16
T2935 1029-1030 NNP denotes [
T2934 1019-1028 NN denotes infection
T2933 1013-1018 JJ denotes acute
T2932 1010-1012 TO denotes to
T2931 1000-1009 NN denotes advantage
T2930 991-999 NN denotes survival
T2929 989-990 DT denotes a
T2928 984-988 VBP denotes have
T2927 979-983 NNS denotes mice
T2926 969-978 JJ denotes deficient
T2925 964-968 CD denotes TLR3
T2924 956-963 IN denotes whereas
T2923 954-955 , denotes ,
T2922 953-954 NNP denotes ]
T2921 951-953 CD denotes 15
T2920 950-951 NNP denotes [
T2919 948-949 , denotes ,
T2918 947-948 NNP denotes ]
T2917 945-947 CD denotes 14
T2916 944-945 NNP denotes [
T2915 940-943 NNP denotes IAV
T2914 937-939 TO denotes to
T2913 925-936 JJ denotes susceptible
T2912 918-924 RB denotes highly
T2911 914-917 VBP denotes are
T2910 909-913 NNS denotes mice
T2909 899-908 NN denotes deficient
T2908 893-898 NNP denotes RIG-I
T2907 891-892 , denotes ,
T2906 878-891 RB denotes Interestingly
T2905 876-877 . denotes .
T2904 875-876 NNP denotes ]
T2903 873-875 CD denotes 13
T2902 872-873 NNP denotes [
T2901 862-871 VBG denotes signaling
T2900 853-861 VBD denotes mediated
T2899 847-852 NNP denotes RIG-I
T2898 844-846 IN denotes on
T2897 836-843 VBZ denotes depends
T2896 828-835 RB denotes largely
T2895 819-827 NN denotes response
T2894 812-818 JJ denotes immune
T2893 802-811 JJ denotes antiviral
T2892 795-801 NN denotes innate
T2891 791-794 DT denotes the
T2890 788-790 IN denotes of
T2889 777-787 NN denotes initiation
T2888 773-776 DT denotes the
T2887 769-772 CC denotes but
T2886 767-768 , denotes ,
T2885 764-767 NNP denotes IAV
T2884 761-763 TO denotes to
T2883 752-760 NN denotes response
T2882 736-751 JJ denotes proinflammatory
T2881 732-735 DT denotes the
T2880 729-731 TO denotes to
T2879 718-728 VBP denotes contribute
T2878 708-717 NNS denotes receptors
T2877 703-707 DT denotes Both
T2876 701-702 . denotes .
T2875 700-701 NNP denotes ]
T2874 698-700 CD denotes 12
T2873 697-698 NNP denotes [
T2872 695-696 NNP denotes ]
T2871 693-695 CD denotes 10
T2870 692-693 NNP denotes [
T2869 682-691 NN denotes infection
T2868 678-681 NNP denotes IAV
T2867 675-677 IN denotes of
T2866 667-674 NNS denotes sensors
T2865 664-666 IN denotes as
T2864 653-663 VBN denotes implicated
T2863 648-652 VBN denotes been
T2862 643-647 VBP denotes have
T2861 637-642 NNP denotes RIG-I
T2860 633-636 CC denotes and
T2859 628-632 CD denotes TLR3
T2858 626-627 . denotes .
T2857 615-626 NN denotes replication
T2856 609-614 JJ denotes viral
T2855 606-608 IN denotes of
T2854 593-605 JJ denotes intermediate
T2853 590-592 DT denotes an
T2852 584-589 VBG denotes being
T2851 577-583 JJ denotes latter
T2850 573-576 DT denotes the
T2849 571-572 , denotes ,
T2848 568-571 NNP denotes RNA
T2847 559-567 VBD denotes stranded
T2846 552-558 JJ denotes double
T2845 548-551 CC denotes and
T2844 544-547 NNP denotes RNA
T2843 536-543 JJ denotes genomic
T2842 520-535 JJ denotes single-stranded
T2841 517-519 IN denotes of
T2840 512-516 NN denotes cell
T2839 507-511 NN denotes host
T2838 503-506 DT denotes the
T2837 500-502 IN denotes in
T2836 491-499 NN denotes exposure
T2835 487-490 DT denotes the
T2834 484-486 TO denotes to
T2833 478-483 VBZ denotes leads
T2832 468-477 NN denotes infection
T2831 464-467 NNP denotes IAV
T2830 462-463 . denotes .
T2829 454-462 JJ denotes critical
T2828 451-453 VBZ denotes is
T2827 441-450 NNS denotes responses
T2826 434-440 JJ denotes immune
T2825 422-433 JJ denotes IAV-induced
T2824 413-421 VBP denotes regulate
T2823 408-412 WDT denotes that
T2822 397-407 NNS denotes mechanisms
T2821 393-396 DT denotes the
T2820 390-392 IN denotes of
T2819 376-389 NN denotes understanding
T2818 374-375 , denotes ,
T2817 367-374 NN denotes context
T2816 362-366 DT denotes this
T2815 359-361 IN denotes In
T2814 357-358 . denotes .
T2813 347-357 NNS denotes strategies
T2812 337-346 JJ denotes antiviral
T2811 331-336 NN denotes novel
T2810 320-330 VBG denotes developing
T2809 317-319 IN denotes of
T2808 306-316 NN denotes importance
T2807 302-305 DT denotes the
T2806 290-301 VBZ denotes underscores
T2805 280-289 JJ denotes potential
T2804 271-279 JJ denotes pandemic
T2803 266-270 IN denotes with
T2802 258-265 NNS denotes viruses
T2801 248-257 NN denotes influenza
T2800 245-247 IN denotes of
T2799 237-244 NNS denotes strains
T2798 222-236 JJ denotes drug-resistant
T2797 219-221 IN denotes of
T2796 209-218 NN denotes Emergence
T2795 207-208 . denotes .
T2794 199-207 NN denotes response
T2793 186-198 JJ denotes inflammatory
T2792 181-185 NN denotes host
T2791 171-180 JJ denotes excessive
T2790 168-170 DT denotes an
T2789 165-167 TO denotes to
T2788 161-164 JJ denotes due
T2787 158-160 VB denotes be
T2786 155-157 TO denotes to
T2785 146-154 VBN denotes believed
T2784 136-145 RB denotes generally
T2783 133-135 VBZ denotes is
T2782 127-132 WDT denotes which
T2781 125-126 , denotes ,
T2780 116-125 NN denotes mortality
T2779 103-115 JJ denotes considerable
T2778 96-102 VBZ denotes causes
T2777 91-95 WDT denotes that
T2776 83-90 NN denotes disease
T2775 71-82 JJ denotes respiratory
T2774 65-70 JJ denotes acute
T2773 54-64 JJ denotes contagious
T2772 52-53 DT denotes a
T2771 49-51 IN denotes of
T2770 43-48 NN denotes agent
T2769 31-42 JJ denotes etiological
T2768 27-30 DT denotes the
T2767 24-26 VBZ denotes is
T2766 22-23 -RRB- denotes )
T2765 19-22 NNP denotes IAV
T2764 18-19 -LRB- denotes (
T2763 12-17 NN denotes virus
T2762 10-11 NNP denotes A
T2761 0-9 NNP denotes Influenza
R2035 T2761 T2767 nsubj Influenza,is
R2039 T2762 T2763 det A,virus
R2043 T2763 T2761 appos virus,Influenza
R2047 T2764 T2765 punct (,IAV
R2048 T2765 T2763 appos IAV,virus
R2049 T2766 T2763 punct ),virus
R2050 T2767 T2767 ROOT is,is
R2051 T2768 T2770 det the,agent
R2052 T2837 T2836 prep in,exposure
R2053 T2769 T2770 amod etiological,agent
R2054 T2838 T2840 det the,cell
R2055 T2839 T2840 compound host,cell
R2056 T2770 T2767 attr agent,is
R2057 T2840 T2837 pobj cell,in
R2058 T2841 T2840 prep of,cell
R2059 T2842 T2844 amod single-stranded,RNA
R2060 T2771 T2770 prep of,agent
R2061 T2843 T2844 compound genomic,RNA
R2062 T2844 T2841 pobj RNA,of
R2063 T2772 T2776 det a,disease
R2064 T2845 T2836 cc and,exposure
R2065 T2773 T2776 amod contagious,disease
R2066 T2846 T2847 nsubj double,stranded
R2067 T2774 T2776 amod acute,disease
R2068 T2847 T2833 ccomp stranded,leads
R2069 T2848 T2847 dobj RNA,stranded
R2070 T2775 T2776 amod respiratory,disease
R2071 T2849 T2848 punct ",",RNA
R2072 T2850 T2851 det the,latter
R2073 T2851 T2852 nsubj latter,being
R2074 T2776 T2771 pobj disease,of
R2075 T2852 T2847 advcl being,stranded
R2076 T2853 T2854 det an,intermediate
R2077 T2777 T2778 nsubj that,causes
R2078 T2854 T2852 attr intermediate,being
R2079 T2855 T2854 prep of,intermediate
R2080 T2856 T2857 amod viral,replication
R2081 T2857 T2855 pobj replication,of
R2082 T2858 T2833 punct .,leads
R2083 T2778 T2776 relcl causes,disease
R2084 T2859 T2864 nsubjpass TLR3,implicated
R2085 T2860 T2859 cc and,TLR3
R2086 T2861 T2859 conj RIG-I,TLR3
R2087 T2779 T2780 amod considerable,mortality
R2088 T2862 T2864 aux have,implicated
R2089 T2863 T2864 auxpass been,implicated
R2090 T2864 T2864 ROOT implicated,implicated
R2091 T2780 T2778 dobj mortality,causes
R2092 T2865 T2864 prep as,implicated
R2093 T2866 T2865 pobj sensors,as
R2094 T2781 T2780 punct ",",mortality
R2095 T2782 T2785 nsubjpass which,believed
R2096 T2867 T2866 prep of,sensors
R2097 T2783 T2785 auxpass is,believed
R2098 T2784 T2785 advmod generally,believed
R2099 T2868 T2869 compound IAV,infection
R2100 T2869 T2867 pobj infection,of
R2101 T2870 T2872 nmod [,]
R2102 T2785 T2780 relcl believed,mortality
R2103 T2871 T2872 nummod 10,]
R2104 T2872 T2866 appos ],sensors
R2105 T2873 T2875 nmod [,]
R2106 T2786 T2787 aux to,be
R2107 T2874 T2875 nummod 12,]
R2108 T2875 T2872 appos ],]
R2109 T2787 T2785 xcomp be,believed
R2110 T2876 T2864 punct .,implicated
R2111 T2877 T2878 det Both,receptors
R2112 T2878 T2879 nsubj receptors,contribute
R2113 T2788 T2787 acomp due,be
R2114 T2879 T2879 ROOT contribute,contribute
R2115 T2880 T2879 prep to,contribute
R2116 T2881 T2883 det the,response
R2117 T2789 T2788 prep to,due
R2118 T2882 T2883 amod proinflammatory,response
R2119 T2883 T2880 pobj response,to
R2120 T2790 T2794 det an,response
R2121 T2884 T2883 prep to,response
R2122 T2885 T2884 pobj IAV,to
R2123 T2886 T2879 punct ",",contribute
R2124 T2791 T2794 amod excessive,response
R2125 T2887 T2879 cc but,contribute
R2126 T2888 T2889 det the,initiation
R2127 T2792 T2794 nmod host,response
R2128 T2889 T2897 nsubj initiation,depends
R2129 T2890 T2889 prep of,initiation
R2130 T2891 T2895 det the,response
R2131 T2892 T2895 amod innate,response
R2132 T2893 T2895 amod antiviral,response
R2133 T2894 T2895 amod immune,response
R2134 T2793 T2794 amod inflammatory,response
R2135 T2895 T2890 pobj response,of
R2136 T2896 T2897 advmod largely,depends
R2137 T2897 T2879 conj depends,contribute
R2138 T2794 T2789 pobj response,to
R2139 T2898 T2897 prep on,depends
R2140 T2899 T2900 nsubj RIG-I,mediated
R2141 T2900 T2879 conj mediated,contribute
R2142 T2795 T2767 punct .,is
R2143 T2901 T2900 xcomp signaling,mediated
R2144 T2902 T2904 nmod [,]
R2145 T2903 T2904 nummod 13,]
R2146 T2904 T2901 dobj ],signaling
R2147 T2796 T2806 nsubj Emergence,underscores
R2148 T2905 T2900 punct .,mediated
R2149 T2906 T2911 advmod Interestingly,are
R2150 T2907 T2911 punct ",",are
R2151 T2797 T2796 prep of,Emergence
R2152 T2908 T2910 nmod RIG-I,mice
R2153 T2909 T2910 amod deficient,mice
R2154 T2910 T2911 nsubj mice,are
R2155 T2798 T2799 amod drug-resistant,strains
R2156 T2911 T2911 ROOT are,are
R2157 T2912 T2913 advmod highly,susceptible
R2158 T2799 T2797 pobj strains,of
R2159 T2913 T2911 acomp susceptible,are
R2160 T2914 T2913 prep to,susceptible
R2161 T2915 T2916 compound IAV,[
R2162 T2916 T2914 pobj [,to
R2163 T2800 T2799 prep of,strains
R2164 T2917 T2918 nummod 14,]
R2165 T2918 T2916 appos ],[
R2166 T2801 T2802 compound influenza,viruses
R2167 T2919 T2918 punct ",",]
R2168 T2920 T2922 nmod [,]
R2169 T2921 T2922 nummod 15,]
R2170 T2922 T2916 conj ],[
R2171 T2802 T2800 pobj viruses,of
R2172 T2923 T2911 punct ",",are
R2173 T2924 T2928 mark whereas,have
R2174 T2803 T2799 prep with,strains
R2175 T2925 T2927 nummod TLR3,mice
R2176 T2926 T2927 amod deficient,mice
R2177 T2927 T2928 nsubj mice,have
R2178 T2928 T2911 advcl have,are
R2179 T2804 T2805 amod pandemic,potential
R2180 T2929 T2931 det a,advantage
R2181 T2930 T2931 compound survival,advantage
R2182 T2931 T2928 dobj advantage,have
R2183 T2932 T2931 prep to,advantage
R2184 T2933 T2934 amod acute,infection
R2185 T2805 T2803 pobj potential,with
R2186 T2806 T2806 ROOT underscores,underscores
R2187 T2807 T2808 det the,importance
R2188 T2934 T2932 pobj infection,to
R2189 T2935 T2932 pobj [,to
R2190 T2808 T2806 dobj importance,underscores
R2191 T2936 T2937 nummod 16,]
R2192 T2937 T2935 dobj ],[
R2193 T2938 T2911 punct .,are
R2194 T2809 T2808 prep of,importance
R2195 T2939 T2940 det These,results
R2196 T2940 T2941 nsubj results,indicate
R2197 T2941 T2941 ROOT indicate,indicate
R2198 T2810 T2809 pcomp developing,of
R2199 T2942 T2957 mark that,is
R2200 T2943 T2944 det an,imbalance
R2201 T2944 T2957 nsubj imbalance,is
R2202 T2811 T2813 amod novel,strategies
R2203 T2945 T2944 prep between,imbalance
R2204 T2946 T2950 det the,effects
R2205 T2812 T2813 amod antiviral,strategies
R2206 T2947 T2950 amod beneficial,effects
R2207 T2813 T2810 dobj strategies,developing
R2208 T2814 T2806 punct .,underscores
R2209 T2948 T2947 cc and,beneficial
R2210 T2815 T2828 prep In,is
R2211 T2949 T2947 conj harmful,beneficial
R2212 T2950 T2945 pobj effects,between
R2213 T2816 T2817 det this,context
R2214 T2951 T2950 prep of,effects
R2215 T2952 T2951 pobj mediators,of
R2216 T2953 T2950 acl released,effects
R2217 T2817 T2815 pobj context,In
R2218 T2954 T2953 agent by,released
R2219 T2955 T2956 amod immune,cells
R2220 T2956 T2954 pobj cells,by
R2221 T2818 T2828 punct ",",is
R2222 T2957 T2941 ccomp is,indicate
R2223 T2958 T2957 acomp likely,is
R2224 T2819 T2828 nsubj understanding,is
R2225 T2959 T2960 aux to,contribute
R2226 T2960 T2958 xcomp contribute,likely
R2227 T2961 T2960 prep to,contribute
R2228 T2820 T2819 prep of,understanding
R2229 T2962 T2963 det the,pathogenesis
R2230 T2963 T2961 pobj pathogenesis,to
R2231 T2964 T2963 prep of,pathogenesis
R2232 T2965 T2964 pobj influenza,of
R2233 T2966 T2941 punct .,indicate
R2235 T2821 T2822 det the,mechanisms
R2239 T2822 T2820 pobj mechanisms,of
R2244 T2823 T2824 nsubj that,regulate
R2245 T2824 T2822 relcl regulate,mechanisms
R2247 T2825 T2827 amod IAV-induced,responses
R2251 T2826 T2827 amod immune,responses
R2255 T2827 T2824 dobj responses,regulate
R2259 T2828 T2828 ROOT is,is
R2264 T2829 T2828 acomp critical,is
R2268 T2830 T2828 punct .,is
R2272 T2831 T2832 compound IAV,infection
R2276 T2832 T2833 nsubj infection,leads
R2280 T2833 T2833 ROOT leads,leads
R2287 T2834 T2833 prep to,leads
R2291 T2835 T2836 det the,exposure
R2295 T2836 T2834 pobj exposure,to

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T3934 969-978 Negative_regulation denotes deficient
T3933 964-968 Protein denotes TLR3
T3932 847-852 Protein denotes RIG-I
T3931 637-642 Protein denotes RIG-I
T3930 628-632 Protein denotes TLR3
R3011 T3933 T3934 themeOf TLR3,deficient

testone

Id Subject Object Predicate Lexical cue
T774 969-978 Negative_regulation denotes deficient
T773 899-908 Negative_regulation denotes deficient
T738 964-968 Protein denotes TLR3
T737 893-898 Protein denotes RIG-I
T736 847-852 Protein denotes RIG-I
T735 637-642 Protein denotes RIG-I
T734 628-632 Protein denotes TLR3
R521 T737 T773 themeOf RIG-I,deficient
R522 T738 T774 themeOf TLR3,deficient