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PMC:3291650 / 405-630 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T20 58-63 Protein denotes RIG-I
T19 28-57 Protein denotes pathogen recognition receptor
T15 58-63 Protein denotes RIG-I
T14 28-57 Protein denotes pathogen recognition receptor

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T150 220-223 CC denotes and
T149 216-219 NN denotes IAV
T148 213-215 TO denotes to
T147 203-212 NN denotes responses
T146 196-202 JJ denotes immune
T145 189-195 JJ denotes innate
T144 180-188 VB denotes regulate
T143 175-179 WDT denotes that
T142 164-174 NN denotes mechanisms
T141 160-163 DT denotes the
T140 146-159 VB denotes Understanding
T139 134-144 NN denotes interferon
T138 124-133 JJ denotes antiviral
T137 120-123 CC denotes and
T136 110-119 NN denotes cytokines
T135 94-109 JJ denotes proinflammatory
T134 91-93 IN denotes of
T133 80-90 NN denotes production
T132 76-79 DT denotes the
T131 68-75 VB denotes induces
T130 64-67 CC denotes and
T129 58-63 NN denotes RIG-I
T128 49-57 NN denotes receptor
T127 37-48 NN denotes recognition
T126 28-36 NN denotes pathogen
T125 14-27 JJ denotes intracellular
T124 10-13 DT denotes the
T123 0-9 VB denotes activates
R55 T123 T130 arg1Of activates,and
R56 T129 T123 arg2Of RIG-I,activates
R57 T129 T124 arg1Of RIG-I,the
R58 T129 T125 arg1Of RIG-I,intracellular
R59 T129 T126 arg1Of RIG-I,pathogen
R60 T129 T127 arg1Of RIG-I,recognition
R61 T129 T128 arg1Of RIG-I,receptor
R62 T131 T130 arg2Of induces,and
R63 T133 T131 arg2Of production,induces
R64 T133 T132 arg1Of production,the
R65 T133 T134 arg1Of production,of
R66 T136 T135 arg1Of cytokines,proinflammatory
R67 T136 T137 arg1Of cytokines,and
R68 T137 T134 arg2Of and,of
R69 T139 T137 arg2Of interferon,and
R70 T139 T138 arg1Of interferon,antiviral
R73 T142 T140 arg2Of mechanisms,Understanding
R74 T142 T141 arg1Of mechanisms,the
R75 T142 T143 arg1Of mechanisms,that
R76 T142 T144 arg1Of mechanisms,regulate
R77 T147 T144 arg2Of responses,regulate
R78 T147 T145 arg1Of responses,innate
R79 T147 T146 arg1Of responses,immune
R80 T147 T148 arg1Of responses,to
R81 T149 T150 arg1Of IAV,and
R82 T150 T148 arg2Of and,to

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T41 28-57 Protein denotes pathogen recognition receptor
T42 58-63 Protein denotes RIG-I

GO-BP

Id Subject Object Predicate Lexical cue
T58 196-212 http://purl.obolibrary.org/obo/GO_0006955 denotes immune responses
T46 189-212 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immune responses
T48 189-212 http://purl.obolibrary.org/obo/GO_0002227 denotes innate immune responses
T50 189-212 http://purl.obolibrary.org/obo/GO_0045088 denotes innate immune responses
T52 189-212 http://purl.obolibrary.org/obo/GO_0002218 denotes innate immune responses
T54 189-212 http://purl.obolibrary.org/obo/GO_0045089 denotes innate immune responses
T56 189-212 http://purl.obolibrary.org/obo/GO_0045824 denotes innate immune responses

GO-CC

Id Subject Object Predicate Lexical cue
T61 14-27 http://purl.obolibrary.org/obo/GO_0005622 denotes intracellular

simple1

Id Subject Object Predicate Lexical cue
T67 58-63 Protein denotes RIG-I
T66 28-57 Protein denotes pathogen recognition receptor

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T608 28-57 Protein denotes pathogen recognition receptor
T609 58-63 Protein denotes RIG-I
T612 0-9 Positive_regulation denotes activates
R506 T608 T612 themeOf pathogen recognition receptor,activates
R507 T609 T612 themeOf RIG-I,activates

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T543 28-57 Protein denotes pathogen recognition receptor
T544 58-63 Protein denotes RIG-I
T547 0-9 Positive_regulation denotes activates
R498 T544 T547 themeOf RIG-I,activates

DLUT931

Id Subject Object Predicate Lexical cue
T550 28-57 Protein denotes pathogen recognition receptor
T551 58-63 Protein denotes RIG-I
T554 0-9 Positive_regulation denotes activates
R501 T550 T554 themeOf pathogen recognition receptor,activates
R502 T551 T554 themeOf RIG-I,activates

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T651 76-144 Gene_expression denotes the production of proinflammatory cytokines and antiviral interferon
T650 76-144 Gene_expression denotes the production of proinflammatory cytokines and antiviral interferon
T649 10-64 Localization denotes the intracellular pathogen recognition receptor RIG-I
T642 10-63 Protein denotes the intracellular pathogen recognition receptor RIG-I
T615 94-119 Protein denotes proinflammatory cytokines
T623 124-133 Entity denotes antiviral
T628 124-144 Protein denotes antiviral interferon
T634 10-63 Protein denotes the intracellular pathogen recognition receptor RIG-I
T637 14-27 Entity denotes intracellular
R510 T615 T651 themeOf proinflammatory cytokines,the production of proinflammatory cytokines and antiviral interferon
R513 T628 T650 themeOf antiviral interferon,the production of proinflammatory cytokines and antiviral interferon
R515 T634 T649 themeOf the intracellular pathogen recognition receptor RIG-I,the intracellular pathogen recognition receptor RIG-I
R516 T637 T649 locationOf intracellular,the intracellular pathogen recognition receptor RIG-I

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T383 220-223 CC denotes and
T382 216-219 NNP denotes IAV
T381 213-215 TO denotes to
T380 203-212 NNS denotes responses
T379 196-202 JJ denotes immune
T378 189-195 JJ denotes innate
T377 180-188 VBP denotes regulate
T376 175-179 WDT denotes that
T375 164-174 NNS denotes mechanisms
T374 160-163 DT denotes the
T373 146-159 VBG denotes Understanding
T372 144-145 . denotes .
T371 134-144 NN denotes interferon
T370 124-133 JJ denotes antiviral
T369 120-123 CC denotes and
T368 110-119 NNS denotes cytokines
T367 94-109 JJ denotes proinflammatory
T366 91-93 IN denotes of
T365 80-90 NN denotes production
T364 76-79 DT denotes the
T363 68-75 VBZ denotes induces
T362 64-67 CC denotes and
T361 58-63 NNP denotes RIG-I
T360 49-57 NN denotes receptor
T359 37-48 NN denotes recognition
T358 28-36 NN denotes pathogen
T357 14-27 JJ denotes intracellular
T356 10-13 DT denotes the
T355 0-9 VBZ denotes activates
R276 T356 T359 det the,recognition
R277 T357 T359 amod intracellular,recognition
R278 T358 T359 compound pathogen,recognition
R279 T359 T355 dobj recognition,activates
R280 T360 T361 compound receptor,RIG-I
R281 T361 T359 appos RIG-I,recognition
R282 T362 T355 cc and,activates
R283 T363 T355 conj induces,activates
R284 T364 T365 det the,production
R285 T365 T363 dobj production,induces
R286 T366 T365 prep of,production
R287 T367 T368 amod proinflammatory,cytokines
R288 T368 T366 pobj cytokines,of
R289 T369 T368 cc and,cytokines
R290 T370 T371 amod antiviral,interferon
R291 T371 T368 conj interferon,cytokines
R294 T374 T375 det the,mechanisms
R295 T375 T373 dobj mechanisms,Understanding
R296 T376 T377 nsubj that,regulate
R297 T377 T375 relcl regulate,mechanisms
R298 T378 T380 amod innate,responses
R299 T379 T380 amod immune,responses
R300 T380 T377 dobj responses,regulate
R301 T381 T380 prep to,responses
R302 T382 T381 pobj IAV,to
R303 T383 T382 cc and,IAV

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T568 68-75 Positive_regulation denotes induces
T567 80-90 Gene_expression denotes production
T566 134-144 Protein denotes interferon
T565 58-63 Protein denotes RIG-I
R457 T566 T567 themeOf interferon,production
R458 T567 T568 themeOf production,induces

testone

Id Subject Object Predicate Lexical cue
T7 58-63 Protein denotes RIG-I
T6 28-57 Protein denotes pathogen recognition receptor