
PMC:3291650 / 38059-38429
Annnotations
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T17331 | 136-139 | CD | denotes | 0.5 |
T17330 | 134-135 | -COMMA- | denotes | , |
T17329 | 126-134 | NN | denotes | glycerol |
T17328 | 124-125 | NN | denotes | % |
T17327 | 122-124 | CD | denotes | 20 |
T17326 | 120-121 | -COMMA- | denotes | , |
T17325 | 115-120 | NN | denotes | MgCl2 |
T17324 | 112-114 | NN | denotes | mM |
T17323 | 110-111 | CD | denotes | 1 |
T17322 | 108-109 | -COMMA- | denotes | , |
T17321 | 105-108 | NN | denotes | KCl |
T17320 | 102-104 | NN | denotes | mM |
T17319 | 99-101 | CD | denotes | 10 |
T17318 | 97-98 | -COMMA- | denotes | , |
T17317 | 93-97 | NN | denotes | NaCl |
T17316 | 90-92 | NN | denotes | mM |
T17315 | 86-89 | CD | denotes | 400 |
T17314 | 84-85 | -COMMA- | denotes | , |
T17313 | 79-84 | NN | denotes | NP-40 |
T17312 | 77-78 | NN | denotes | % |
T17311 | 76-77 | CD | denotes | 1 |
T17310 | 74-75 | -COMMA- | denotes | , |
T17309 | 71-74 | CD | denotes | 7.5 |
T17308 | 68-70 | NN | denotes | pH |
T17307 | 62-67 | NNP | denotes | Hepes |
T17306 | 59-61 | NN | denotes | mM |
T17305 | 56-58 | CD | denotes | 20 |
T17304 | 55-56 | -LRB- | denotes | ( |
T17303 | 52-54 | NN | denotes | B2 |
T17302 | 49-51 | IN | denotes | in |
T17301 | 43-48 | VB | denotes | lyzed |
T17300 | 39-42 | VB | denotes | was |
T17299 | 32-38 | NN | denotes | pellet |
T17298 | 21-31 | VB | denotes | containing |
T17297 | 12-20 | NN | denotes | fraction |
T17296 | 4-11 | JJ | denotes | nuclear |
T17295 | 0-3 | DT | denotes | The |
T17370 | 368-369 | -RRB- | denotes | ) |
T17369 | 360-368 | NNP | denotes | Sciences |
T17368 | 355-359 | NNP | denotes | Life |
T17367 | 349-354 | NNP | denotes | Elmer |
T17366 | 342-348 | NNP | denotes | Perkin |
T17365 | 341-342 | -LRB- | denotes | ( |
T17364 | 331-340 | NN | denotes | detection |
T17363 | 327-330 | NN | denotes | ECL |
T17362 | 323-326 | CC | denotes | and |
T17361 | 314-322 | NN | denotes | blotting |
T17360 | 306-313 | JJ | denotes | western |
T17359 | 303-305 | IN | denotes | by |
T17358 | 294-302 | VB | denotes | analyzed |
T17357 | 290-293 | CC | denotes | and |
T17356 | 281-289 | NN | denotes | SDS-PAGE |
T17355 | 278-280 | IN | denotes | by |
T17354 | 268-277 | VB | denotes | separated |
T17353 | 255-267 | RB | denotes | subsequently |
T17352 | 250-254 | VB | denotes | were |
T17351 | 242-249 | NN | denotes | lysates |
T17350 | 238-241 | DT | denotes | The |
T17349 | 233-237 | NNP | denotes | 4°C. |
T17348 | 230-232 | IN | denotes | at |
T17347 | 226-229 | NN | denotes | min |
T17346 | 223-225 | CD | denotes | 15 |
T17345 | 219-222 | IN | denotes | for |
T17344 | 217-218 | -RRB- | denotes | ) |
T17343 | 207-217 | NN | denotes | inhibitors |
T17342 | 195-206 | NN | denotes | phosphatase |
T17341 | 191-194 | CC | denotes | and |
T17340 | 182-190 | NN | denotes | protease |
T17339 | 177-181 | IN | denotes | with |
T17338 | 164-176 | VB | denotes | supplemented |
T17337 | 159-163 | NN | denotes | EGTA |
T17336 | 156-158 | NN | denotes | mM |
T17335 | 152-155 | CD | denotes | 0.1 |
T17334 | 148-151 | CC | denotes | and |
T17333 | 143-147 | NN | denotes | EDTA |
T17332 | 140-142 | NN | denotes | mM |
R13070 | T17297 | T17295 | arg1Of | fraction,The |
R13071 | T17297 | T17296 | arg1Of | fraction,nuclear |
R13072 | T17297 | T17298 | arg1Of | fraction,containing |
R13073 | T17297 | T17300 | arg1Of | fraction,was |
R13074 | T17297 | T17301 | arg2Of | fraction,lyzed |
R13075 | T17299 | T17298 | arg2Of | pellet,containing |
R13076 | T17301 | T17300 | arg2Of | lyzed,was |
R13077 | T17301 | T17302 | arg1Of | lyzed,in |
R13078 | T17301 | T17304 | arg1Of | lyzed,( |
R13079 | T17301 | T17345 | arg1Of | lyzed,for |
R13080 | T17303 | T17302 | arg2Of | B2,in |
R13081 | T17307 | T17305 | arg1Of | Hepes,20 |
R13082 | T17307 | T17306 | arg1Of | Hepes,mM |
R13083 | T17309 | T17310 | arg1Of | 7.5,"," |
R13084 | T17310 | T17308 | arg1Of | ",",pH |
R13085 | T17312 | T17310 | arg2Of | %,"," |
R13086 | T17312 | T17311 | arg1Of | %,1 |
R13087 | T17313 | T17309 | arg1Of | NP-40,7.5 |
R13088 | T17313 | T17312 | arg1Of | NP-40,% |
R13089 | T17313 | T17314 | arg1Of | NP-40,"," |
R13090 | T17314 | T17318 | arg1Of | ",","," |
R13091 | T17315 | T17316 | arg1Of | 400,mM |
R13092 | T17317 | T17314 | arg2Of | NaCl,"," |
R13093 | T17317 | T17315 | arg1Of | NaCl,400 |
R13094 | T17318 | T17307 | arg1Of | ",",Hepes |
R13095 | T17318 | T17322 | arg1Of | ",","," |
R13096 | T17319 | T17320 | arg1Of | 10,mM |
R13097 | T17321 | T17318 | arg2Of | KCl,"," |
R13098 | T17321 | T17319 | arg1Of | KCl,10 |
R13099 | T17322 | T17326 | arg1Of | ",","," |
R13100 | T17323 | T17324 | arg1Of | 1,mM |
R13101 | T17325 | T17322 | arg2Of | MgCl2,"," |
R13102 | T17325 | T17323 | arg1Of | MgCl2,1 |
R13103 | T17326 | T17330 | arg1Of | ",","," |
R13104 | T17327 | T17328 | arg1Of | 20,% |
R13105 | T17329 | T17326 | arg2Of | glycerol,"," |
R13106 | T17329 | T17327 | arg1Of | glycerol,20 |
R13107 | T17330 | T17334 | arg1Of | ",",and |
R13108 | T17331 | T17332 | arg1Of | 0.5,mM |
R13109 | T17333 | T17330 | arg2Of | EDTA,"," |
R13110 | T17333 | T17331 | arg1Of | EDTA,0.5 |
R13111 | T17334 | T17304 | arg2Of | and,( |
R13112 | T17334 | T17338 | arg2Of | and,supplemented |
R13113 | T17335 | T17336 | arg1Of | 0.1,mM |
R13114 | T17337 | T17334 | arg2Of | EGTA,and |
R13115 | T17337 | T17335 | arg1Of | EGTA,0.1 |
R13116 | T17338 | T17339 | arg1Of | supplemented,with |
R13117 | T17340 | T17341 | arg1Of | protease,and |
R13118 | T17342 | T17341 | arg2Of | phosphatase,and |
R13119 | T17343 | T17339 | arg2Of | inhibitors,with |
R13120 | T17343 | T17340 | arg1Of | inhibitors,protease |
R13121 | T17343 | T17342 | arg1Of | inhibitors,phosphatase |
R13122 | T17344 | T17304 | arg3Of | ),( |
R13123 | T17347 | T17345 | arg2Of | min,for |
R13124 | T17347 | T17346 | arg1Of | min,15 |
R13125 | T17347 | T17348 | arg1Of | min,at |
R13126 | T17349 | T17348 | arg2Of | 4°C.,at |
R13127 | T17351 | T17350 | arg1Of | lysates,The |
R13128 | T17351 | T17352 | arg1Of | lysates,were |
R13129 | T17351 | T17354 | arg2Of | lysates,separated |
R13130 | T17351 | T17358 | arg2Of | lysates,analyzed |
R13131 | T17354 | T17357 | arg1Of | separated,and |
R13132 | T17356 | T17354 | arg1Of | SDS-PAGE,separated |
R13133 | T17356 | T17355 | arg2Of | SDS-PAGE,by |
R13134 | T17357 | T17300 | modOf | and,was |
R13135 | T17357 | T17352 | arg2Of | and,were |
R13136 | T17357 | T17353 | arg1Of | and,subsequently |
R13137 | T17358 | T17357 | arg2Of | analyzed,and |
R13138 | T17361 | T17362 | arg1Of | blotting,and |
R13139 | T17363 | T17362 | arg2Of | ECL,and |
R13140 | T17364 | T17358 | arg1Of | detection,analyzed |
R13141 | T17364 | T17359 | arg2Of | detection,by |
R13142 | T17364 | T17360 | arg1Of | detection,western |
R13143 | T17364 | T17361 | arg1Of | detection,blotting |
R13144 | T17364 | T17363 | arg1Of | detection,ECL |
R13145 | T17364 | T17365 | arg1Of | detection,( |
R13146 | T17369 | T17365 | arg2Of | Sciences,( |
R13147 | T17369 | T17366 | arg1Of | Sciences,Perkin |
R13148 | T17369 | T17367 | arg1Of | Sciences,Elmer |
R13149 | T17369 | T17368 | arg1Of | Sciences,Life |
R13150 | T17370 | T17365 | arg3Of | ),( |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T17170 | 195-206 | http://purl.obolibrary.org/obo/GO_0016791 | denotes | phosphatase |
GO-MF
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T17173 | 195-206 | http://purl.obolibrary.org/obo/GO_0016791 | denotes | phosphatase |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T17163 | 0-370 | Sentence | denotes | The nuclear fraction containing pellet was lyzed in B2 (20 mM Hepes pH 7.5, 1% NP-40, 400 mM NaCl, 10 mM KCl, 1 mM MgCl2, 20% glycerol, 0.5 mM EDTA and 0.1 mM EGTA supplemented with protease and phosphatase inhibitors) for 15 min at 4°C. The lysates were subsequently separated by SDS-PAGE and analyzed by western blotting and ECL detection (Perkin Elmer Life Sciences). |
T244 | 0-237 | Sentence | denotes | The nuclear fraction containing pellet was lyzed in B2 (20 mM Hepes pH 7.5, 1% NP-40, 400 mM NaCl, 10 mM KCl, 1 mM MgCl2, 20% glycerol, 0.5 mM EDTA and 0.1 mM EGTA supplemented with protease and phosphatase inhibitors) for 15 min at 4°C. |
T245 | 238-370 | Sentence | denotes | The lysates were subsequently separated by SDS-PAGE and analyzed by western blotting and ECL detection (Perkin Elmer Life Sciences). |
bionlp-st-ge-2016-test-ihmc
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T17791 | 105-108 | Entity | denotes | KCl |
T17790 | 195-217 | Entity | denotes | phosphatase inhibitors |
T17785 | 182-190 | Protein | denotes | protease |
T17784 | 56-70 | Entity | denotes | 20 mM Hepes pH |
T17780 | 152-163 | Entity | denotes | 0.1 mM EGTA |
T17779 | 195-206 | Protein | denotes | phosphatase |
T17777 | 86-97 | Entity | denotes | 400 mM NaCl |
T17766 | 62-67 | Entity | denotes | Hepes |
T17763 | 52-54 | Entity | denotes | B2 |
T17760 | 327-330 | Protein | denotes | ECL |
T17758 | 122-134 | Entity | denotes | 20% glycerol |
T17753 | 136-147 | Entity | denotes | 0.5 mM EDTA |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T17605 | 148-151 | CC | denotes | and |
T17604 | 143-147 | NNP | denotes | EDTA |
T17603 | 140-142 | NNP | denotes | mM |
T17602 | 136-139 | CD | denotes | 0.5 |
T17601 | 134-135 | , | denotes | , |
T17600 | 126-134 | NN | denotes | glycerol |
T17599 | 124-125 | NN | denotes | % |
T17598 | 122-124 | CD | denotes | 20 |
T17597 | 120-121 | , | denotes | , |
T17596 | 115-120 | NNP | denotes | MgCl2 |
T17595 | 112-114 | NNP | denotes | mM |
T17594 | 110-111 | CD | denotes | 1 |
T17593 | 108-109 | , | denotes | , |
T17592 | 105-108 | NNP | denotes | KCl |
T17591 | 102-104 | NNP | denotes | mM |
T17590 | 99-101 | CD | denotes | 10 |
T17589 | 97-98 | , | denotes | , |
T17588 | 93-97 | NNP | denotes | NaCl |
T17587 | 90-92 | NNP | denotes | mM |
T17586 | 86-89 | CD | denotes | 400 |
T17585 | 84-85 | , | denotes | , |
T17584 | 79-84 | NN | denotes | NP-40 |
T17583 | 77-78 | NN | denotes | % |
T17582 | 76-77 | CD | denotes | 1 |
T17581 | 74-75 | , | denotes | , |
T17580 | 71-74 | CD | denotes | 7.5 |
T17579 | 68-70 | NNP | denotes | pH |
T17578 | 62-67 | NNP | denotes | Hepes |
T17577 | 59-61 | NNP | denotes | mM |
T17576 | 56-58 | CD | denotes | 20 |
T17575 | 55-56 | -LRB- | denotes | ( |
T17574 | 52-54 | NN | denotes | B2 |
T17573 | 49-51 | IN | denotes | in |
T17572 | 43-48 | VBN | denotes | lyzed |
T17571 | 39-42 | VBD | denotes | was |
T17570 | 32-38 | NN | denotes | pellet |
T17569 | 21-31 | VBG | denotes | containing |
T17568 | 12-20 | NN | denotes | fraction |
T17567 | 4-11 | JJ | denotes | nuclear |
T17566 | 0-3 | DT | denotes | The |
T17645 | 369-370 | . | denotes | . |
T17644 | 368-369 | -RRB- | denotes | ) |
T17643 | 360-368 | NNPS | denotes | Sciences |
T17642 | 355-359 | NNP | denotes | Life |
T17641 | 349-354 | NNP | denotes | Elmer |
T17640 | 342-348 | NNP | denotes | Perkin |
T17639 | 341-342 | -LRB- | denotes | ( |
T17638 | 331-340 | NN | denotes | detection |
T17637 | 327-330 | NNP | denotes | ECL |
T17636 | 323-326 | CC | denotes | and |
T17635 | 314-322 | VBG | denotes | blotting |
T17634 | 306-313 | JJ | denotes | western |
T17633 | 303-305 | IN | denotes | by |
T17632 | 294-302 | VBN | denotes | analyzed |
T17631 | 290-293 | CC | denotes | and |
T17630 | 281-289 | NNP | denotes | SDS-PAGE |
T17629 | 278-280 | IN | denotes | by |
T17628 | 268-277 | VBN | denotes | separated |
T17627 | 255-267 | RB | denotes | subsequently |
T17626 | 250-254 | VBD | denotes | were |
T17625 | 242-249 | NNS | denotes | lysates |
T17624 | 238-241 | DT | denotes | The |
T17623 | 236-237 | . | denotes | . |
T17622 | 235-236 | NNP | denotes | C |
T17621 | 234-235 | CD | denotes | ° |
T17620 | 233-234 | CD | denotes | 4 |
T17619 | 230-232 | IN | denotes | at |
T17618 | 226-229 | NN | denotes | min |
T17617 | 223-225 | CD | denotes | 15 |
T17616 | 219-222 | IN | denotes | for |
T17615 | 217-218 | -RRB- | denotes | ) |
T17614 | 207-217 | NNS | denotes | inhibitors |
T17613 | 195-206 | NN | denotes | phosphatase |
T17612 | 191-194 | CC | denotes | and |
T17611 | 182-190 | NN | denotes | protease |
T17610 | 177-181 | IN | denotes | with |
T17609 | 164-176 | VBD | denotes | supplemented |
T17608 | 159-163 | NNP | denotes | EGTA |
T17607 | 156-158 | NNP | denotes | mM |
T17606 | 152-155 | CD | denotes | 0.1 |
R13350 | T17566 | T17568 | det | The,fraction |
R13351 | T17567 | T17568 | amod | nuclear,fraction |
R13352 | T17568 | T17571 | nsubj | fraction,was |
R13353 | T17569 | T17568 | acl | containing,fraction |
R13354 | T17570 | T17569 | dobj | pellet,containing |
R13355 | T17571 | T17572 | auxpass | was,lyzed |
R13356 | T17572 | T17572 | ROOT | lyzed,lyzed |
R13357 | T17573 | T17572 | prep | in,lyzed |
R13358 | T17574 | T17573 | pobj | B2,in |
R13359 | T17575 | T17572 | punct | (,lyzed |
R13360 | T17576 | T17579 | nummod | 20,pH |
R13361 | T17577 | T17579 | compound | mM,pH |
R13362 | T17578 | T17579 | compound | Hepes,pH |
R13363 | T17579 | T17572 | appos | pH,lyzed |
R13364 | T17580 | T17579 | nummod | 7.5,pH |
R13365 | T17581 | T17579 | punct | ",",pH |
R13366 | T17582 | T17583 | nummod | 1,% |
R13367 | T17583 | T17584 | compound | %,NP-40 |
R13368 | T17584 | T17579 | appos | NP-40,pH |
R13369 | T17585 | T17584 | punct | ",",NP-40 |
R13370 | T17586 | T17588 | nummod | 400,NaCl |
R13371 | T17587 | T17588 | compound | mM,NaCl |
R13372 | T17588 | T17609 | nsubj | NaCl,supplemented |
R13373 | T17589 | T17588 | punct | ",",NaCl |
R13374 | T17590 | T17592 | nummod | 10,KCl |
R13375 | T17591 | T17592 | compound | mM,KCl |
R13376 | T17592 | T17588 | appos | KCl,NaCl |
R13377 | T17593 | T17592 | punct | ",",KCl |
R13378 | T17594 | T17596 | nummod | 1,MgCl2 |
R13379 | T17595 | T17596 | compound | mM,MgCl2 |
R13380 | T17596 | T17588 | appos | MgCl2,NaCl |
R13381 | T17597 | T17596 | punct | ",",MgCl2 |
R13382 | T17598 | T17599 | nummod | 20,% |
R13383 | T17599 | T17600 | compound | %,glycerol |
R13384 | T17600 | T17596 | appos | glycerol,MgCl2 |
R13385 | T17601 | T17596 | punct | ",",MgCl2 |
R13386 | T17602 | T17604 | nummod | 0.5,EDTA |
R13387 | T17603 | T17604 | compound | mM,EDTA |
R13388 | T17604 | T17596 | conj | EDTA,MgCl2 |
R13389 | T17605 | T17604 | cc | and,EDTA |
R13390 | T17606 | T17608 | nummod | 0.1,EGTA |
R13391 | T17607 | T17608 | compound | mM,EGTA |
R13392 | T17608 | T17604 | conj | EGTA,EDTA |
R13393 | T17609 | T17609 | ROOT | supplemented,supplemented |
R13394 | T17610 | T17609 | prep | with,supplemented |
R13395 | T17611 | T17614 | nmod | protease,inhibitors |
R13396 | T17612 | T17611 | cc | and,protease |
R13397 | T17613 | T17611 | conj | phosphatase,protease |
R13398 | T17614 | T17610 | pobj | inhibitors,with |
R13399 | T17615 | T17609 | punct | ),supplemented |
R13400 | T17616 | T17609 | prep | for,supplemented |
R13401 | T17617 | T17618 | nummod | 15,min |
R13402 | T17618 | T17616 | pobj | min,for |
R13403 | T17619 | T17609 | prep | at,supplemented |
R13404 | T17620 | T17621 | nummod | 4,° |
R13405 | T17621 | T17619 | pobj | °,at |
R13406 | T17622 | T17609 | conj | C,supplemented |
R13407 | T17623 | T17609 | punct | .,supplemented |
R13408 | T17624 | T17625 | det | The,lysates |
R13409 | T17625 | T17628 | nsubjpass | lysates,separated |
R13410 | T17626 | T17628 | auxpass | were,separated |
R13411 | T17627 | T17628 | advmod | subsequently,separated |
R13412 | T17628 | T17628 | ROOT | separated,separated |
R13413 | T17629 | T17628 | agent | by,separated |
R13414 | T17630 | T17629 | pobj | SDS-PAGE,by |
R13415 | T17631 | T17628 | cc | and,separated |
R13416 | T17632 | T17628 | conj | analyzed,separated |
R13417 | T17633 | T17632 | agent | by,analyzed |
R13418 | T17634 | T17635 | amod | western,blotting |
R13419 | T17635 | T17633 | pobj | blotting,by |
R13420 | T17636 | T17635 | cc | and,blotting |
R13421 | T17637 | T17638 | compound | ECL,detection |
R13422 | T17638 | T17635 | conj | detection,blotting |
R13423 | T17639 | T17643 | punct | (,Sciences |
R13424 | T17640 | T17643 | compound | Perkin,Sciences |
R13425 | T17641 | T17643 | compound | Elmer,Sciences |
R13426 | T17642 | T17643 | compound | Life,Sciences |
R13427 | T17643 | T17638 | appos | Sciences,detection |
R13428 | T17644 | T17638 | punct | ),detection |
R13429 | T17645 | T17628 | punct | .,separated |
bionlp-st-ge-2016-test-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T17727 | 156-206 | Protein | denotes | mM EGTA supplemented with protease and phosphatase |