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PMC:3291650 / 38059-38429 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T17331 136-139 CD denotes 0.5
T17330 134-135 -COMMA- denotes ,
T17329 126-134 NN denotes glycerol
T17328 124-125 NN denotes %
T17327 122-124 CD denotes 20
T17326 120-121 -COMMA- denotes ,
T17325 115-120 NN denotes MgCl2
T17324 112-114 NN denotes mM
T17323 110-111 CD denotes 1
T17322 108-109 -COMMA- denotes ,
T17321 105-108 NN denotes KCl
T17320 102-104 NN denotes mM
T17319 99-101 CD denotes 10
T17318 97-98 -COMMA- denotes ,
T17317 93-97 NN denotes NaCl
T17316 90-92 NN denotes mM
T17315 86-89 CD denotes 400
T17314 84-85 -COMMA- denotes ,
T17313 79-84 NN denotes NP-40
T17312 77-78 NN denotes %
T17311 76-77 CD denotes 1
T17310 74-75 -COMMA- denotes ,
T17309 71-74 CD denotes 7.5
T17308 68-70 NN denotes pH
T17307 62-67 NNP denotes Hepes
T17306 59-61 NN denotes mM
T17305 56-58 CD denotes 20
T17304 55-56 -LRB- denotes (
T17303 52-54 NN denotes B2
T17302 49-51 IN denotes in
T17301 43-48 VB denotes lyzed
T17300 39-42 VB denotes was
T17299 32-38 NN denotes pellet
T17298 21-31 VB denotes containing
T17297 12-20 NN denotes fraction
T17296 4-11 JJ denotes nuclear
T17295 0-3 DT denotes The
T17370 368-369 -RRB- denotes )
T17369 360-368 NNP denotes Sciences
T17368 355-359 NNP denotes Life
T17367 349-354 NNP denotes Elmer
T17366 342-348 NNP denotes Perkin
T17365 341-342 -LRB- denotes (
T17364 331-340 NN denotes detection
T17363 327-330 NN denotes ECL
T17362 323-326 CC denotes and
T17361 314-322 NN denotes blotting
T17360 306-313 JJ denotes western
T17359 303-305 IN denotes by
T17358 294-302 VB denotes analyzed
T17357 290-293 CC denotes and
T17356 281-289 NN denotes SDS-PAGE
T17355 278-280 IN denotes by
T17354 268-277 VB denotes separated
T17353 255-267 RB denotes subsequently
T17352 250-254 VB denotes were
T17351 242-249 NN denotes lysates
T17350 238-241 DT denotes The
T17349 233-237 NNP denotes 4°C.
T17348 230-232 IN denotes at
T17347 226-229 NN denotes min
T17346 223-225 CD denotes 15
T17345 219-222 IN denotes for
T17344 217-218 -RRB- denotes )
T17343 207-217 NN denotes inhibitors
T17342 195-206 NN denotes phosphatase
T17341 191-194 CC denotes and
T17340 182-190 NN denotes protease
T17339 177-181 IN denotes with
T17338 164-176 VB denotes supplemented
T17337 159-163 NN denotes EGTA
T17336 156-158 NN denotes mM
T17335 152-155 CD denotes 0.1
T17334 148-151 CC denotes and
T17333 143-147 NN denotes EDTA
T17332 140-142 NN denotes mM
R13070 T17297 T17295 arg1Of fraction,The
R13071 T17297 T17296 arg1Of fraction,nuclear
R13072 T17297 T17298 arg1Of fraction,containing
R13073 T17297 T17300 arg1Of fraction,was
R13074 T17297 T17301 arg2Of fraction,lyzed
R13075 T17299 T17298 arg2Of pellet,containing
R13076 T17301 T17300 arg2Of lyzed,was
R13077 T17301 T17302 arg1Of lyzed,in
R13078 T17301 T17304 arg1Of lyzed,(
R13079 T17301 T17345 arg1Of lyzed,for
R13080 T17303 T17302 arg2Of B2,in
R13081 T17307 T17305 arg1Of Hepes,20
R13082 T17307 T17306 arg1Of Hepes,mM
R13083 T17309 T17310 arg1Of 7.5,","
R13084 T17310 T17308 arg1Of ",",pH
R13085 T17312 T17310 arg2Of %,","
R13086 T17312 T17311 arg1Of %,1
R13087 T17313 T17309 arg1Of NP-40,7.5
R13088 T17313 T17312 arg1Of NP-40,%
R13089 T17313 T17314 arg1Of NP-40,","
R13090 T17314 T17318 arg1Of ",",","
R13091 T17315 T17316 arg1Of 400,mM
R13092 T17317 T17314 arg2Of NaCl,","
R13093 T17317 T17315 arg1Of NaCl,400
R13094 T17318 T17307 arg1Of ",",Hepes
R13095 T17318 T17322 arg1Of ",",","
R13096 T17319 T17320 arg1Of 10,mM
R13097 T17321 T17318 arg2Of KCl,","
R13098 T17321 T17319 arg1Of KCl,10
R13099 T17322 T17326 arg1Of ",",","
R13100 T17323 T17324 arg1Of 1,mM
R13101 T17325 T17322 arg2Of MgCl2,","
R13102 T17325 T17323 arg1Of MgCl2,1
R13103 T17326 T17330 arg1Of ",",","
R13104 T17327 T17328 arg1Of 20,%
R13105 T17329 T17326 arg2Of glycerol,","
R13106 T17329 T17327 arg1Of glycerol,20
R13107 T17330 T17334 arg1Of ",",and
R13108 T17331 T17332 arg1Of 0.5,mM
R13109 T17333 T17330 arg2Of EDTA,","
R13110 T17333 T17331 arg1Of EDTA,0.5
R13111 T17334 T17304 arg2Of and,(
R13112 T17334 T17338 arg2Of and,supplemented
R13113 T17335 T17336 arg1Of 0.1,mM
R13114 T17337 T17334 arg2Of EGTA,and
R13115 T17337 T17335 arg1Of EGTA,0.1
R13116 T17338 T17339 arg1Of supplemented,with
R13117 T17340 T17341 arg1Of protease,and
R13118 T17342 T17341 arg2Of phosphatase,and
R13119 T17343 T17339 arg2Of inhibitors,with
R13120 T17343 T17340 arg1Of inhibitors,protease
R13121 T17343 T17342 arg1Of inhibitors,phosphatase
R13122 T17344 T17304 arg3Of ),(
R13123 T17347 T17345 arg2Of min,for
R13124 T17347 T17346 arg1Of min,15
R13125 T17347 T17348 arg1Of min,at
R13126 T17349 T17348 arg2Of 4°C.,at
R13127 T17351 T17350 arg1Of lysates,The
R13128 T17351 T17352 arg1Of lysates,were
R13129 T17351 T17354 arg2Of lysates,separated
R13130 T17351 T17358 arg2Of lysates,analyzed
R13131 T17354 T17357 arg1Of separated,and
R13132 T17356 T17354 arg1Of SDS-PAGE,separated
R13133 T17356 T17355 arg2Of SDS-PAGE,by
R13134 T17357 T17300 modOf and,was
R13135 T17357 T17352 arg2Of and,were
R13136 T17357 T17353 arg1Of and,subsequently
R13137 T17358 T17357 arg2Of analyzed,and
R13138 T17361 T17362 arg1Of blotting,and
R13139 T17363 T17362 arg2Of ECL,and
R13140 T17364 T17358 arg1Of detection,analyzed
R13141 T17364 T17359 arg2Of detection,by
R13142 T17364 T17360 arg1Of detection,western
R13143 T17364 T17361 arg1Of detection,blotting
R13144 T17364 T17363 arg1Of detection,ECL
R13145 T17364 T17365 arg1Of detection,(
R13146 T17369 T17365 arg2Of Sciences,(
R13147 T17369 T17366 arg1Of Sciences,Perkin
R13148 T17369 T17367 arg1Of Sciences,Elmer
R13149 T17369 T17368 arg1Of Sciences,Life
R13150 T17370 T17365 arg3Of ),(

GO-BP

Id Subject Object Predicate Lexical cue
T17170 195-206 http://purl.obolibrary.org/obo/GO_0016791 denotes phosphatase

GO-MF

Id Subject Object Predicate Lexical cue
T17173 195-206 http://purl.obolibrary.org/obo/GO_0016791 denotes phosphatase

sentences

Id Subject Object Predicate Lexical cue
T17163 0-370 Sentence denotes The nuclear fraction containing pellet was lyzed in B2 (20 mM Hepes pH 7.5, 1% NP-40, 400 mM NaCl, 10 mM KCl, 1 mM MgCl2, 20% glycerol, 0.5 mM EDTA and 0.1 mM EGTA supplemented with protease and phosphatase inhibitors) for 15 min at 4°C. The lysates were subsequently separated by SDS-PAGE and analyzed by western blotting and ECL detection (Perkin Elmer Life Sciences).
T244 0-237 Sentence denotes The nuclear fraction containing pellet was lyzed in B2 (20 mM Hepes pH 7.5, 1% NP-40, 400 mM NaCl, 10 mM KCl, 1 mM MgCl2, 20% glycerol, 0.5 mM EDTA and 0.1 mM EGTA supplemented with protease and phosphatase inhibitors) for 15 min at 4°C.
T245 238-370 Sentence denotes The lysates were subsequently separated by SDS-PAGE and analyzed by western blotting and ECL detection (Perkin Elmer Life Sciences).

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T17791 105-108 Entity denotes KCl
T17790 195-217 Entity denotes phosphatase inhibitors
T17785 182-190 Protein denotes protease
T17784 56-70 Entity denotes 20 mM Hepes pH
T17780 152-163 Entity denotes 0.1 mM EGTA
T17779 195-206 Protein denotes phosphatase
T17777 86-97 Entity denotes 400 mM NaCl
T17766 62-67 Entity denotes Hepes
T17763 52-54 Entity denotes B2
T17760 327-330 Protein denotes ECL
T17758 122-134 Entity denotes 20% glycerol
T17753 136-147 Entity denotes 0.5 mM EDTA

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T17605 148-151 CC denotes and
T17604 143-147 NNP denotes EDTA
T17603 140-142 NNP denotes mM
T17602 136-139 CD denotes 0.5
T17601 134-135 , denotes ,
T17600 126-134 NN denotes glycerol
T17599 124-125 NN denotes %
T17598 122-124 CD denotes 20
T17597 120-121 , denotes ,
T17596 115-120 NNP denotes MgCl2
T17595 112-114 NNP denotes mM
T17594 110-111 CD denotes 1
T17593 108-109 , denotes ,
T17592 105-108 NNP denotes KCl
T17591 102-104 NNP denotes mM
T17590 99-101 CD denotes 10
T17589 97-98 , denotes ,
T17588 93-97 NNP denotes NaCl
T17587 90-92 NNP denotes mM
T17586 86-89 CD denotes 400
T17585 84-85 , denotes ,
T17584 79-84 NN denotes NP-40
T17583 77-78 NN denotes %
T17582 76-77 CD denotes 1
T17581 74-75 , denotes ,
T17580 71-74 CD denotes 7.5
T17579 68-70 NNP denotes pH
T17578 62-67 NNP denotes Hepes
T17577 59-61 NNP denotes mM
T17576 56-58 CD denotes 20
T17575 55-56 -LRB- denotes (
T17574 52-54 NN denotes B2
T17573 49-51 IN denotes in
T17572 43-48 VBN denotes lyzed
T17571 39-42 VBD denotes was
T17570 32-38 NN denotes pellet
T17569 21-31 VBG denotes containing
T17568 12-20 NN denotes fraction
T17567 4-11 JJ denotes nuclear
T17566 0-3 DT denotes The
T17645 369-370 . denotes .
T17644 368-369 -RRB- denotes )
T17643 360-368 NNPS denotes Sciences
T17642 355-359 NNP denotes Life
T17641 349-354 NNP denotes Elmer
T17640 342-348 NNP denotes Perkin
T17639 341-342 -LRB- denotes (
T17638 331-340 NN denotes detection
T17637 327-330 NNP denotes ECL
T17636 323-326 CC denotes and
T17635 314-322 VBG denotes blotting
T17634 306-313 JJ denotes western
T17633 303-305 IN denotes by
T17632 294-302 VBN denotes analyzed
T17631 290-293 CC denotes and
T17630 281-289 NNP denotes SDS-PAGE
T17629 278-280 IN denotes by
T17628 268-277 VBN denotes separated
T17627 255-267 RB denotes subsequently
T17626 250-254 VBD denotes were
T17625 242-249 NNS denotes lysates
T17624 238-241 DT denotes The
T17623 236-237 . denotes .
T17622 235-236 NNP denotes C
T17621 234-235 CD denotes °
T17620 233-234 CD denotes 4
T17619 230-232 IN denotes at
T17618 226-229 NN denotes min
T17617 223-225 CD denotes 15
T17616 219-222 IN denotes for
T17615 217-218 -RRB- denotes )
T17614 207-217 NNS denotes inhibitors
T17613 195-206 NN denotes phosphatase
T17612 191-194 CC denotes and
T17611 182-190 NN denotes protease
T17610 177-181 IN denotes with
T17609 164-176 VBD denotes supplemented
T17608 159-163 NNP denotes EGTA
T17607 156-158 NNP denotes mM
T17606 152-155 CD denotes 0.1
R13350 T17566 T17568 det The,fraction
R13351 T17567 T17568 amod nuclear,fraction
R13352 T17568 T17571 nsubj fraction,was
R13353 T17569 T17568 acl containing,fraction
R13354 T17570 T17569 dobj pellet,containing
R13355 T17571 T17572 auxpass was,lyzed
R13356 T17572 T17572 ROOT lyzed,lyzed
R13357 T17573 T17572 prep in,lyzed
R13358 T17574 T17573 pobj B2,in
R13359 T17575 T17572 punct (,lyzed
R13360 T17576 T17579 nummod 20,pH
R13361 T17577 T17579 compound mM,pH
R13362 T17578 T17579 compound Hepes,pH
R13363 T17579 T17572 appos pH,lyzed
R13364 T17580 T17579 nummod 7.5,pH
R13365 T17581 T17579 punct ",",pH
R13366 T17582 T17583 nummod 1,%
R13367 T17583 T17584 compound %,NP-40
R13368 T17584 T17579 appos NP-40,pH
R13369 T17585 T17584 punct ",",NP-40
R13370 T17586 T17588 nummod 400,NaCl
R13371 T17587 T17588 compound mM,NaCl
R13372 T17588 T17609 nsubj NaCl,supplemented
R13373 T17589 T17588 punct ",",NaCl
R13374 T17590 T17592 nummod 10,KCl
R13375 T17591 T17592 compound mM,KCl
R13376 T17592 T17588 appos KCl,NaCl
R13377 T17593 T17592 punct ",",KCl
R13378 T17594 T17596 nummod 1,MgCl2
R13379 T17595 T17596 compound mM,MgCl2
R13380 T17596 T17588 appos MgCl2,NaCl
R13381 T17597 T17596 punct ",",MgCl2
R13382 T17598 T17599 nummod 20,%
R13383 T17599 T17600 compound %,glycerol
R13384 T17600 T17596 appos glycerol,MgCl2
R13385 T17601 T17596 punct ",",MgCl2
R13386 T17602 T17604 nummod 0.5,EDTA
R13387 T17603 T17604 compound mM,EDTA
R13388 T17604 T17596 conj EDTA,MgCl2
R13389 T17605 T17604 cc and,EDTA
R13390 T17606 T17608 nummod 0.1,EGTA
R13391 T17607 T17608 compound mM,EGTA
R13392 T17608 T17604 conj EGTA,EDTA
R13393 T17609 T17609 ROOT supplemented,supplemented
R13394 T17610 T17609 prep with,supplemented
R13395 T17611 T17614 nmod protease,inhibitors
R13396 T17612 T17611 cc and,protease
R13397 T17613 T17611 conj phosphatase,protease
R13398 T17614 T17610 pobj inhibitors,with
R13399 T17615 T17609 punct ),supplemented
R13400 T17616 T17609 prep for,supplemented
R13401 T17617 T17618 nummod 15,min
R13402 T17618 T17616 pobj min,for
R13403 T17619 T17609 prep at,supplemented
R13404 T17620 T17621 nummod 4,°
R13405 T17621 T17619 pobj °,at
R13406 T17622 T17609 conj C,supplemented
R13407 T17623 T17609 punct .,supplemented
R13408 T17624 T17625 det The,lysates
R13409 T17625 T17628 nsubjpass lysates,separated
R13410 T17626 T17628 auxpass were,separated
R13411 T17627 T17628 advmod subsequently,separated
R13412 T17628 T17628 ROOT separated,separated
R13413 T17629 T17628 agent by,separated
R13414 T17630 T17629 pobj SDS-PAGE,by
R13415 T17631 T17628 cc and,separated
R13416 T17632 T17628 conj analyzed,separated
R13417 T17633 T17632 agent by,analyzed
R13418 T17634 T17635 amod western,blotting
R13419 T17635 T17633 pobj blotting,by
R13420 T17636 T17635 cc and,blotting
R13421 T17637 T17638 compound ECL,detection
R13422 T17638 T17635 conj detection,blotting
R13423 T17639 T17643 punct (,Sciences
R13424 T17640 T17643 compound Perkin,Sciences
R13425 T17641 T17643 compound Elmer,Sciences
R13426 T17642 T17643 compound Life,Sciences
R13427 T17643 T17638 appos Sciences,detection
R13428 T17644 T17638 punct ),detection
R13429 T17645 T17628 punct .,separated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T17727 156-206 Protein denotes mM EGTA supplemented with protease and phosphatase