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PMC:3291650 / 40370-41366 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T18656 962-971 Gene_expression denotes expressed
T18655 736-741 Protein denotes IFNα4
T18654 667-672 Protein denotes CXCL1
T18653 596-600 Protein denotes CCL2
T18652 530-533 Protein denotes A20
T18651 461-465 Protein denotes IFNβ
T18650 389-393 Protein denotes IL-6
T18649 736-741 Protein denotes IFNα4
T18648 667-672 Protein denotes CXCL1
T18647 596-600 Protein denotes CCL2
T18646 530-533 Protein denotes A20
T18645 461-465 Protein denotes IFNβ
T18644 389-393 Protein denotes IL-6

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T18830 989-995 NN denotes values
T18829 984-988 NN denotes HPRT
T18828 981-983 TO denotes to
T18827 972-980 JJ denotes relative
T18826 962-971 VB denotes expressed
T18825 958-961 VB denotes are
T18824 950-957 NN denotes Results
T18823 947-948 -RRB- denotes )
T18822 943-947 NN denotes ΔΔCT
T18821 942-943 -LRB- denotes (
T18820 935-941 NN denotes method
T18819 932-934 NN denotes CT
T18818 920-931 JJ denotes comparative
T18817 916-919 DT denotes the
T18816 910-915 VB denotes using
T18815 900-909 VB denotes performed
T18814 896-899 VB denotes was
T18813 881-895 NN denotes Quantification
T18812 878-879 -RRB- denotes )
T18811 850-878 LS denotes //perlprimer.sourceforge.net
T18810 849-850 -COLON- denotes :
T18809 845-849 NN denotes http
T18808 844-845 -LRB- denotes (
T18807 833-843 NN denotes PerlPrimer
T18806 828-832 IN denotes with
T18805 819-827 VB denotes designed
T18804 814-818 VB denotes were
T18803 806-813 NN denotes Primers
T18802 776-804 NN denotes 5′-GATCTCTTAGCACAAGGATGGC-3′
T18801 772-775 CC denotes and
T18800 743-771 NN denotes 5′-TGATGAGCTACTACTGGTCAGC-3′
T18799 741-742 -COLON- denotes :
T18798 736-741 NN denotes IFNα4
T18797 732-735 CC denotes and
T18796 705-731 NN denotes 5′-TGAGTGTGGCTATGACTTCG-3′
T18795 701-704 CC denotes and
T18794 674-700 NN denotes 5′-GAGCCTCTAACCAGTTCCAG-3′
T18793 672-673 -COLON- denotes :
T18792 667-672 NN denotes CXCL1
T18791 665-666 -COLON- denotes ;
T18790 636-665 NN denotes 5′-GCATTAGCTTCAGATTTACGGGT-3′
T18789 632-635 CC denotes and
T18788 602-631 NN denotes 5′-TTAAAAACCTGGATCGGAACCAA-3′
T18787 600-601 -COLON- denotes :
T18786 596-600 NN denotes CCL2
T18785 594-595 -COLON- denotes ;
T18784 568-594 NN denotes 5′-GTTGTCCCATTCGTCATTCC-3′
T18783 564-567 CC denotes and
T18782 535-563 NN denotes 5′-AAACCAATGGTGATGGAAACTG-3′
T18781 533-534 -COLON- denotes :
T18780 530-533 NN denotes A20
T18779 528-529 -COLON- denotes ;
T18778 498-528 NN denotes 5′-GACCTTTCAAATGCAGTAGATTCA-3′
T18777 494-497 CC denotes and
T18776 467-493 NN denotes 5′-TCAGAATGAGTGGTGGTTGC-3′
T18775 465-466 -COLON- denotes :
T18774 461-465 NN denotes IFNβ
T18773 459-460 -COLON- denotes ;
T18772 429-459 NN denotes 5′-AAGTGCATCATCGTTGTTCATACA-3′
T18771 425-428 CC denotes and
T18770 395-424 NN denotes 5′-GAGGATACCACTCCCAACAGACC-3′
T18769 393-394 -COLON- denotes :
T18768 389-393 NN denotes IL-6
T18767 387-388 -COLON- denotes ;
T18766 361-387 NN denotes 5′CGTGATTCAAATCCCTGAAGT-3′
T18765 357-360 CC denotes and
T18764 329-356 NN denotes 5′-AGTGTTGGATACAGGCCAGAC-3′
T18763 327-328 -COLON- denotes :
T18762 323-327 NN denotes HPRT
T18761 321-322 -COLON- denotes :
T18760 314-321 NN denotes primers
T18759 304-313 VB denotes following
T18758 300-303 DT denotes the
T18757 295-299 IN denotes with
T18756 293-294 -RRB- denotes )
T18755 288-293 NN denotes Roche
T18754 287-288 -LRB- denotes (
T18753 280-286 NN denotes system
T18752 270-279 NN denotes detection
T18751 266-269 CD denotes 480
T18750 254-265 NNP denotes Lightcycler
T18749 250-253 DT denotes the
T18748 247-249 IN denotes in
T18747 245-246 -RRB- denotes )
T18746 240-245 NNP denotes Roche
T18745 239-240 -LRB- denotes (
T18744 237-238 CD denotes I
T18743 233-236 NN denotes mix
T18742 226-232 NN denotes master
T18741 224-225 NNP denotes I
T18740 218-223 NNP denotes Green
T18739 213-217 NNP denotes SYBR
T18738 207-212 VB denotes using
T18737 204-206 IN denotes by
T18736 194-203 VB denotes performed
T18735 190-193 VB denotes was
T18734 185-189 NN denotes qPCR
T18733 171-184 NN denotes instructions.
T18732 168-170 POS denotes 's
T18731 156-168 NN denotes manufacturer
T18730 152-155 DT denotes the
T18729 149-151 TO denotes to
T18728 139-148 VB denotes according
T18727 137-138 -RRB- denotes )
T18726 131-137 NN denotes BioRad
T18725 130-131 -LRB- denotes (
T18724 126-129 NN denotes kit
T18723 116-125 NN denotes synthesis
T18722 111-115 NN denotes cDNA
T18721 103-110 NN denotes iScript
T18720 98-102 IN denotes with
T18719 93-97 NN denotes cDNA
T18718 88-92 IN denotes into
T18717 76-87 VB denotes transcribed
T18716 68-75 NN denotes reverse
T18715 64-67 CC denotes and
T18714 62-63 -RRB- denotes )
T18713 56-62 NN denotes BioRad
T18712 55-56 -LRB- denotes (
T18711 51-54 NN denotes kit
T18710 46-50 NN denotes mini
T18709 42-45 NN denotes RNA
T18708 36-41 NNP denotes Total
T18707 30-35 NNP denotes Aurum
T18706 24-29 VB denotes using
T18705 14-23 VB denotes extracted
T18704 10-13 VB denotes was
T18703 6-9 NN denotes RNA
T18702 0-5 JJ denotes Total
R14024 T18703 T18702 arg1Of RNA,Total
R14025 T18703 T18704 arg1Of RNA,was
R14026 T18703 T18705 arg2Of RNA,extracted
R14027 T18705 T18704 arg2Of extracted,was
R14028 T18705 T18706 modOf extracted,using
R14029 T18705 T18715 arg1Of extracted,and
R14030 T18708 T18707 arg1Of Total,Aurum
R14031 T18711 T18706 arg2Of kit,using
R14032 T18711 T18708 arg1Of kit,Total
R14033 T18711 T18709 arg1Of kit,RNA
R14034 T18711 T18710 arg1Of kit,mini
R14035 T18711 T18712 arg1Of kit,(
R14036 T18713 T18712 arg2Of BioRad,(
R14037 T18714 T18712 arg3Of ),(
R14038 T18716 T18717 arg2Of reverse,transcribed
R14039 T18716 T18735 arg1Of reverse,was
R14040 T18716 T18736 arg2Of reverse,performed
R14041 T18717 T18718 arg1Of transcribed,into
R14042 T18717 T18720 arg1Of transcribed,with
R14043 T18717 T18728 arg1Of transcribed,according
R14044 T18719 T18718 arg2Of cDNA,into
R14045 T18724 T18720 arg2Of kit,with
R14046 T18724 T18721 arg1Of kit,iScript
R14047 T18724 T18722 arg1Of kit,cDNA
R14048 T18724 T18723 arg1Of kit,synthesis
R14049 T18724 T18725 arg1Of kit,(
R14050 T18726 T18725 arg2Of BioRad,(
R14051 T18727 T18725 arg3Of ),(
R14052 T18729 T18728 arg2Of to,according
R14053 T18731 T18730 arg1Of manufacturer,the
R14054 T18731 T18732 arg2Of manufacturer,'s
R14055 T18734 T18729 arg2Of qPCR,to
R14056 T18734 T18732 arg1Of qPCR,'s
R14057 T18734 T18733 arg1Of qPCR,instructions.
R14058 T18736 T18715 arg2Of performed,and
R14059 T18736 T18735 arg2Of performed,was
R14060 T18736 T18737 arg1Of performed,by
R14061 T18736 T18763 arg1Of performed,:
R14062 T18738 T18737 arg2Of using,by
R14063 T18741 T18739 arg1Of I,SYBR
R14064 T18741 T18740 arg1Of I,Green
R14065 T18743 T18738 arg2Of mix,using
R14066 T18743 T18741 arg1Of mix,I
R14067 T18743 T18742 arg1Of mix,master
R14068 T18743 T18744 arg1Of mix,I
R14069 T18743 T18745 arg1Of mix,(
R14070 T18743 T18748 arg1Of mix,in
R14071 T18743 T18761 arg1Of mix,:
R14072 T18746 T18745 arg2Of Roche,(
R14073 T18747 T18745 arg3Of ),(
R14074 T18750 T18751 arg1Of Lightcycler,480
R14075 T18753 T18748 arg2Of system,in
R14076 T18753 T18749 arg1Of system,the
R14077 T18753 T18750 arg1Of system,Lightcycler
R14078 T18753 T18752 arg1Of system,detection
R14079 T18753 T18754 arg1Of system,(
R14080 T18753 T18757 arg1Of system,with
R14081 T18755 T18754 arg2Of Roche,(
R14082 T18756 T18754 arg3Of ),(
R14083 T18760 T18757 arg2Of primers,with
R14084 T18760 T18758 arg1Of primers,the
R14085 T18760 T18759 arg1Of primers,following
R14086 T18762 T18761 arg2Of HPRT,:
R14087 T18764 T18765 arg1Of 5′-AGTGTTGGATACAGGCCAGAC-3′,and
R14088 T18765 T18767 arg1Of and,;
R14089 T18766 T18765 arg2Of 5′CGTGATTCAAATCCCTGAAGT-3′,and
R14090 T18768 T18767 arg2Of IL-6,;
R14091 T18768 T18769 arg1Of IL-6,:
R14092 T18770 T18771 arg1Of 5′-GAGGATACCACTCCCAACAGACC-3′,and
R14093 T18771 T18773 arg1Of and,;
R14094 T18772 T18771 arg2Of 5′-AAGTGCATCATCGTTGTTCATACA-3′,and
R14095 T18774 T18773 arg2Of IFNβ,;
R14096 T18774 T18775 arg1Of IFNβ,:
R14097 T18776 T18777 arg1Of 5′-TCAGAATGAGTGGTGGTTGC-3′,and
R14098 T18777 T18779 arg1Of and,;
R14099 T18778 T18777 arg2Of 5′-GACCTTTCAAATGCAGTAGATTCA-3′,and
R14100 T18780 T18779 arg2Of A20,;
R14101 T18780 T18781 arg1Of A20,:
R14102 T18782 T18783 arg1Of 5′-AAACCAATGGTGATGGAAACTG-3′,and
R14103 T18783 T18785 arg1Of and,;
R14104 T18784 T18783 arg2Of 5′-GTTGTCCCATTCGTCATTCC-3′,and
R14105 T18786 T18785 arg2Of CCL2,;
R14106 T18786 T18787 arg1Of CCL2,:
R14107 T18788 T18789 arg1Of 5′-TTAAAAACCTGGATCGGAACCAA-3′,and
R14108 T18789 T18791 arg1Of and,;
R14109 T18790 T18789 arg2Of 5′-GCATTAGCTTCAGATTTACGGGT-3′,and
R14110 T18792 T18791 arg2Of CXCL1,;
R14111 T18792 T18793 arg1Of CXCL1,:
R14112 T18794 T18795 arg1Of 5′-GAGCCTCTAACCAGTTCCAG-3′,and
R14113 T18795 T18799 arg1Of and,:
R14114 T18796 T18797 arg1Of 5′-TGAGTGTGGCTATGACTTCG-3′,and
R14115 T18797 T18795 arg2Of and,and
R14116 T18798 T18797 arg2Of IFNα4,and
R14117 T18800 T18801 arg1Of 5′-TGATGAGCTACTACTGGTCAGC-3′,and
R14118 T18802 T18801 arg2Of 5′-GATCTCTTAGCACAAGGATGGC-3′,and
R14119 T18803 T18804 arg1Of Primers,were
R14120 T18803 T18805 arg2Of Primers,designed
R14121 T18805 T18804 arg2Of designed,were
R14122 T18805 T18806 arg1Of designed,with
R14123 T18807 T18806 arg2Of PerlPrimer,with
R14124 T18807 T18809 arg1Of PerlPrimer,http
R14125 T18807 T18811 arg1Of PerlPrimer,//perlprimer.sourceforge.net
R14126 T18807 T18812 arg1Of PerlPrimer,)
R14127 T18809 T18810 arg1Of http,:
R14128 T18810 T18808 arg1Of :,(
R14129 T18811 T18810 arg2Of //perlprimer.sourceforge.net,:
R14130 T18813 T18814 arg1Of Quantification,was
R14131 T18813 T18815 arg2Of Quantification,performed
R14132 T18815 T18814 arg2Of performed,was
R14133 T18816 T18815 arg3Of using,performed
R14134 T18820 T18816 arg2Of method,using
R14135 T18820 T18817 arg1Of method,the
R14136 T18820 T18818 arg1Of method,comparative
R14137 T18820 T18819 arg1Of method,CT
R14138 T18820 T18821 arg1Of method,(
R14139 T18822 T18821 arg2Of ΔΔCT,(
R14140 T18823 T18821 arg3Of ),(
R14141 T18824 T18825 arg1Of Results,are
R14142 T18824 T18826 arg2Of Results,expressed
R14143 T18826 T18825 arg2Of expressed,are
R14144 T18826 T18828 arg1Of expressed,to
R14145 T18828 T18827 arg1Of to,relative
R14146 T18830 T18828 arg2Of values,to
R14147 T18830 T18829 arg1Of values,HPRT

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T18680 736-741 Protein denotes IFNα4
T18679 667-672 Protein denotes CXCL1
T18678 596-600 Protein denotes CCL2
T18677 530-533 Protein denotes A20
T18676 461-465 Protein denotes IFNβ
T18675 389-393 Protein denotes IL-6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T19026 530-533 http://www.uniprot.org/uniprot/P21580 denotes A20
T19025 389-393 http://www.uniprot.org/uniprot/P05231 denotes IL-6

GO-BP

Id Subject Object Predicate Lexical cue
T18684 984-988 http://purl.obolibrary.org/obo/GO_0004422 denotes HPRT
T18683 323-327 http://purl.obolibrary.org/obo/GO_0004422 denotes HPRT
T18682 116-125 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis

GO-MF

Id Subject Object Predicate Lexical cue
T18688 389-393 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6
T18687 385-391 http://purl.obolibrary.org/obo/GO_0005135 denotes 3′; IL
T18686 984-988 http://purl.obolibrary.org/obo/GO_0004422 denotes HPRT
T18685 323-327 http://purl.obolibrary.org/obo/GO_0004422 denotes HPRT

sentences

Id Subject Object Predicate Lexical cue
T18668 950-996 Sentence denotes Results are expressed relative to HPRT values.
T18667 881-949 Sentence denotes Quantification was performed using the comparative CT method (ΔΔCT).
T18666 806-880 Sentence denotes Primers were designed with PerlPrimer (http://perlprimer.sourceforge.net).
T18665 743-805 Sentence denotes 5′-TGATGAGCTACTACTGGTCAGC-3′ and 5′-GATCTCTTAGCACAAGGATGGC-3′.
T18664 674-742 Sentence denotes 5′-GAGCCTCTAACCAGTTCCAG-3′ and 5′-TGAGTGTGGCTATGACTTCG-3′ and IFNα4:
T18663 602-673 Sentence denotes 5′-TTAAAAACCTGGATCGGAACCAA-3′ and 5′-GCATTAGCTTCAGATTTACGGGT-3′; CXCL1:
T18662 535-601 Sentence denotes 5′-AAACCAATGGTGATGGAAACTG-3′ and 5′-GTTGTCCCATTCGTCATTCC-3′; CCL2:
T18661 467-534 Sentence denotes 5′-TCAGAATGAGTGGTGGTTGC-3′ and 5′-GACCTTTCAAATGCAGTAGATTCA-3′; A20:
T18660 395-466 Sentence denotes 5′-GAGGATACCACTCCCAACAGACC-3′ and 5′-AAGTGCATCATCGTTGTTCATACA-3′; IFNβ:
T18659 329-394 Sentence denotes 5′-AGTGTTGGATACAGGCCAGAC-3′ and 5′CGTGATTCAAATCCCTGAAGT-3′; IL-6:
T18658 0-328 Sentence denotes Total RNA was extracted using Aurum Total RNA mini kit (BioRad) and reverse transcribed into cDNA with iScript cDNA synthesis kit (BioRad) according to the manufacturer's instructions. qPCR was performed by using SYBR Green I master mix I (Roche) in the Lightcycler 480 detection system (Roche) with the following primers: HPRT:
T263 0-328 Sentence denotes Total RNA was extracted using Aurum Total RNA mini kit (BioRad) and reverse transcribed into cDNA with iScript cDNA synthesis kit (BioRad) according to the manufacturer's instructions. qPCR was performed by using SYBR Green I master mix I (Roche) in the Lightcycler 480 detection system (Roche) with the following primers: HPRT:
T264 329-394 Sentence denotes 5′-AGTGTTGGATACAGGCCAGAC-3′ and 5′CGTGATTCAAATCCCTGAAGT-3′; IL-6:
T265 395-466 Sentence denotes 5′-GAGGATACCACTCCCAACAGACC-3′ and 5′-AAGTGCATCATCGTTGTTCATACA-3′; IFNβ:
T266 467-534 Sentence denotes 5′-TCAGAATGAGTGGTGGTTGC-3′ and 5′-GACCTTTCAAATGCAGTAGATTCA-3′; A20:
T267 535-601 Sentence denotes 5′-AAACCAATGGTGATGGAAACTG-3′ and 5′-GTTGTCCCATTCGTCATTCC-3′; CCL2:
T268 602-673 Sentence denotes 5′-TTAAAAACCTGGATCGGAACCAA-3′ and 5′-GCATTAGCTTCAGATTTACGGGT-3′; CXCL1:
T269 674-742 Sentence denotes 5′-GAGCCTCTAACCAGTTCCAG-3′ and 5′-TGAGTGTGGCTATGACTTCG-3′ and IFNα4:
T270 743-805 Sentence denotes 5′-TGATGAGCTACTACTGGTCAGC-3′ and 5′-GATCTCTTAGCACAAGGATGGC-3′.
T271 806-880 Sentence denotes Primers were designed with PerlPrimer (http://perlprimer.sourceforge.net).
T272 881-949 Sentence denotes Quantification was performed using the comparative CT method (ΔΔCT).
T273 950-996 Sentence denotes Results are expressed relative to HPRT values.

simple1

Id Subject Object Predicate Lexical cue
T18694 736-741 Protein denotes IFNα4
T18693 667-672 Protein denotes CXCL1
T18692 596-600 Protein denotes CCL2
T18691 530-533 Protein denotes A20
T18690 461-465 Protein denotes IFNβ
T18689 389-393 Protein denotes IL-6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T19074 736-741 Protein denotes IFNα4
T19073 667-672 Protein denotes CXCL1
T19072 596-600 Protein denotes CCL2
T19071 530-533 Protein denotes A20
T19070 461-465 Protein denotes IFNβ
T19069 389-393 Protein denotes IL-6

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T19038 736-741 Protein denotes IFNα4
T19037 667-672 Protein denotes CXCL1
T19036 596-600 Protein denotes CCL2
T19035 530-533 Protein denotes A20
T19034 461-465 Protein denotes IFNβ
T19033 389-393 Protein denotes IL-6

DLUT931

Id Subject Object Predicate Lexical cue
T19044 736-741 Protein denotes IFNα4
T19043 667-672 Protein denotes CXCL1
T19042 596-600 Protein denotes CCL2
T19041 530-533 Protein denotes A20
T19040 461-465 Protein denotes IFNβ
T19039 389-393 Protein denotes IL-6

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T19092 0-63 Negative_regulation denotes Total RNA was extracted using Aurum Total RNA mini kit (BioRad)
T19090 389-393 Protein denotes IL-6
T19089 300-327 Protein denotes the following primers: HPRT
T19088 984-988 Protein denotes HPRT
T19086 461-465 Protein denotes IFNβ
T19085 667-672 Protein denotes CXCL1
T19084 736-741 Protein denotes IFNα4
T19083 30-35 Entity denotes Aurum
T19082 932-934 Protein denotes CT
T19081 0-9 Protein denotes Total RNA
T19080 530-533 Protein denotes A20
T19079 596-600 Protein denotes CCL2
T19077 103-115 Entity denotes iScript cDNA
T19076 42-45 Protein denotes RNA
T19075 213-225 Entity denotes SYBR Green I
R14348 T19081 T19092 themeOf Total RNA,Total RNA was extracted using Aurum Total RNA mini kit (BioRad)

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T19024 995-996 . denotes .
T19023 989-995 NNS denotes values
T19022 984-988 NNP denotes HPRT
T19021 981-983 TO denotes to
T19020 972-980 JJ denotes relative
T19019 962-971 VBN denotes expressed
T19018 958-961 VBP denotes are
T19017 950-957 NNS denotes Results
T19016 948-949 . denotes .
T19015 947-948 -RRB- denotes )
T19014 943-947 NNP denotes ΔΔCT
T19013 942-943 -LRB- denotes (
T19012 935-941 NN denotes method
T19011 932-934 NNP denotes CT
T19010 920-931 JJ denotes comparative
T19009 916-919 DT denotes the
T19008 910-915 VBG denotes using
T19007 900-909 VBN denotes performed
T19006 896-899 VBD denotes was
T19005 881-895 NN denotes Quantification
T19004 879-880 . denotes .
T19003 878-879 -RRB- denotes )
T19002 845-878 NN denotes http://perlprimer.sourceforge.net
T19001 844-845 -LRB- denotes (
T19000 833-843 NNP denotes PerlPrimer
T18999 828-832 IN denotes with
T18998 819-827 VBN denotes designed
T18997 814-818 VBD denotes were
T18996 806-813 NNS denotes Primers
T18995 804-805 . denotes .
T18994 803-804 NN denotes ′
T18993 779-803 NN denotes GATCTCTTAGCACAAGGATGGC-3
T18992 778-779 : denotes -
T18991 777-778 SYM denotes ′
T18990 776-777 CD denotes 5
T18989 772-775 CC denotes and
T18988 770-771 NN denotes ′
T18987 746-770 NN denotes TGATGAGCTACTACTGGTCAGC-3
T18986 745-746 : denotes -
T18985 744-745 SYM denotes ′
T18984 743-744 CD denotes 5
T18983 741-742 : denotes :
T18982 736-741 NNP denotes IFNα4
T18981 732-735 CC denotes and
T18980 730-731 NN denotes ′
T18979 708-730 NN denotes TGAGTGTGGCTATGACTTCG-3
T18978 707-708 : denotes -
T18977 706-707 SYM denotes ′
T18976 705-706 CD denotes 5
T18975 701-704 CC denotes and
T18974 699-700 NN denotes ′
T18973 677-699 NN denotes GAGCCTCTAACCAGTTCCAG-3
T18972 676-677 : denotes -
T18971 675-676 SYM denotes ′
T18970 674-675 CD denotes 5
T18969 672-673 : denotes :
T18968 667-672 NNP denotes CXCL1
T18967 665-666 : denotes ;
T18966 664-665 NN denotes ′
T18965 639-664 NN denotes GCATTAGCTTCAGATTTACGGGT-3
T18964 638-639 : denotes -
T18963 637-638 SYM denotes ′
T18962 636-637 CD denotes 5
T18961 632-635 CC denotes and
T18960 630-631 NN denotes ′
T18959 605-630 NN denotes TTAAAAACCTGGATCGGAACCAA-3
T18958 604-605 : denotes -
T18957 603-604 SYM denotes ′
T18956 602-603 CD denotes 5
T18955 600-601 : denotes :
T18954 596-600 NNP denotes CCL2
T18953 594-595 : denotes ;
T18952 593-594 NN denotes ′
T18951 571-593 NN denotes GTTGTCCCATTCGTCATTCC-3
T18950 570-571 : denotes -
T18949 569-570 SYM denotes ′
T18948 568-569 CD denotes 5
T18947 564-567 CC denotes and
T18946 562-563 NN denotes ′
T18945 538-562 NN denotes AAACCAATGGTGATGGAAACTG-3
T18944 537-538 : denotes -
T18943 536-537 SYM denotes ′
T18942 535-536 CD denotes 5
T18941 533-534 : denotes :
T18940 530-533 NNP denotes A20
T18939 528-529 : denotes ;
T18938 527-528 NN denotes ′
T18937 501-527 NN denotes GACCTTTCAAATGCAGTAGATTCA-3
T18936 500-501 : denotes -
T18935 499-500 SYM denotes ′
T18934 498-499 CD denotes 5
T18933 494-497 CC denotes and
T18932 492-493 NN denotes ′
T18931 470-492 NN denotes TCAGAATGAGTGGTGGTTGC-3
T18930 469-470 : denotes -
T18929 468-469 SYM denotes ′
T18928 467-468 CD denotes 5
T18927 465-466 : denotes :
T18926 461-465 NNP denotes IFNβ
T18925 459-460 : denotes ;
T18924 458-459 NN denotes ′
T18923 432-458 NN denotes AAGTGCATCATCGTTGTTCATACA-3
T18922 431-432 : denotes -
T18921 430-431 SYM denotes ′
T18920 429-430 CD denotes 5
T18919 425-428 CC denotes and
T18918 423-424 NN denotes ′
T18917 398-423 NN denotes GAGGATACCACTCCCAACAGACC-3
T18916 397-398 : denotes -
T18915 396-397 SYM denotes ′
T18914 395-396 CD denotes 5
T18913 393-394 : denotes :
T18912 389-393 NNP denotes IL-6
T18911 387-388 : denotes ;
T18910 386-387 NN denotes ′
T18909 363-386 JJ denotes CGTGATTCAAATCCCTGAAGT-3
T18908 362-363 CD denotes ′
T18907 361-362 CD denotes 5
T18906 357-360 CC denotes and
T18905 355-356 NN denotes ′
T18904 332-355 NN denotes AGTGTTGGATACAGGCCAGAC-3
T18903 331-332 : denotes -
T18902 330-331 SYM denotes ′
T18901 329-330 CD denotes 5
T18900 327-328 : denotes :
T18899 323-327 NNP denotes HPRT
T18898 321-322 : denotes :
T18897 314-321 NNS denotes primers
T18896 304-313 VBG denotes following
T18895 300-303 DT denotes the
T18894 295-299 IN denotes with
T18893 293-294 -RRB- denotes )
T18892 288-293 NNP denotes Roche
T18891 287-288 -LRB- denotes (
T18890 280-286 NN denotes system
T18889 270-279 NN denotes detection
T18888 266-269 CD denotes 480
T18887 254-265 NNP denotes Lightcycler
T18886 250-253 DT denotes the
T18885 247-249 IN denotes in
T18884 245-246 -RRB- denotes )
T18883 240-245 NNP denotes Roche
T18882 239-240 -LRB- denotes (
T18881 237-238 PRP denotes I
T18880 233-236 NN denotes mix
T18879 226-232 VBP denotes master
T18878 224-225 PRP denotes I
T18877 218-223 NNP denotes Green
T18876 213-217 NNP denotes SYBR
T18875 207-212 VBG denotes using
T18874 204-206 IN denotes by
T18873 194-203 VBN denotes performed
T18872 190-193 VBD denotes was
T18871 185-189 NNP denotes qPCR
T18870 183-184 . denotes .
T18869 171-183 NNS denotes instructions
T18868 168-170 POS denotes 's
T18867 156-168 NN denotes manufacturer
T18866 152-155 DT denotes the
T18865 149-151 TO denotes to
T18864 139-148 VBG denotes according
T18863 137-138 -RRB- denotes )
T18862 131-137 NNP denotes BioRad
T18861 130-131 -LRB- denotes (
T18860 126-129 NN denotes kit
T18859 116-125 NN denotes synthesis
T18858 111-115 NNP denotes cDNA
T18857 103-110 NNP denotes iScript
T18856 98-102 IN denotes with
T18855 93-97 NNP denotes cDNA
T18854 88-92 IN denotes into
T18853 76-87 VBN denotes transcribed
T18852 68-75 VB denotes reverse
T18851 64-67 CC denotes and
T18850 62-63 -RRB- denotes )
T18849 56-62 NNP denotes BioRad
T18848 55-56 -LRB- denotes (
T18847 51-54 NN denotes kit
T18846 46-50 NNS denotes mini
T18845 42-45 NNP denotes RNA
T18844 36-41 NNP denotes Total
T18843 30-35 NNP denotes Aurum
T18842 24-29 VBG denotes using
T18841 14-23 VBN denotes extracted
T18840 10-13 VBD denotes was
T18839 6-9 NNP denotes RNA
T18838 0-5 NNP denotes Total
R14155 T18838 T18839 compound Total,RNA
R14157 T18840 T18841 auxpass was,extracted
R14158 T18841 T18841 ROOT extracted,extracted
R14159 T18842 T18841 advcl using,extracted
R14160 T18843 T18847 compound Aurum,kit
R14161 T18844 T18845 compound Total,RNA
R14162 T18845 T18846 compound RNA,mini
R14163 T18846 T18847 compound mini,kit
R14164 T18847 T18842 dobj kit,using
R14165 T18848 T18847 punct (,kit
R14166 T18849 T18847 appos BioRad,kit
R14167 T18850 T18849 punct ),BioRad
R14168 T18851 T18841 cc and,extracted
R14169 T18852 T18853 nsubj reverse,transcribed
R14170 T18853 T18841 conj transcribed,extracted
R14171 T18854 T18853 prep into,transcribed
R14172 T18855 T18854 pobj cDNA,into
R14173 T18856 T18853 prep with,transcribed
R14174 T18857 T18858 compound iScript,cDNA
R14175 T18858 T18860 compound cDNA,kit
R14176 T18859 T18860 compound synthesis,kit
R14177 T18860 T18856 pobj kit,with
R14178 T18861 T18860 punct (,kit
R14179 T18862 T18860 appos BioRad,kit
R14180 T18863 T18860 punct ),kit
R14181 T18864 T18853 prep according,transcribed
R14182 T18865 T18864 prep to,according
R14183 T18866 T18867 det the,manufacturer
R14184 T18867 T18869 poss manufacturer,instructions
R14185 T18868 T18867 case 's,manufacturer
R14186 T18869 T18865 pobj instructions,to
R14187 T18870 T18853 punct .,transcribed
R14188 T18871 T18873 nsubjpass qPCR,performed
R14189 T18872 T18873 auxpass was,performed
R14190 T18873 T18873 ROOT performed,performed
R14191 T18874 T18873 prep by,performed
R14192 T18875 T18874 pcomp using,by
R14193 T18876 T18877 compound SYBR,Green
R14194 T18877 T18875 dobj Green,using
R14195 T18878 T18879 nsubj I,master
R14196 T18879 T18880 compound master,mix
R14197 T18880 T18873 npadvmod mix,performed
R14198 T18881 T18880 nummod I,mix
R14199 T18882 T18881 punct (,I
R14200 T18883 T18881 appos Roche,I
R14201 T18884 T18881 punct ),I
R14202 T18885 T18881 prep in,I
R14203 T18886 T18890 det the,system
R14204 T18887 T18890 nmod Lightcycler,system
R14205 T18888 T18890 nummod 480,system
R14206 T18889 T18890 compound detection,system
R14207 T18890 T18885 pobj system,in
R14208 T18891 T18890 punct (,system
R14209 T18892 T18890 appos Roche,system
R14210 T18893 T18890 punct ),system
R14211 T18894 T18873 prep with,performed
R14212 T18895 T18897 det the,primers
R14213 T18896 T18897 amod following,primers
R14214 T18897 T18894 pobj primers,with
R14215 T18898 T18873 punct :,performed
R14216 T18899 T18899 ROOT HPRT,HPRT
R14217 T18900 T18899 punct :,HPRT
R14218 T18901 T18905 nummod 5,′
R14219 T18902 T18904 punct ′,AGTGTTGGATACAGGCCAGAC-3
R14220 T18903 T18904 punct -,AGTGTTGGATACAGGCCAGAC-3
R14221 T18904 T18905 compound AGTGTTGGATACAGGCCAGAC-3,′
R14222 T18905 T18899 appos ′,HPRT
R14223 T18906 T18905 cc and,′
R14224 T18907 T18908 nummod 5,′
R14225 T18908 T18910 nummod ′,′
R14226 T18909 T18910 amod CGTGATTCAAATCCCTGAAGT-3,′
R14227 T18910 T18905 conj ′,′
R14228 T18911 T18899 punct ;,HPRT
R14229 T18912 T18899 conj IL-6,HPRT
R14230 T18913 T18912 punct :,IL-6
R14231 T18914 T18918 nummod 5,′
R14232 T18915 T18917 punct ′,GAGGATACCACTCCCAACAGACC-3
R14233 T18916 T18917 punct -,GAGGATACCACTCCCAACAGACC-3
R14234 T18917 T18918 compound GAGGATACCACTCCCAACAGACC-3,′
R14235 T18918 T18912 appos ′,IL-6
R14236 T18919 T18918 cc and,′
R14237 T18920 T18923 nummod 5,AAGTGCATCATCGTTGTTCATACA-3
R14238 T18921 T18923 punct ′,AAGTGCATCATCGTTGTTCATACA-3
R14239 T18922 T18923 punct -,AAGTGCATCATCGTTGTTCATACA-3
R14240 T18923 T18924 compound AAGTGCATCATCGTTGTTCATACA-3,′
R14241 T18924 T18918 conj ′,′
R14242 T18925 T18926 punct ;,IFNβ
R14243 T18926 T18912 conj IFNβ,IL-6
R14244 T18927 T18926 punct :,IFNβ
R14245 T18928 T18932 nummod 5,′
R14246 T18929 T18931 punct ′,TCAGAATGAGTGGTGGTTGC-3
R14247 T18930 T18931 punct -,TCAGAATGAGTGGTGGTTGC-3
R14248 T18931 T18932 compound TCAGAATGAGTGGTGGTTGC-3,′
R14249 T18932 T18926 appos ′,IFNβ
R14250 T18933 T18932 cc and,′
R14251 T18934 T18937 nummod 5,GACCTTTCAAATGCAGTAGATTCA-3
R14252 T18935 T18937 punct ′,GACCTTTCAAATGCAGTAGATTCA-3
R14253 T18936 T18937 punct -,GACCTTTCAAATGCAGTAGATTCA-3
R14254 T18937 T18938 compound GACCTTTCAAATGCAGTAGATTCA-3,′
R14255 T18938 T18932 conj ′,′
R14256 T18939 T18926 punct ;,IFNβ
R14257 T18940 T18926 conj A20,IFNβ
R14258 T18941 T18940 punct :,A20
R14259 T18942 T18946 nummod 5,′
R14260 T18943 T18945 punct ′,AAACCAATGGTGATGGAAACTG-3
R14261 T18944 T18945 punct -,AAACCAATGGTGATGGAAACTG-3
R14262 T18945 T18946 compound AAACCAATGGTGATGGAAACTG-3,′
R14263 T18946 T18940 appos ′,A20
R14264 T18947 T18946 cc and,′
R14265 T18948 T18951 nummod 5,GTTGTCCCATTCGTCATTCC-3
R14266 T18949 T18951 punct ′,GTTGTCCCATTCGTCATTCC-3
R14267 T18950 T18951 punct -,GTTGTCCCATTCGTCATTCC-3
R14268 T18951 T18952 compound GTTGTCCCATTCGTCATTCC-3,′
R14269 T18952 T18946 conj ′,′
R14270 T18953 T18954 punct ;,CCL2
R14271 T18954 T18940 conj CCL2,A20
R14272 T18955 T18954 punct :,CCL2
R14273 T18956 T18960 nummod 5,′
R14274 T18957 T18959 punct ′,TTAAAAACCTGGATCGGAACCAA-3
R14275 T18958 T18959 punct -,TTAAAAACCTGGATCGGAACCAA-3
R14276 T18959 T18960 compound TTAAAAACCTGGATCGGAACCAA-3,′
R14277 T18960 T18954 appos ′,CCL2
R14278 T18961 T18960 cc and,′
R14279 T18962 T18965 nummod 5,GCATTAGCTTCAGATTTACGGGT-3
R14280 T18963 T18965 punct ′,GCATTAGCTTCAGATTTACGGGT-3
R14281 T18964 T18965 punct -,GCATTAGCTTCAGATTTACGGGT-3
R14282 T18965 T18966 compound GCATTAGCTTCAGATTTACGGGT-3,′
R14283 T18966 T18960 conj ′,′
R14284 T18967 T18954 punct ;,CCL2
R14285 T18968 T18954 conj CXCL1,CCL2
R14286 T18969 T18968 punct :,CXCL1
R14287 T18970 T18974 nummod 5,′
R14288 T18971 T18973 punct ′,GAGCCTCTAACCAGTTCCAG-3
R14289 T18972 T18973 punct -,GAGCCTCTAACCAGTTCCAG-3
R14290 T18973 T18974 compound GAGCCTCTAACCAGTTCCAG-3,′
R14291 T18974 T18968 appos ′,CXCL1
R14292 T18975 T18974 cc and,′
R14293 T18976 T18979 nummod 5,TGAGTGTGGCTATGACTTCG-3
R14294 T18977 T18979 punct ′,TGAGTGTGGCTATGACTTCG-3
R14295 T18978 T18979 punct -,TGAGTGTGGCTATGACTTCG-3
R14296 T18979 T18980 compound TGAGTGTGGCTATGACTTCG-3,′
R14297 T18980 T18974 conj ′,′
R14298 T18981 T18980 cc and,′
R14299 T18982 T18980 conj IFNα4,′
R14300 T18983 T18982 punct :,IFNα4
R14301 T18984 T18988 nummod 5,′
R14302 T18985 T18987 punct ′,TGATGAGCTACTACTGGTCAGC-3
R14303 T18986 T18987 punct -,TGATGAGCTACTACTGGTCAGC-3
R14304 T18987 T18988 compound TGATGAGCTACTACTGGTCAGC-3,′
R14305 T18988 T18982 appos ′,IFNα4
R14306 T18989 T18988 cc and,′
R14307 T18990 T18993 nummod 5,GATCTCTTAGCACAAGGATGGC-3
R14308 T18991 T18993 punct ′,GATCTCTTAGCACAAGGATGGC-3
R14309 T18992 T18993 punct -,GATCTCTTAGCACAAGGATGGC-3
R14310 T18993 T18994 compound GATCTCTTAGCACAAGGATGGC-3,′
R14311 T18994 T18988 conj ′,′
R14312 T18995 T18899 punct .,HPRT
R14313 T18996 T18998 nsubjpass Primers,designed
R14314 T18997 T18998 auxpass were,designed
R14315 T18998 T18998 ROOT designed,designed
R14316 T18999 T18998 prep with,designed
R14317 T19000 T18999 pobj PerlPrimer,with
R14318 T19001 T19000 punct (,PerlPrimer
R14319 T19002 T19000 appos http://perlprimer.sourceforge.net,PerlPrimer
R14320 T19003 T19000 punct ),PerlPrimer
R14321 T19004 T18998 punct .,designed
R14322 T19005 T19007 nsubjpass Quantification,performed
R14323 T19006 T19007 auxpass was,performed
R14324 T19007 T19007 ROOT performed,performed
R14325 T19008 T19007 advcl using,performed
R14326 T19009 T19012 det the,method
R14327 T19010 T19012 amod comparative,method
R14328 T19011 T19012 compound CT,method
R14329 T19012 T19008 dobj method,using
R14330 T19013 T19014 punct (,ΔΔCT
R14331 T19014 T19012 appos ΔΔCT,method
R14332 T19015 T19014 punct ),ΔΔCT
R14333 T19016 T19007 punct .,performed
R14334 T19017 T19019 nsubjpass Results,expressed
R14335 T19018 T19019 auxpass are,expressed
R14336 T19019 T19019 ROOT expressed,expressed
R14337 T19020 T19019 oprd relative,expressed
R14338 T19021 T19020 prep to,relative
R14339 T19022 T19023 compound HPRT,values
R14340 T19023 T19021 pobj values,to
R14341 T19024 T19019 punct .,expressed

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T19050 736-741 Protein denotes IFNα4
T19049 667-672 Protein denotes CXCL1
T19048 461-465 Protein denotes IFNβ
T19047 218-238 Protein denotes Green I master mix I
T19046 116-125 Gene_expression denotes synthesis
T19045 103-115 Protein denotes iScript cDNA
T19053 962-971 Gene_expression denotes expressed
T19052 984-988 Protein denotes HPRT
T19051 207-212 Gene_expression denotes using
R14342 T19045 T19046 themeOf iScript cDNA,synthesis
R14343 T19047 T19051 themeOf Green I master mix I,using
R14344 T19052 T19053 themeOf HPRT,expressed

testone

Id Subject Object Predicate Lexical cue
T18643 962-971 Gene_expression denotes expressed
T18642 736-741 Protein denotes IFNα4
T18641 667-672 Protein denotes CXCL1
T18640 596-600 Protein denotes CCL2
T18639 530-533 Protein denotes A20
T18638 461-465 Protein denotes IFNβ
T18637 389-393 Protein denotes IL-6