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PMC:3291650 / 40331-41366 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T18656 1001-1010 Gene_expression denotes expressed
T18655 775-780 Protein denotes IFNα4
T18654 706-711 Protein denotes CXCL1
T18653 635-639 Protein denotes CCL2
T18652 569-572 Protein denotes A20
T18651 500-504 Protein denotes IFNβ
T18650 428-432 Protein denotes IL-6
T18649 775-780 Protein denotes IFNα4
T18648 706-711 Protein denotes CXCL1
T18647 635-639 Protein denotes CCL2
T18646 569-572 Protein denotes A20
T18645 500-504 Protein denotes IFNβ
T18644 428-432 Protein denotes IL-6

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T18830 1028-1034 NN denotes values
T18829 1023-1027 NN denotes HPRT
T18828 1020-1022 TO denotes to
T18827 1011-1019 JJ denotes relative
T18826 1001-1010 VB denotes expressed
T18825 997-1000 VB denotes are
T18824 989-996 NN denotes Results
T18823 986-987 -RRB- denotes )
T18822 982-986 NN denotes ΔΔCT
T18821 981-982 -LRB- denotes (
T18820 974-980 NN denotes method
T18819 971-973 NN denotes CT
T18818 959-970 JJ denotes comparative
T18817 955-958 DT denotes the
T18816 949-954 VB denotes using
T18815 939-948 VB denotes performed
T18814 935-938 VB denotes was
T18813 920-934 NN denotes Quantification
T18812 917-918 -RRB- denotes )
T18811 889-917 LS denotes //perlprimer.sourceforge.net
T18810 888-889 -COLON- denotes :
T18809 884-888 NN denotes http
T18808 883-884 -LRB- denotes (
T18807 872-882 NN denotes PerlPrimer
T18806 867-871 IN denotes with
T18805 858-866 VB denotes designed
T18804 853-857 VB denotes were
T18803 845-852 NN denotes Primers
T18802 815-843 NN denotes 5′-GATCTCTTAGCACAAGGATGGC-3′
T18801 811-814 CC denotes and
T18800 782-810 NN denotes 5′-TGATGAGCTACTACTGGTCAGC-3′
T18799 780-781 -COLON- denotes :
T18798 775-780 NN denotes IFNα4
T18797 771-774 CC denotes and
T18796 744-770 NN denotes 5′-TGAGTGTGGCTATGACTTCG-3′
T18795 740-743 CC denotes and
T18794 713-739 NN denotes 5′-GAGCCTCTAACCAGTTCCAG-3′
T18793 711-712 -COLON- denotes :
T18792 706-711 NN denotes CXCL1
T18791 704-705 -COLON- denotes ;
T18790 675-704 NN denotes 5′-GCATTAGCTTCAGATTTACGGGT-3′
T18789 671-674 CC denotes and
T18788 641-670 NN denotes 5′-TTAAAAACCTGGATCGGAACCAA-3′
T18787 639-640 -COLON- denotes :
T18786 635-639 NN denotes CCL2
T18785 633-634 -COLON- denotes ;
T18784 607-633 NN denotes 5′-GTTGTCCCATTCGTCATTCC-3′
T18783 603-606 CC denotes and
T18782 574-602 NN denotes 5′-AAACCAATGGTGATGGAAACTG-3′
T18781 572-573 -COLON- denotes :
T18780 569-572 NN denotes A20
T18779 567-568 -COLON- denotes ;
T18778 537-567 NN denotes 5′-GACCTTTCAAATGCAGTAGATTCA-3′
T18777 533-536 CC denotes and
T18776 506-532 NN denotes 5′-TCAGAATGAGTGGTGGTTGC-3′
T18775 504-505 -COLON- denotes :
T18774 500-504 NN denotes IFNβ
T18773 498-499 -COLON- denotes ;
T18772 468-498 NN denotes 5′-AAGTGCATCATCGTTGTTCATACA-3′
T18771 464-467 CC denotes and
T18770 434-463 NN denotes 5′-GAGGATACCACTCCCAACAGACC-3′
T18769 432-433 -COLON- denotes :
T18768 428-432 NN denotes IL-6
T18767 426-427 -COLON- denotes ;
T18766 400-426 NN denotes 5′CGTGATTCAAATCCCTGAAGT-3′
T18765 396-399 CC denotes and
T18764 368-395 NN denotes 5′-AGTGTTGGATACAGGCCAGAC-3′
T18763 366-367 -COLON- denotes :
T18762 362-366 NN denotes HPRT
T18761 360-361 -COLON- denotes :
T18760 353-360 NN denotes primers
T18759 343-352 VB denotes following
T18758 339-342 DT denotes the
T18757 334-338 IN denotes with
T18756 332-333 -RRB- denotes )
T18755 327-332 NN denotes Roche
T18754 326-327 -LRB- denotes (
T18753 319-325 NN denotes system
T18752 309-318 NN denotes detection
T18751 305-308 CD denotes 480
T18750 293-304 NNP denotes Lightcycler
T18749 289-292 DT denotes the
T18748 286-288 IN denotes in
T18747 284-285 -RRB- denotes )
T18746 279-284 NNP denotes Roche
T18745 278-279 -LRB- denotes (
T18744 276-277 CD denotes I
T18743 272-275 NN denotes mix
T18742 265-271 NN denotes master
T18741 263-264 NNP denotes I
T18740 257-262 NNP denotes Green
T18739 252-256 NNP denotes SYBR
T18738 246-251 VB denotes using
T18737 243-245 IN denotes by
T18736 233-242 VB denotes performed
T18735 229-232 VB denotes was
T18734 224-228 NN denotes qPCR
T18733 210-223 NN denotes instructions.
T18732 207-209 POS denotes 's
T18731 195-207 NN denotes manufacturer
T18730 191-194 DT denotes the
T18729 188-190 TO denotes to
T18728 178-187 VB denotes according
T18727 176-177 -RRB- denotes )
T18726 170-176 NN denotes BioRad
T18725 169-170 -LRB- denotes (
T18724 165-168 NN denotes kit
T18723 155-164 NN denotes synthesis
T18722 150-154 NN denotes cDNA
T18721 142-149 NN denotes iScript
T18720 137-141 IN denotes with
T18719 132-136 NN denotes cDNA
T18718 127-131 IN denotes into
T18717 115-126 VB denotes transcribed
T18716 107-114 NN denotes reverse
T18715 103-106 CC denotes and
T18714 101-102 -RRB- denotes )
T18713 95-101 NN denotes BioRad
T18712 94-95 -LRB- denotes (
T18711 90-93 NN denotes kit
T18710 85-89 NN denotes mini
T18709 81-84 NN denotes RNA
T18708 75-80 NNP denotes Total
T18707 69-74 NNP denotes Aurum
T18706 63-68 VB denotes using
T18705 53-62 VB denotes extracted
T18704 49-52 VB denotes was
T18703 45-48 NN denotes RNA
T18702 39-44 JJ denotes Total
T18701 34-38 NN denotes qPCR
T18700 30-33 CC denotes and
T18699 20-29 NN denotes synthesis
T18698 15-19 NN denotes cDNA
T18697 13-14 -COMMA- denotes ,
T18696 4-13 NN denotes isolation
T18695 0-3 NN denotes RNA
R14018 T18696 T18695 arg1Of isolation,RNA
R14019 T18696 T18697 arg1Of isolation,","
R14020 T18697 T18700 arg1Of ",",and
R14021 T18699 T18697 arg2Of synthesis,","
R14022 T18699 T18698 arg1Of synthesis,cDNA
R14023 T18701 T18700 arg2Of qPCR,and
R14024 T18703 T18702 arg1Of RNA,Total
R14025 T18703 T18704 arg1Of RNA,was
R14026 T18703 T18705 arg2Of RNA,extracted
R14027 T18705 T18704 arg2Of extracted,was
R14028 T18705 T18706 modOf extracted,using
R14029 T18705 T18715 arg1Of extracted,and
R14030 T18708 T18707 arg1Of Total,Aurum
R14031 T18711 T18706 arg2Of kit,using
R14032 T18711 T18708 arg1Of kit,Total
R14033 T18711 T18709 arg1Of kit,RNA
R14034 T18711 T18710 arg1Of kit,mini
R14035 T18711 T18712 arg1Of kit,(
R14036 T18713 T18712 arg2Of BioRad,(
R14037 T18714 T18712 arg3Of ),(
R14038 T18716 T18717 arg2Of reverse,transcribed
R14039 T18716 T18735 arg1Of reverse,was
R14040 T18716 T18736 arg2Of reverse,performed
R14041 T18717 T18718 arg1Of transcribed,into
R14042 T18717 T18720 arg1Of transcribed,with
R14043 T18717 T18728 arg1Of transcribed,according
R14044 T18719 T18718 arg2Of cDNA,into
R14045 T18724 T18720 arg2Of kit,with
R14046 T18724 T18721 arg1Of kit,iScript
R14047 T18724 T18722 arg1Of kit,cDNA
R14048 T18724 T18723 arg1Of kit,synthesis
R14049 T18724 T18725 arg1Of kit,(
R14050 T18726 T18725 arg2Of BioRad,(
R14051 T18727 T18725 arg3Of ),(
R14052 T18729 T18728 arg2Of to,according
R14053 T18731 T18730 arg1Of manufacturer,the
R14054 T18731 T18732 arg2Of manufacturer,'s
R14055 T18734 T18729 arg2Of qPCR,to
R14056 T18734 T18732 arg1Of qPCR,'s
R14057 T18734 T18733 arg1Of qPCR,instructions.
R14058 T18736 T18715 arg2Of performed,and
R14059 T18736 T18735 arg2Of performed,was
R14060 T18736 T18737 arg1Of performed,by
R14061 T18736 T18763 arg1Of performed,:
R14062 T18738 T18737 arg2Of using,by
R14063 T18741 T18739 arg1Of I,SYBR
R14064 T18741 T18740 arg1Of I,Green
R14065 T18743 T18738 arg2Of mix,using
R14066 T18743 T18741 arg1Of mix,I
R14067 T18743 T18742 arg1Of mix,master
R14068 T18743 T18744 arg1Of mix,I
R14069 T18743 T18745 arg1Of mix,(
R14070 T18743 T18748 arg1Of mix,in
R14071 T18743 T18761 arg1Of mix,:
R14072 T18746 T18745 arg2Of Roche,(
R14073 T18747 T18745 arg3Of ),(
R14074 T18750 T18751 arg1Of Lightcycler,480
R14075 T18753 T18748 arg2Of system,in
R14076 T18753 T18749 arg1Of system,the
R14077 T18753 T18750 arg1Of system,Lightcycler
R14078 T18753 T18752 arg1Of system,detection
R14079 T18753 T18754 arg1Of system,(
R14080 T18753 T18757 arg1Of system,with
R14081 T18755 T18754 arg2Of Roche,(
R14082 T18756 T18754 arg3Of ),(
R14083 T18760 T18757 arg2Of primers,with
R14084 T18760 T18758 arg1Of primers,the
R14085 T18760 T18759 arg1Of primers,following
R14086 T18762 T18761 arg2Of HPRT,:
R14087 T18764 T18765 arg1Of 5′-AGTGTTGGATACAGGCCAGAC-3′,and
R14088 T18765 T18767 arg1Of and,;
R14089 T18766 T18765 arg2Of 5′CGTGATTCAAATCCCTGAAGT-3′,and
R14090 T18768 T18767 arg2Of IL-6,;
R14091 T18768 T18769 arg1Of IL-6,:
R14092 T18770 T18771 arg1Of 5′-GAGGATACCACTCCCAACAGACC-3′,and
R14093 T18771 T18773 arg1Of and,;
R14094 T18772 T18771 arg2Of 5′-AAGTGCATCATCGTTGTTCATACA-3′,and
R14095 T18774 T18773 arg2Of IFNβ,;
R14096 T18774 T18775 arg1Of IFNβ,:
R14097 T18776 T18777 arg1Of 5′-TCAGAATGAGTGGTGGTTGC-3′,and
R14098 T18777 T18779 arg1Of and,;
R14099 T18778 T18777 arg2Of 5′-GACCTTTCAAATGCAGTAGATTCA-3′,and
R14100 T18780 T18779 arg2Of A20,;
R14101 T18780 T18781 arg1Of A20,:
R14102 T18782 T18783 arg1Of 5′-AAACCAATGGTGATGGAAACTG-3′,and
R14103 T18783 T18785 arg1Of and,;
R14104 T18784 T18783 arg2Of 5′-GTTGTCCCATTCGTCATTCC-3′,and
R14105 T18786 T18785 arg2Of CCL2,;
R14106 T18786 T18787 arg1Of CCL2,:
R14107 T18788 T18789 arg1Of 5′-TTAAAAACCTGGATCGGAACCAA-3′,and
R14108 T18789 T18791 arg1Of and,;
R14109 T18790 T18789 arg2Of 5′-GCATTAGCTTCAGATTTACGGGT-3′,and
R14110 T18792 T18791 arg2Of CXCL1,;
R14111 T18792 T18793 arg1Of CXCL1,:
R14112 T18794 T18795 arg1Of 5′-GAGCCTCTAACCAGTTCCAG-3′,and
R14113 T18795 T18799 arg1Of and,:
R14114 T18796 T18797 arg1Of 5′-TGAGTGTGGCTATGACTTCG-3′,and
R14115 T18797 T18795 arg2Of and,and
R14116 T18798 T18797 arg2Of IFNα4,and
R14117 T18800 T18801 arg1Of 5′-TGATGAGCTACTACTGGTCAGC-3′,and
R14118 T18802 T18801 arg2Of 5′-GATCTCTTAGCACAAGGATGGC-3′,and
R14119 T18803 T18804 arg1Of Primers,were
R14120 T18803 T18805 arg2Of Primers,designed
R14121 T18805 T18804 arg2Of designed,were
R14122 T18805 T18806 arg1Of designed,with
R14123 T18807 T18806 arg2Of PerlPrimer,with
R14124 T18807 T18809 arg1Of PerlPrimer,http
R14125 T18807 T18811 arg1Of PerlPrimer,//perlprimer.sourceforge.net
R14126 T18807 T18812 arg1Of PerlPrimer,)
R14127 T18809 T18810 arg1Of http,:
R14128 T18810 T18808 arg1Of :,(
R14129 T18811 T18810 arg2Of //perlprimer.sourceforge.net,:
R14130 T18813 T18814 arg1Of Quantification,was
R14131 T18813 T18815 arg2Of Quantification,performed
R14132 T18815 T18814 arg2Of performed,was
R14133 T18816 T18815 arg3Of using,performed
R14134 T18820 T18816 arg2Of method,using
R14135 T18820 T18817 arg1Of method,the
R14136 T18820 T18818 arg1Of method,comparative
R14137 T18820 T18819 arg1Of method,CT
R14138 T18820 T18821 arg1Of method,(
R14139 T18822 T18821 arg2Of ΔΔCT,(
R14140 T18823 T18821 arg3Of ),(
R14141 T18824 T18825 arg1Of Results,are
R14142 T18824 T18826 arg2Of Results,expressed
R14143 T18826 T18825 arg2Of expressed,are
R14144 T18826 T18828 arg1Of expressed,to
R14145 T18828 T18827 arg1Of to,relative
R14146 T18830 T18828 arg2Of values,to
R14147 T18830 T18829 arg1Of values,HPRT

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T18680 775-780 Protein denotes IFNα4
T18679 706-711 Protein denotes CXCL1
T18678 635-639 Protein denotes CCL2
T18677 569-572 Protein denotes A20
T18676 500-504 Protein denotes IFNβ
T18675 428-432 Protein denotes IL-6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T19026 569-572 http://www.uniprot.org/uniprot/P21580 denotes A20
T19025 428-432 http://www.uniprot.org/uniprot/P05231 denotes IL-6

GO-BP

Id Subject Object Predicate Lexical cue
T18684 1023-1027 http://purl.obolibrary.org/obo/GO_0004422 denotes HPRT
T18683 362-366 http://purl.obolibrary.org/obo/GO_0004422 denotes HPRT
T18682 155-164 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T18681 20-29 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis

GO-MF

Id Subject Object Predicate Lexical cue
T18688 428-432 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6
T18687 424-430 http://purl.obolibrary.org/obo/GO_0005135 denotes 3′; IL
T18686 1023-1027 http://purl.obolibrary.org/obo/GO_0004422 denotes HPRT
T18685 362-366 http://purl.obolibrary.org/obo/GO_0004422 denotes HPRT

sentences

Id Subject Object Predicate Lexical cue
T18668 989-1035 Sentence denotes Results are expressed relative to HPRT values.
T18667 920-988 Sentence denotes Quantification was performed using the comparative CT method (ΔΔCT).
T18666 845-919 Sentence denotes Primers were designed with PerlPrimer (http://perlprimer.sourceforge.net).
T18665 782-844 Sentence denotes 5′-TGATGAGCTACTACTGGTCAGC-3′ and 5′-GATCTCTTAGCACAAGGATGGC-3′.
T18664 713-781 Sentence denotes 5′-GAGCCTCTAACCAGTTCCAG-3′ and 5′-TGAGTGTGGCTATGACTTCG-3′ and IFNα4:
T18663 641-712 Sentence denotes 5′-TTAAAAACCTGGATCGGAACCAA-3′ and 5′-GCATTAGCTTCAGATTTACGGGT-3′; CXCL1:
T18662 574-640 Sentence denotes 5′-AAACCAATGGTGATGGAAACTG-3′ and 5′-GTTGTCCCATTCGTCATTCC-3′; CCL2:
T18661 506-573 Sentence denotes 5′-TCAGAATGAGTGGTGGTTGC-3′ and 5′-GACCTTTCAAATGCAGTAGATTCA-3′; A20:
T18660 434-505 Sentence denotes 5′-GAGGATACCACTCCCAACAGACC-3′ and 5′-AAGTGCATCATCGTTGTTCATACA-3′; IFNβ:
T18659 368-433 Sentence denotes 5′-AGTGTTGGATACAGGCCAGAC-3′ and 5′CGTGATTCAAATCCCTGAAGT-3′; IL-6:
T18658 39-367 Sentence denotes Total RNA was extracted using Aurum Total RNA mini kit (BioRad) and reverse transcribed into cDNA with iScript cDNA synthesis kit (BioRad) according to the manufacturer's instructions. qPCR was performed by using SYBR Green I master mix I (Roche) in the Lightcycler 480 detection system (Roche) with the following primers: HPRT:
T18657 0-38 Sentence denotes RNA isolation, cDNA synthesis and qPCR
T262 0-38 Sentence denotes RNA isolation, cDNA synthesis and qPCR
T263 39-367 Sentence denotes Total RNA was extracted using Aurum Total RNA mini kit (BioRad) and reverse transcribed into cDNA with iScript cDNA synthesis kit (BioRad) according to the manufacturer's instructions. qPCR was performed by using SYBR Green I master mix I (Roche) in the Lightcycler 480 detection system (Roche) with the following primers: HPRT:
T264 368-433 Sentence denotes 5′-AGTGTTGGATACAGGCCAGAC-3′ and 5′CGTGATTCAAATCCCTGAAGT-3′; IL-6:
T265 434-505 Sentence denotes 5′-GAGGATACCACTCCCAACAGACC-3′ and 5′-AAGTGCATCATCGTTGTTCATACA-3′; IFNβ:
T266 506-573 Sentence denotes 5′-TCAGAATGAGTGGTGGTTGC-3′ and 5′-GACCTTTCAAATGCAGTAGATTCA-3′; A20:
T267 574-640 Sentence denotes 5′-AAACCAATGGTGATGGAAACTG-3′ and 5′-GTTGTCCCATTCGTCATTCC-3′; CCL2:
T268 641-712 Sentence denotes 5′-TTAAAAACCTGGATCGGAACCAA-3′ and 5′-GCATTAGCTTCAGATTTACGGGT-3′; CXCL1:
T269 713-781 Sentence denotes 5′-GAGCCTCTAACCAGTTCCAG-3′ and 5′-TGAGTGTGGCTATGACTTCG-3′ and IFNα4:
T270 782-844 Sentence denotes 5′-TGATGAGCTACTACTGGTCAGC-3′ and 5′-GATCTCTTAGCACAAGGATGGC-3′.
T271 845-919 Sentence denotes Primers were designed with PerlPrimer (http://perlprimer.sourceforge.net).
T272 920-988 Sentence denotes Quantification was performed using the comparative CT method (ΔΔCT).
T273 989-1035 Sentence denotes Results are expressed relative to HPRT values.

simple1

Id Subject Object Predicate Lexical cue
T18694 775-780 Protein denotes IFNα4
T18693 706-711 Protein denotes CXCL1
T18692 635-639 Protein denotes CCL2
T18691 569-572 Protein denotes A20
T18690 500-504 Protein denotes IFNβ
T18689 428-432 Protein denotes IL-6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T19074 775-780 Protein denotes IFNα4
T19073 706-711 Protein denotes CXCL1
T19072 635-639 Protein denotes CCL2
T19071 569-572 Protein denotes A20
T19070 500-504 Protein denotes IFNβ
T19069 428-432 Protein denotes IL-6

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T19038 775-780 Protein denotes IFNα4
T19037 706-711 Protein denotes CXCL1
T19036 635-639 Protein denotes CCL2
T19035 569-572 Protein denotes A20
T19034 500-504 Protein denotes IFNβ
T19033 428-432 Protein denotes IL-6

DLUT931

Id Subject Object Predicate Lexical cue
T19044 775-780 Protein denotes IFNα4
T19043 706-711 Protein denotes CXCL1
T19042 635-639 Protein denotes CCL2
T19041 569-572 Protein denotes A20
T19040 500-504 Protein denotes IFNβ
T19039 428-432 Protein denotes IL-6

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T19092 39-102 Negative_regulation denotes Total RNA was extracted using Aurum Total RNA mini kit (BioRad)
T19091 15-29 Entity denotes cDNA synthesis
T19090 428-432 Protein denotes IL-6
T19089 339-366 Protein denotes the following primers: HPRT
T19088 1023-1027 Protein denotes HPRT
T19087 0-3 Protein denotes RNA
T19086 500-504 Protein denotes IFNβ
T19085 706-711 Protein denotes CXCL1
T19084 775-780 Protein denotes IFNα4
T19083 69-74 Entity denotes Aurum
T19082 971-973 Protein denotes CT
T19081 39-48 Protein denotes Total RNA
T19080 569-572 Protein denotes A20
T19079 635-639 Protein denotes CCL2
T19078 34-38 Protein denotes qPCR
T19077 142-154 Entity denotes iScript cDNA
T19076 81-84 Protein denotes RNA
T19075 252-264 Entity denotes SYBR Green I
R14348 T19081 T19092 themeOf Total RNA,Total RNA was extracted using Aurum Total RNA mini kit (BioRad)

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T19024 1034-1035 . denotes .
T19023 1028-1034 NNS denotes values
T19022 1023-1027 NNP denotes HPRT
T19021 1020-1022 TO denotes to
T19020 1011-1019 JJ denotes relative
T19019 1001-1010 VBN denotes expressed
T19018 997-1000 VBP denotes are
T19017 989-996 NNS denotes Results
T19016 987-988 . denotes .
T19015 986-987 -RRB- denotes )
T19014 982-986 NNP denotes ΔΔCT
T19013 981-982 -LRB- denotes (
T19012 974-980 NN denotes method
T19011 971-973 NNP denotes CT
T19010 959-970 JJ denotes comparative
T19009 955-958 DT denotes the
T19008 949-954 VBG denotes using
T19007 939-948 VBN denotes performed
T19006 935-938 VBD denotes was
T19005 920-934 NN denotes Quantification
T19004 918-919 . denotes .
T19003 917-918 -RRB- denotes )
T19002 884-917 NN denotes http://perlprimer.sourceforge.net
T19001 883-884 -LRB- denotes (
T19000 872-882 NNP denotes PerlPrimer
T18999 867-871 IN denotes with
T18998 858-866 VBN denotes designed
T18997 853-857 VBD denotes were
T18996 845-852 NNS denotes Primers
T18995 843-844 . denotes .
T18994 842-843 NN denotes ′
T18993 818-842 NN denotes GATCTCTTAGCACAAGGATGGC-3
T18992 817-818 : denotes -
T18991 816-817 SYM denotes ′
T18990 815-816 CD denotes 5
T18989 811-814 CC denotes and
T18988 809-810 NN denotes ′
T18987 785-809 NN denotes TGATGAGCTACTACTGGTCAGC-3
T18986 784-785 : denotes -
T18985 783-784 SYM denotes ′
T18984 782-783 CD denotes 5
T18983 780-781 : denotes :
T18982 775-780 NNP denotes IFNα4
T18981 771-774 CC denotes and
T18980 769-770 NN denotes ′
T18979 747-769 NN denotes TGAGTGTGGCTATGACTTCG-3
T18978 746-747 : denotes -
T18977 745-746 SYM denotes ′
T18976 744-745 CD denotes 5
T18975 740-743 CC denotes and
T18974 738-739 NN denotes ′
T18973 716-738 NN denotes GAGCCTCTAACCAGTTCCAG-3
T18972 715-716 : denotes -
T18971 714-715 SYM denotes ′
T18970 713-714 CD denotes 5
T18969 711-712 : denotes :
T18968 706-711 NNP denotes CXCL1
T18967 704-705 : denotes ;
T18966 703-704 NN denotes ′
T18965 678-703 NN denotes GCATTAGCTTCAGATTTACGGGT-3
T18964 677-678 : denotes -
T18963 676-677 SYM denotes ′
T18962 675-676 CD denotes 5
T18961 671-674 CC denotes and
T18960 669-670 NN denotes ′
T18959 644-669 NN denotes TTAAAAACCTGGATCGGAACCAA-3
T18958 643-644 : denotes -
T18957 642-643 SYM denotes ′
T18956 641-642 CD denotes 5
T18955 639-640 : denotes :
T18954 635-639 NNP denotes CCL2
T18953 633-634 : denotes ;
T18952 632-633 NN denotes ′
T18951 610-632 NN denotes GTTGTCCCATTCGTCATTCC-3
T18950 609-610 : denotes -
T18949 608-609 SYM denotes ′
T18948 607-608 CD denotes 5
T18947 603-606 CC denotes and
T18946 601-602 NN denotes ′
T18945 577-601 NN denotes AAACCAATGGTGATGGAAACTG-3
T18944 576-577 : denotes -
T18943 575-576 SYM denotes ′
T18942 574-575 CD denotes 5
T18941 572-573 : denotes :
T18940 569-572 NNP denotes A20
T18939 567-568 : denotes ;
T18938 566-567 NN denotes ′
T18937 540-566 NN denotes GACCTTTCAAATGCAGTAGATTCA-3
T18936 539-540 : denotes -
T18935 538-539 SYM denotes ′
T18934 537-538 CD denotes 5
T18933 533-536 CC denotes and
T18932 531-532 NN denotes ′
T18931 509-531 NN denotes TCAGAATGAGTGGTGGTTGC-3
T18930 508-509 : denotes -
T18929 507-508 SYM denotes ′
T18928 506-507 CD denotes 5
T18927 504-505 : denotes :
T18926 500-504 NNP denotes IFNβ
T18925 498-499 : denotes ;
T18924 497-498 NN denotes ′
T18923 471-497 NN denotes AAGTGCATCATCGTTGTTCATACA-3
T18922 470-471 : denotes -
T18921 469-470 SYM denotes ′
T18920 468-469 CD denotes 5
T18919 464-467 CC denotes and
T18918 462-463 NN denotes ′
T18917 437-462 NN denotes GAGGATACCACTCCCAACAGACC-3
T18916 436-437 : denotes -
T18915 435-436 SYM denotes ′
T18914 434-435 CD denotes 5
T18913 432-433 : denotes :
T18912 428-432 NNP denotes IL-6
T18911 426-427 : denotes ;
T18910 425-426 NN denotes ′
T18909 402-425 JJ denotes CGTGATTCAAATCCCTGAAGT-3
T18908 401-402 CD denotes ′
T18907 400-401 CD denotes 5
T18906 396-399 CC denotes and
T18905 394-395 NN denotes ′
T18904 371-394 NN denotes AGTGTTGGATACAGGCCAGAC-3
T18903 370-371 : denotes -
T18902 369-370 SYM denotes ′
T18901 368-369 CD denotes 5
T18900 366-367 : denotes :
T18899 362-366 NNP denotes HPRT
T18898 360-361 : denotes :
T18897 353-360 NNS denotes primers
T18896 343-352 VBG denotes following
T18895 339-342 DT denotes the
T18894 334-338 IN denotes with
T18893 332-333 -RRB- denotes )
T18892 327-332 NNP denotes Roche
T18891 326-327 -LRB- denotes (
T18890 319-325 NN denotes system
T18889 309-318 NN denotes detection
T18888 305-308 CD denotes 480
T18887 293-304 NNP denotes Lightcycler
T18886 289-292 DT denotes the
T18885 286-288 IN denotes in
T18884 284-285 -RRB- denotes )
T18883 279-284 NNP denotes Roche
T18882 278-279 -LRB- denotes (
T18881 276-277 PRP denotes I
T18880 272-275 NN denotes mix
T18879 265-271 VBP denotes master
T18878 263-264 PRP denotes I
T18877 257-262 NNP denotes Green
T18876 252-256 NNP denotes SYBR
T18875 246-251 VBG denotes using
T18874 243-245 IN denotes by
T18873 233-242 VBN denotes performed
T18872 229-232 VBD denotes was
T18871 224-228 NNP denotes qPCR
T18870 222-223 . denotes .
T18869 210-222 NNS denotes instructions
T18868 207-209 POS denotes 's
T18867 195-207 NN denotes manufacturer
T18866 191-194 DT denotes the
T18865 188-190 TO denotes to
T18864 178-187 VBG denotes according
T18863 176-177 -RRB- denotes )
T18862 170-176 NNP denotes BioRad
T18861 169-170 -LRB- denotes (
T18860 165-168 NN denotes kit
T18859 155-164 NN denotes synthesis
T18858 150-154 NNP denotes cDNA
T18857 142-149 NNP denotes iScript
T18856 137-141 IN denotes with
T18855 132-136 NNP denotes cDNA
T18854 127-131 IN denotes into
T18853 115-126 VBN denotes transcribed
T18852 107-114 VB denotes reverse
T18851 103-106 CC denotes and
T18850 101-102 -RRB- denotes )
T18849 95-101 NNP denotes BioRad
T18848 94-95 -LRB- denotes (
T18847 90-93 NN denotes kit
T18846 85-89 NNS denotes mini
T18845 81-84 NNP denotes RNA
T18844 75-80 NNP denotes Total
T18843 69-74 NNP denotes Aurum
T18842 63-68 VBG denotes using
T18841 53-62 VBN denotes extracted
T18840 49-52 VBD denotes was
T18839 45-48 NNP denotes RNA
T18838 39-44 NNP denotes Total
T18837 34-38 NNP denotes qPCR
T18836 30-33 CC denotes and
T18835 20-29 NN denotes synthesis
T18834 15-19 NNP denotes cDNA
T18833 13-14 , denotes ,
T18832 4-13 NN denotes isolation
T18831 0-3 NNP denotes RNA
R14148 T18831 T18832 compound RNA,isolation
R14149 T18832 T18841 nsubjpass isolation,extracted
R14150 T18833 T18832 punct ",",isolation
R14151 T18834 T18835 compound cDNA,synthesis
R14152 T18835 T18832 conj synthesis,isolation
R14153 T18836 T18835 cc and,synthesis
R14154 T18837 T18839 compound qPCR,RNA
R14155 T18838 T18839 compound Total,RNA
R14156 T18839 T18832 appos RNA,isolation
R14157 T18840 T18841 auxpass was,extracted
R14158 T18841 T18841 ROOT extracted,extracted
R14159 T18842 T18841 advcl using,extracted
R14160 T18843 T18847 compound Aurum,kit
R14161 T18844 T18845 compound Total,RNA
R14162 T18845 T18846 compound RNA,mini
R14163 T18846 T18847 compound mini,kit
R14164 T18847 T18842 dobj kit,using
R14165 T18848 T18847 punct (,kit
R14166 T18849 T18847 appos BioRad,kit
R14167 T18850 T18849 punct ),BioRad
R14168 T18851 T18841 cc and,extracted
R14169 T18852 T18853 nsubj reverse,transcribed
R14170 T18853 T18841 conj transcribed,extracted
R14171 T18854 T18853 prep into,transcribed
R14172 T18855 T18854 pobj cDNA,into
R14173 T18856 T18853 prep with,transcribed
R14174 T18857 T18858 compound iScript,cDNA
R14175 T18858 T18860 compound cDNA,kit
R14176 T18859 T18860 compound synthesis,kit
R14177 T18860 T18856 pobj kit,with
R14178 T18861 T18860 punct (,kit
R14179 T18862 T18860 appos BioRad,kit
R14180 T18863 T18860 punct ),kit
R14181 T18864 T18853 prep according,transcribed
R14182 T18865 T18864 prep to,according
R14183 T18866 T18867 det the,manufacturer
R14184 T18867 T18869 poss manufacturer,instructions
R14185 T18868 T18867 case 's,manufacturer
R14186 T18869 T18865 pobj instructions,to
R14187 T18870 T18853 punct .,transcribed
R14188 T18871 T18873 nsubjpass qPCR,performed
R14189 T18872 T18873 auxpass was,performed
R14190 T18873 T18873 ROOT performed,performed
R14191 T18874 T18873 prep by,performed
R14192 T18875 T18874 pcomp using,by
R14193 T18876 T18877 compound SYBR,Green
R14194 T18877 T18875 dobj Green,using
R14195 T18878 T18879 nsubj I,master
R14196 T18879 T18880 compound master,mix
R14197 T18880 T18873 npadvmod mix,performed
R14198 T18881 T18880 nummod I,mix
R14199 T18882 T18881 punct (,I
R14200 T18883 T18881 appos Roche,I
R14201 T18884 T18881 punct ),I
R14202 T18885 T18881 prep in,I
R14203 T18886 T18890 det the,system
R14204 T18887 T18890 nmod Lightcycler,system
R14205 T18888 T18890 nummod 480,system
R14206 T18889 T18890 compound detection,system
R14207 T18890 T18885 pobj system,in
R14208 T18891 T18890 punct (,system
R14209 T18892 T18890 appos Roche,system
R14210 T18893 T18890 punct ),system
R14211 T18894 T18873 prep with,performed
R14212 T18895 T18897 det the,primers
R14213 T18896 T18897 amod following,primers
R14214 T18897 T18894 pobj primers,with
R14215 T18898 T18873 punct :,performed
R14216 T18899 T18899 ROOT HPRT,HPRT
R14217 T18900 T18899 punct :,HPRT
R14218 T18901 T18905 nummod 5,′
R14219 T18902 T18904 punct ′,AGTGTTGGATACAGGCCAGAC-3
R14220 T18903 T18904 punct -,AGTGTTGGATACAGGCCAGAC-3
R14221 T18904 T18905 compound AGTGTTGGATACAGGCCAGAC-3,′
R14222 T18905 T18899 appos ′,HPRT
R14223 T18906 T18905 cc and,′
R14224 T18907 T18908 nummod 5,′
R14225 T18908 T18910 nummod ′,′
R14226 T18909 T18910 amod CGTGATTCAAATCCCTGAAGT-3,′
R14227 T18910 T18905 conj ′,′
R14228 T18911 T18899 punct ;,HPRT
R14229 T18912 T18899 conj IL-6,HPRT
R14230 T18913 T18912 punct :,IL-6
R14231 T18914 T18918 nummod 5,′
R14232 T18915 T18917 punct ′,GAGGATACCACTCCCAACAGACC-3
R14233 T18916 T18917 punct -,GAGGATACCACTCCCAACAGACC-3
R14234 T18917 T18918 compound GAGGATACCACTCCCAACAGACC-3,′
R14235 T18918 T18912 appos ′,IL-6
R14236 T18919 T18918 cc and,′
R14237 T18920 T18923 nummod 5,AAGTGCATCATCGTTGTTCATACA-3
R14238 T18921 T18923 punct ′,AAGTGCATCATCGTTGTTCATACA-3
R14239 T18922 T18923 punct -,AAGTGCATCATCGTTGTTCATACA-3
R14240 T18923 T18924 compound AAGTGCATCATCGTTGTTCATACA-3,′
R14241 T18924 T18918 conj ′,′
R14242 T18925 T18926 punct ;,IFNβ
R14243 T18926 T18912 conj IFNβ,IL-6
R14244 T18927 T18926 punct :,IFNβ
R14245 T18928 T18932 nummod 5,′
R14246 T18929 T18931 punct ′,TCAGAATGAGTGGTGGTTGC-3
R14247 T18930 T18931 punct -,TCAGAATGAGTGGTGGTTGC-3
R14248 T18931 T18932 compound TCAGAATGAGTGGTGGTTGC-3,′
R14249 T18932 T18926 appos ′,IFNβ
R14250 T18933 T18932 cc and,′
R14251 T18934 T18937 nummod 5,GACCTTTCAAATGCAGTAGATTCA-3
R14252 T18935 T18937 punct ′,GACCTTTCAAATGCAGTAGATTCA-3
R14253 T18936 T18937 punct -,GACCTTTCAAATGCAGTAGATTCA-3
R14254 T18937 T18938 compound GACCTTTCAAATGCAGTAGATTCA-3,′
R14255 T18938 T18932 conj ′,′
R14256 T18939 T18926 punct ;,IFNβ
R14257 T18940 T18926 conj A20,IFNβ
R14258 T18941 T18940 punct :,A20
R14259 T18942 T18946 nummod 5,′
R14260 T18943 T18945 punct ′,AAACCAATGGTGATGGAAACTG-3
R14261 T18944 T18945 punct -,AAACCAATGGTGATGGAAACTG-3
R14262 T18945 T18946 compound AAACCAATGGTGATGGAAACTG-3,′
R14263 T18946 T18940 appos ′,A20
R14264 T18947 T18946 cc and,′
R14265 T18948 T18951 nummod 5,GTTGTCCCATTCGTCATTCC-3
R14266 T18949 T18951 punct ′,GTTGTCCCATTCGTCATTCC-3
R14267 T18950 T18951 punct -,GTTGTCCCATTCGTCATTCC-3
R14268 T18951 T18952 compound GTTGTCCCATTCGTCATTCC-3,′
R14269 T18952 T18946 conj ′,′
R14270 T18953 T18954 punct ;,CCL2
R14271 T18954 T18940 conj CCL2,A20
R14272 T18955 T18954 punct :,CCL2
R14273 T18956 T18960 nummod 5,′
R14274 T18957 T18959 punct ′,TTAAAAACCTGGATCGGAACCAA-3
R14275 T18958 T18959 punct -,TTAAAAACCTGGATCGGAACCAA-3
R14276 T18959 T18960 compound TTAAAAACCTGGATCGGAACCAA-3,′
R14277 T18960 T18954 appos ′,CCL2
R14278 T18961 T18960 cc and,′
R14279 T18962 T18965 nummod 5,GCATTAGCTTCAGATTTACGGGT-3
R14280 T18963 T18965 punct ′,GCATTAGCTTCAGATTTACGGGT-3
R14281 T18964 T18965 punct -,GCATTAGCTTCAGATTTACGGGT-3
R14282 T18965 T18966 compound GCATTAGCTTCAGATTTACGGGT-3,′
R14283 T18966 T18960 conj ′,′
R14284 T18967 T18954 punct ;,CCL2
R14285 T18968 T18954 conj CXCL1,CCL2
R14286 T18969 T18968 punct :,CXCL1
R14287 T18970 T18974 nummod 5,′
R14288 T18971 T18973 punct ′,GAGCCTCTAACCAGTTCCAG-3
R14289 T18972 T18973 punct -,GAGCCTCTAACCAGTTCCAG-3
R14290 T18973 T18974 compound GAGCCTCTAACCAGTTCCAG-3,′
R14291 T18974 T18968 appos ′,CXCL1
R14292 T18975 T18974 cc and,′
R14293 T18976 T18979 nummod 5,TGAGTGTGGCTATGACTTCG-3
R14294 T18977 T18979 punct ′,TGAGTGTGGCTATGACTTCG-3
R14295 T18978 T18979 punct -,TGAGTGTGGCTATGACTTCG-3
R14296 T18979 T18980 compound TGAGTGTGGCTATGACTTCG-3,′
R14297 T18980 T18974 conj ′,′
R14298 T18981 T18980 cc and,′
R14299 T18982 T18980 conj IFNα4,′
R14300 T18983 T18982 punct :,IFNα4
R14301 T18984 T18988 nummod 5,′
R14302 T18985 T18987 punct ′,TGATGAGCTACTACTGGTCAGC-3
R14303 T18986 T18987 punct -,TGATGAGCTACTACTGGTCAGC-3
R14304 T18987 T18988 compound TGATGAGCTACTACTGGTCAGC-3,′
R14305 T18988 T18982 appos ′,IFNα4
R14306 T18989 T18988 cc and,′
R14307 T18990 T18993 nummod 5,GATCTCTTAGCACAAGGATGGC-3
R14308 T18991 T18993 punct ′,GATCTCTTAGCACAAGGATGGC-3
R14309 T18992 T18993 punct -,GATCTCTTAGCACAAGGATGGC-3
R14310 T18993 T18994 compound GATCTCTTAGCACAAGGATGGC-3,′
R14311 T18994 T18988 conj ′,′
R14312 T18995 T18899 punct .,HPRT
R14313 T18996 T18998 nsubjpass Primers,designed
R14314 T18997 T18998 auxpass were,designed
R14315 T18998 T18998 ROOT designed,designed
R14316 T18999 T18998 prep with,designed
R14317 T19000 T18999 pobj PerlPrimer,with
R14318 T19001 T19000 punct (,PerlPrimer
R14319 T19002 T19000 appos http://perlprimer.sourceforge.net,PerlPrimer
R14320 T19003 T19000 punct ),PerlPrimer
R14321 T19004 T18998 punct .,designed
R14322 T19005 T19007 nsubjpass Quantification,performed
R14323 T19006 T19007 auxpass was,performed
R14324 T19007 T19007 ROOT performed,performed
R14325 T19008 T19007 advcl using,performed
R14326 T19009 T19012 det the,method
R14327 T19010 T19012 amod comparative,method
R14328 T19011 T19012 compound CT,method
R14329 T19012 T19008 dobj method,using
R14330 T19013 T19014 punct (,ΔΔCT
R14331 T19014 T19012 appos ΔΔCT,method
R14332 T19015 T19014 punct ),ΔΔCT
R14333 T19016 T19007 punct .,performed
R14334 T19017 T19019 nsubjpass Results,expressed
R14335 T19018 T19019 auxpass are,expressed
R14336 T19019 T19019 ROOT expressed,expressed
R14337 T19020 T19019 oprd relative,expressed
R14338 T19021 T19020 prep to,relative
R14339 T19022 T19023 compound HPRT,values
R14340 T19023 T19021 pobj values,to
R14341 T19024 T19019 punct .,expressed

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T19050 775-780 Protein denotes IFNα4
T19049 706-711 Protein denotes CXCL1
T19048 500-504 Protein denotes IFNβ
T19047 257-277 Protein denotes Green I master mix I
T19046 155-164 Gene_expression denotes synthesis
T19045 142-154 Protein denotes iScript cDNA
T19053 1001-1010 Gene_expression denotes expressed
T19052 1023-1027 Protein denotes HPRT
T19051 246-251 Gene_expression denotes using
R14342 T19045 T19046 themeOf iScript cDNA,synthesis
R14343 T19047 T19051 themeOf Green I master mix I,using
R14344 T19052 T19053 themeOf HPRT,expressed

testone

Id Subject Object Predicate Lexical cue
T18643 1001-1010 Gene_expression denotes expressed
T18642 775-780 Protein denotes IFNα4
T18641 706-711 Protein denotes CXCL1
T18640 635-639 Protein denotes CCL2
T18639 569-572 Protein denotes A20
T18638 500-504 Protein denotes IFNβ
T18637 428-432 Protein denotes IL-6