PMC:3291650 / 36231-36451
Annnotations
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16630 | 218-220 | NNP | denotes | T. |
| T16629 | 215-217 | IN | denotes | by |
| T16628 | 206-214 | VB | denotes | provided |
| T16627 | 199-205 | RB | denotes | kindly |
| T16626 | 198-199 | -LRB- | denotes | ( |
| T16625 | 185-197 | NN | denotes | pEF-HA-IRF-7 |
| T16624 | 183-184 | -COMMA- | denotes | , |
| T16623 | 182-183 | -RRB- | denotes | ) |
| T16622 | 178-182 | CD | denotes | 6517 |
| T16621 | 173-177 | NN | denotes | LMBP |
| T16620 | 172-173 | -LRB- | denotes | ( |
| T16619 | 152-171 | NN | denotes | pCAGGS-E-RIG-I-CARD |
| T16618 | 150-151 | -COMMA- | denotes | , |
| T16617 | 149-150 | -RRB- | denotes | ) |
| T16616 | 145-149 | CD | denotes | 3778 |
| T16615 | 140-144 | NN | denotes | LMBP |
| T16614 | 139-140 | -LRB- | denotes | ( |
| T16613 | 125-138 | NN | denotes | pCAGGS-E-hA20 |
| T16612 | 124-125 | -LRB- | denotes | ( |
| T16611 | 116-123 | NN | denotes | vectors |
| T16610 | 105-115 | NN | denotes | expression |
| T16609 | 96-104 | JJ | denotes | specific |
| T16608 | 91-95 | IN | denotes | with |
| T16607 | 84-90 | NN | denotes | method |
| T16606 | 71-83 | NN | denotes | transfection |
| T16605 | 59-70 | VB | denotes | precipitate |
| T16604 | 49-58 | NN | denotes | phosphate |
| T16603 | 41-48 | NN | denotes | calcium |
| T16602 | 37-40 | DT | denotes | the |
| T16601 | 31-36 | VB | denotes | using |
| T16600 | 19-30 | VB | denotes | transfected |
| T16599 | 14-18 | VB | denotes | were |
| T16598 | 8-13 | NN | denotes | cells |
| T16597 | 0-7 | NN | denotes | HEK293T |
| R12454 | T16598 | T16597 | arg1Of | cells,HEK293T |
| R12455 | T16598 | T16599 | arg1Of | cells,were |
| R12456 | T16598 | T16600 | arg2Of | cells,transfected |
| R12457 | T16600 | T16599 | arg2Of | transfected,were |
| R12458 | T16600 | T16601 | modOf | transfected,using |
| R12459 | T16604 | T16601 | arg2Of | phosphate,using |
| R12460 | T16604 | T16602 | arg1Of | phosphate,the |
| R12461 | T16604 | T16603 | arg1Of | phosphate,calcium |
| R12462 | T16607 | T16605 | arg2Of | method,precipitate |
| R12463 | T16607 | T16606 | arg1Of | method,transfection |
| R12464 | T16607 | T16608 | arg1Of | method,with |
| R12465 | T16611 | T16608 | arg2Of | vectors,with |
| R12466 | T16611 | T16609 | arg1Of | vectors,specific |
| R12467 | T16611 | T16610 | arg1Of | vectors,expression |
| R12468 | T16613 | T16614 | arg1Of | pCAGGS-E-hA20,( |
| R12469 | T16613 | T16618 | arg1Of | pCAGGS-E-hA20,"," |
| R12470 | T16615 | T16614 | arg2Of | LMBP,( |
| R12471 | T16615 | T16616 | arg1Of | LMBP,3778 |
| R12472 | T16617 | T16614 | arg3Of | ),( |
| R12473 | T16618 | T16624 | arg1Of | ",","," |
| R12474 | T16619 | T16618 | arg2Of | pCAGGS-E-RIG-I-CARD,"," |
| R12475 | T16619 | T16620 | arg1Of | pCAGGS-E-RIG-I-CARD,( |
| R12476 | T16621 | T16620 | arg2Of | LMBP,( |
| R12477 | T16621 | T16622 | arg1Of | LMBP,6517 |
| R12478 | T16623 | T16620 | arg3Of | ),( |
| R12479 | T16624 | T16612 | arg2Of | ",",( |
| R12480 | T16625 | T16624 | arg2Of | pEF-HA-IRF-7,"," |
| R12481 | T16628 | T16627 | arg1Of | provided,kindly |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T17077 | 192-197 | http://www.uniprot.org/uniprot/Q92985 | denotes | IRF-7 |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16561 | 8-13 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T232 | 0-220 | Sentence | denotes | HEK293T cells were transfected using the calcium phosphate precipitate transfection method with specific expression vectors (pCAGGS-E-hA20 (LMBP 3778), pCAGGS-E-RIG-I-CARD (LMBP 6517), pEF-HA-IRF-7 (kindly provided by T. |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T17134 | 105-115 | Gene_expression | denotes | expression |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T17088 | 105-115 | Gene_expression | denotes | expression |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T17148 | 37-58 | Entity | denotes | the calcium phosphate |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16883 | 218-220 | NNP | denotes | T. |
| T16882 | 215-217 | IN | denotes | by |
| T16881 | 206-214 | VBN | denotes | provided |
| T16880 | 199-205 | RB | denotes | kindly |
| T16879 | 198-199 | -LRB- | denotes | ( |
| T16878 | 185-197 | NNP | denotes | pEF-HA-IRF-7 |
| T16877 | 183-184 | , | denotes | , |
| T16876 | 182-183 | -RRB- | denotes | ) |
| T16875 | 178-182 | CD | denotes | 6517 |
| T16874 | 173-177 | NNP | denotes | LMBP |
| T16873 | 172-173 | -LRB- | denotes | ( |
| T16872 | 152-171 | NNP | denotes | pCAGGS-E-RIG-I-CARD |
| T16871 | 150-151 | , | denotes | , |
| T16870 | 149-150 | -RRB- | denotes | ) |
| T16869 | 145-149 | CD | denotes | 3778 |
| T16868 | 140-144 | NNP | denotes | LMBP |
| T16867 | 139-140 | -LRB- | denotes | ( |
| T16866 | 125-138 | NN | denotes | pCAGGS-E-hA20 |
| T16865 | 124-125 | -LRB- | denotes | ( |
| T16864 | 116-123 | NNS | denotes | vectors |
| T16863 | 105-115 | NN | denotes | expression |
| T16862 | 96-104 | JJ | denotes | specific |
| T16861 | 91-95 | IN | denotes | with |
| T16860 | 84-90 | NN | denotes | method |
| T16859 | 71-83 | NN | denotes | transfection |
| T16858 | 59-70 | NN | denotes | precipitate |
| T16857 | 49-58 | NN | denotes | phosphate |
| T16856 | 41-48 | NN | denotes | calcium |
| T16855 | 37-40 | DT | denotes | the |
| T16854 | 31-36 | VBG | denotes | using |
| T16853 | 19-30 | VBN | denotes | transfected |
| T16852 | 14-18 | VBD | denotes | were |
| T16851 | 8-13 | NNS | denotes | cells |
| T16850 | 0-7 | CD | denotes | HEK293T |
| R12698 | T16850 | T16851 | nummod | HEK293T,cells |
| R12699 | T16851 | T16853 | nsubjpass | cells,transfected |
| R12700 | T16852 | T16853 | auxpass | were,transfected |
| R12701 | T16853 | T16853 | ROOT | transfected,transfected |
| R12702 | T16854 | T16853 | advcl | using,transfected |
| R12703 | T16855 | T16860 | det | the,method |
| R12704 | T16856 | T16858 | nsubj | calcium,precipitate |
| R12705 | T16857 | T16858 | compound | phosphate,precipitate |
| R12706 | T16858 | T16860 | compound | precipitate,method |
| R12707 | T16859 | T16860 | compound | transfection,method |
| R12708 | T16860 | T16854 | dobj | method,using |
| R12709 | T16861 | T16854 | prep | with,using |
| R12710 | T16862 | T16864 | amod | specific,vectors |
| R12711 | T16863 | T16864 | compound | expression,vectors |
| R12712 | T16864 | T16861 | pobj | vectors,with |
| R12713 | T16865 | T16866 | punct | (,pCAGGS-E-hA20 |
| R12714 | T16866 | T16864 | appos | pCAGGS-E-hA20,vectors |
| R12715 | T16867 | T16868 | punct | (,LMBP |
| R12716 | T16868 | T16866 | dep | LMBP,pCAGGS-E-hA20 |
| R12717 | T16869 | T16868 | nummod | 3778,LMBP |
| R12718 | T16870 | T16868 | punct | ),LMBP |
| R12719 | T16871 | T16868 | punct | ",",LMBP |
| R12720 | T16872 | T16868 | conj | pCAGGS-E-RIG-I-CARD,LMBP |
| R12721 | T16873 | T16872 | punct | (,pCAGGS-E-RIG-I-CARD |
| R12722 | T16874 | T16872 | appos | LMBP,pCAGGS-E-RIG-I-CARD |
| R12723 | T16875 | T16874 | nummod | 6517,LMBP |
| R12724 | T16876 | T16872 | punct | ),pCAGGS-E-RIG-I-CARD |
| R12725 | T16877 | T16872 | punct | ",",pCAGGS-E-RIG-I-CARD |
| R12726 | T16878 | T16872 | conj | pEF-HA-IRF-7,pCAGGS-E-RIG-I-CARD |
| R12727 | T16879 | T16881 | punct | (,provided |
| R12728 | T16880 | T16881 | advmod | kindly,provided |
| R12729 | T16881 | T16868 | parataxis | provided,LMBP |
| R12730 | T16882 | T16881 | agent | by,provided |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T17110 | 105-115 | Gene_expression | denotes | expression |
| T17109 | 105-115 | Gene_expression | denotes | expression |
| T17108 | 105-115 | Gene_expression | denotes | expression |
| T17107 | 105-115 | Gene_expression | denotes | expression |
| T17106 | 105-115 | Gene_expression | denotes | expression |
| T17105 | 105-115 | Gene_expression | denotes | expression |
| T17104 | 105-115 | Gene_expression | denotes | expression |
| T17103 | 105-115 | Gene_expression | denotes | expression |
| T17102 | 105-115 | Gene_expression | denotes | expression |
| T17093 | 185-197 | Protein | denotes | pEF-HA-IRF-7 |
| R12929 | T17093 | T17102 | themeOf | pEF-HA-IRF-7,expression |