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PMC:3291650 / 36096-36928 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T16539 456-460 Protein denotes IRF7
T16538 450-454 Protein denotes IRF3
T16537 456-460 Protein denotes IRF7
T16536 450-454 Protein denotes IRF3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T16711 805-831 VB denotes //bccm.belspo.be/index.php
T16710 804-805 -COLON- denotes :
T16709 800-804 NN denotes http
T16708 791-799 NN denotes databank
T16707 783-790 NN denotes plasmid
T16706 773-782 NN denotes BCCM-LMBP
T16705 769-772 DT denotes the
T16704 766-768 IN denotes at
T16703 761-765 NN denotes maps
T16702 752-760 NN denotes sequence
T16701 743-751 JJ denotes detailed
T16700 738-742 IN denotes with
T16699 732-737 IN denotes along
T16698 722-731 VB denotes presented
T16697 718-721 VB denotes are
T16696 709-717 NN denotes plasmids
T16695 706-708 IN denotes of
T16694 698-705 NN denotes Details
T16693 683-696 NN denotes normalization
T16692 672-682 NN denotes efficiency
T16691 659-671 NN denotes transfection
T16690 655-658 IN denotes for
T16689 653-654 -RRB- denotes )
T16688 645-653 NN denotes LMBP4341
T16687 644-645 -LRB- denotes (
T16686 632-643 NN denotes pACTbetagal
T16685 628-631 CC denotes and
T16684 626-627 -COMMA- denotes ,
T16683 625-626 -RRB- denotes )
T16682 619-625 NNP denotes Canada
T16681 617-618 -COMMA- denotes ,
T16680 611-617 NNP denotes Quebec
T16679 609-610 -COMMA- denotes ,
T16678 601-609 NNP denotes Montreal
T16677 599-600 -COMMA- denotes ,
T16676 589-599 NNP denotes University
T16675 582-588 NNP denotes McGill
T16674 580-581 -COMMA- denotes ,
T16673 573-580 NNP denotes Hiscott
T16672 570-572 NNP denotes J.
T16671 567-569 IN denotes by
T16670 558-566 VB denotes provided
T16669 551-557 RB denotes kindly
T16668 550-551 -LRB- denotes (
T16667 535-549 NN denotes pGL3-IFNα4-luc
T16666 533-534 -COMMA- denotes ,
T16665 532-533 -RRB- denotes )
T16664 524-532 NN denotes LMBP4011
T16663 523-524 -LRB- denotes (
T16662 513-522 NN denotes pISRE-luc
T16661 511-512 -COMMA- denotes ,
T16660 510-511 -RRB- denotes )
T16659 502-510 NN denotes LMBP3248
T16658 501-502 -LRB- denotes (
T16657 493-500 NN denotes pConLuc
T16656 480-492 RB denotes respectively
T16655 479-480 -LRB- denotes (
T16654 470-478 NN denotes plasmids
T16653 461-469 NN denotes reporter
T16652 456-460 NN denotes IRF7
T16651 454-455 -COMMA- denotes ,
T16650 450-454 NN denotes IRF3
T16649 448-449 -COMMA- denotes ,
T16648 443-448 NN denotes NF-κB
T16647 441-442 -COMMA- denotes ,
T16646 440-441 -RRB- denotes )
T16645 439-440 -RRB- denotes )
T16644 434-439 NNP denotes Tokyo
T16643 431-433 IN denotes of
T16642 420-430 NNP denotes University
T16641 418-419 -COMMA- denotes ,
T16640 410-418 NNP denotes Medicine
T16639 407-409 IN denotes of
T16638 399-406 NNP denotes Faculty
T16637 395-398 CC denotes and
T16636 386-394 NNP denotes Medicine
T16635 383-385 IN denotes of
T16634 376-382 NNP denotes School
T16633 367-375 NNP denotes Graduate
T16632 365-366 -COMMA- denotes ,
T16631 356-365 NNP denotes Taniguchi
T16630 353-355 NNP denotes T.
T16629 350-352 IN denotes by
T16628 341-349 VB denotes provided
T16627 334-340 RB denotes kindly
T16626 333-334 -LRB- denotes (
T16625 320-332 NN denotes pEF-HA-IRF-7
T16624 318-319 -COMMA- denotes ,
T16623 317-318 -RRB- denotes )
T16622 313-317 CD denotes 6517
T16621 308-312 NN denotes LMBP
T16620 307-308 -LRB- denotes (
T16619 287-306 NN denotes pCAGGS-E-RIG-I-CARD
T16618 285-286 -COMMA- denotes ,
T16617 284-285 -RRB- denotes )
T16616 280-284 CD denotes 3778
T16615 275-279 NN denotes LMBP
T16614 274-275 -LRB- denotes (
T16613 260-273 NN denotes pCAGGS-E-hA20
T16612 259-260 -LRB- denotes (
T16576 34-36 IN denotes in
T16575 28-33 VB denotes grown
T16574 23-27 VB denotes were
T16573 17-22 NN denotes cells
T16572 12-16 NN denotes MDCK
T16571 8-11 CC denotes and
T16570 0-7 NN denotes HEK293T
T16611 251-258 NN denotes vectors
T16610 240-250 NN denotes expression
T16609 231-239 JJ denotes specific
T16608 226-230 IN denotes with
T16607 219-225 NN denotes method
T16606 206-218 NN denotes transfection
T16605 194-205 VB denotes precipitate
T16604 184-193 NN denotes phosphate
T16603 176-183 NN denotes calcium
T16602 172-175 DT denotes the
T16601 166-171 VB denotes using
T16600 154-165 VB denotes transfected
T16599 149-153 VB denotes were
T16598 143-148 NN denotes cells
T16597 135-142 NN denotes HEK293T
T16596 122-133 NN denotes antibiotics
T16595 118-121 CC denotes and
T16594 109-117 NN denotes pyruvate
T16593 102-108 NN denotes sodium
T16592 99-101 NN denotes mM
T16591 95-98 CD denotes 0.4
T16590 93-94 -COMMA- denotes ,
T16589 82-93 NN denotes L-glutamine
T16588 79-81 NN denotes mM
T16587 77-78 CD denotes 2
T16586 75-76 -COMMA- denotes ,
T16585 72-75 NN denotes FCS
T16584 70-71 NN denotes %
T16583 68-70 CD denotes 10
T16582 63-67 IN denotes with
T16581 50-62 VB denotes supplemented
T16580 48-49 -RRB- denotes )
T16579 43-48 NN denotes Gibco
T16578 42-43 -LRB- denotes (
T16577 37-41 NN denotes DMEM
R12426 T16570 T16571 arg1Of HEK293T,and
R12427 T16572 T16571 arg2Of MDCK,and
R12428 T16573 T16570 arg1Of cells,HEK293T
R12429 T16573 T16572 arg1Of cells,MDCK
R12430 T16573 T16574 arg1Of cells,were
R12431 T16573 T16575 arg2Of cells,grown
R12432 T16575 T16574 arg2Of grown,were
R12433 T16575 T16576 arg1Of grown,in
R12434 T16577 T16576 arg2Of DMEM,in
R12435 T16577 T16578 arg1Of DMEM,(
R12436 T16577 T16581 arg2Of DMEM,supplemented
R12437 T16579 T16578 arg2Of Gibco,(
R12438 T16580 T16578 arg3Of ),(
R12439 T16581 T16582 arg1Of supplemented,with
R12440 T16583 T16584 arg1Of 10,%
R12441 T16585 T16583 arg1Of FCS,10
R12442 T16585 T16586 arg1Of FCS,","
R12443 T16586 T16590 arg1Of ",",","
R12444 T16587 T16588 arg1Of 2,mM
R12445 T16589 T16586 arg2Of L-glutamine,","
R12446 T16589 T16587 arg1Of L-glutamine,2
R12447 T16590 T16595 arg1Of ",",and
R12448 T16591 T16592 arg1Of 0.4,mM
R12449 T16594 T16590 arg2Of pyruvate,","
R12450 T16594 T16591 arg1Of pyruvate,0.4
R12451 T16594 T16593 arg1Of pyruvate,sodium
R12452 T16595 T16582 arg2Of and,with
R12453 T16596 T16595 arg2Of antibiotics,and
R12454 T16598 T16597 arg1Of cells,HEK293T
R12455 T16598 T16599 arg1Of cells,were
R12456 T16598 T16600 arg2Of cells,transfected
R12457 T16600 T16599 arg2Of transfected,were
R12458 T16600 T16601 modOf transfected,using
R12459 T16604 T16601 arg2Of phosphate,using
R12460 T16604 T16602 arg1Of phosphate,the
R12461 T16604 T16603 arg1Of phosphate,calcium
R12462 T16607 T16605 arg2Of method,precipitate
R12463 T16607 T16606 arg1Of method,transfection
R12464 T16607 T16608 arg1Of method,with
R12465 T16611 T16608 arg2Of vectors,with
R12466 T16611 T16609 arg1Of vectors,specific
R12467 T16611 T16610 arg1Of vectors,expression
R12468 T16613 T16614 arg1Of pCAGGS-E-hA20,(
R12469 T16613 T16618 arg1Of pCAGGS-E-hA20,","
R12470 T16615 T16614 arg2Of LMBP,(
R12471 T16615 T16616 arg1Of LMBP,3778
R12472 T16617 T16614 arg3Of ),(
R12473 T16618 T16624 arg1Of ",",","
R12474 T16619 T16618 arg2Of pCAGGS-E-RIG-I-CARD,","
R12475 T16619 T16620 arg1Of pCAGGS-E-RIG-I-CARD,(
R12476 T16621 T16620 arg2Of LMBP,(
R12477 T16621 T16622 arg1Of LMBP,6517
R12478 T16623 T16620 arg3Of ),(
R12479 T16624 T16612 arg2Of ",",(
R12480 T16625 T16624 arg2Of pEF-HA-IRF-7,","
R12481 T16628 T16627 arg1Of provided,kindly
R12482 T16631 T16630 arg1Of Taniguchi,T.
R12483 T16631 T16632 arg1Of Taniguchi,","
R12484 T16632 T16637 arg1Of ",",and
R12485 T16634 T16632 arg2Of School,","
R12486 T16634 T16633 arg1Of School,Graduate
R12487 T16634 T16635 arg1Of School,of
R12488 T16636 T16635 arg2Of Medicine,of
R12489 T16637 T16628 arg1Of and,provided
R12490 T16637 T16629 arg2Of and,by
R12491 T16638 T16637 arg2Of Faculty,and
R12492 T16638 T16639 arg1Of Faculty,of
R12493 T16640 T16639 arg2Of Medicine,of
R12494 T16642 T16641 arg2Of University,","
R12495 T16642 T16643 arg1Of University,of
R12496 T16644 T16643 arg2Of Tokyo,of
R12497 T16648 T16649 arg1Of NF-κB,","
R12498 T16649 T16651 arg1Of ",",","
R12499 T16650 T16649 arg2Of IRF3,","
R12500 T16654 T16651 arg2Of plasmids,","
R12501 T16654 T16652 arg1Of plasmids,IRF7
R12502 T16654 T16653 arg1Of plasmids,reporter
R12503 T16657 T16658 arg1Of pConLuc,(
R12504 T16657 T16661 arg1Of pConLuc,","
R12505 T16659 T16658 arg2Of LMBP3248,(
R12506 T16660 T16658 arg3Of ),(
R12507 T16661 T16655 arg2Of ",",(
R12508 T16661 T16656 arg1Of ",",respectively
R12509 T16661 T16666 arg1Of ",",","
R12510 T16662 T16661 arg2Of pISRE-luc,","
R12511 T16662 T16663 arg1Of pISRE-luc,(
R12512 T16664 T16663 arg2Of LMBP4011,(
R12513 T16665 T16663 arg3Of ),(
R12514 T16667 T16668 arg1Of pGL3-IFNα4-luc,(
R12515 T16667 T16685 arg1Of pGL3-IFNα4-luc,and
R12516 T16670 T16668 arg2Of provided,(
R12517 T16670 T16669 arg1Of provided,kindly
R12518 T16673 T16672 arg1Of Hiscott,J.
R12519 T16673 T16674 arg1Of Hiscott,","
R12520 T16674 T16677 arg1Of ",",","
R12521 T16676 T16674 arg2Of University,","
R12522 T16676 T16675 arg1Of University,McGill
R12523 T16677 T16679 arg1Of ",",","
R12524 T16678 T16677 arg2Of Montreal,","
R12525 T16679 T16670 arg1Of ",",provided
R12526 T16679 T16671 arg2Of ",",by
R12527 T16679 T16681 arg1Of ",",","
R12528 T16680 T16679 arg2Of Quebec,","
R12529 T16682 T16681 arg2Of Canada,","
R12530 T16683 T16668 arg3Of ),(
R12531 T16685 T16666 arg2Of and,","
R12532 T16685 T16684 arg1Of and,","
R12533 T16686 T16685 arg2Of pACTbetagal,and
R12534 T16686 T16687 arg1Of pACTbetagal,(
R12535 T16688 T16687 arg2Of LMBP4341,(
R12536 T16689 T16687 arg3Of ),(
R12537 T16693 T16690 arg2Of normalization,for
R12538 T16693 T16691 arg1Of normalization,transfection
R12539 T16693 T16692 arg1Of normalization,efficiency
R12540 T16694 T16695 arg1Of Details,of
R12541 T16694 T16697 arg1Of Details,are
R12542 T16694 T16698 arg2Of Details,presented
R12543 T16696 T16695 arg2Of plasmids,of
R12544 T16698 T16697 arg2Of presented,are
R12545 T16698 T16699 arg1Of presented,along
R12546 T16698 T16704 arg1Of presented,at
R12547 T16698 T16710 arg1Of presented,:
R12548 T16698 T16711 arg1Of presented,//bccm.belspo.be/index.php
R12549 T16699 T16700 arg1Of along,with
R12550 T16703 T16700 arg2Of maps,with
R12551 T16703 T16701 arg1Of maps,detailed
R12552 T16703 T16702 arg1Of maps,sequence
R12553 T16709 T16704 arg2Of http,at
R12554 T16709 T16705 arg1Of http,the
R12555 T16709 T16706 arg1Of http,BCCM-LMBP
R12556 T16709 T16707 arg1Of http,plasmid
R12557 T16709 T16708 arg1Of http,databank

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T16554 456-460 Protein denotes IRF7
T16553 450-454 Protein denotes IRF3

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T17079 450-454 http://www.uniprot.org/uniprot/Q14653 denotes IRF3
T17078 456-460 http://www.uniprot.org/uniprot/Q92985 denotes IRF7
T17077 327-332 http://www.uniprot.org/uniprot/Q92985 denotes IRF-7

GO-CC

Id Subject Object Predicate Lexical cue
T16561 143-148 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T16560 17-22 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T16546 698-832 Sentence denotes Details of plasmids are presented along with detailed sequence maps at the BCCM-LMBP plasmid databank http://bccm.belspo.be/index.php.
T16545 135-697 Sentence denotes HEK293T cells were transfected using the calcium phosphate precipitate transfection method with specific expression vectors (pCAGGS-E-hA20 (LMBP 3778), pCAGGS-E-RIG-I-CARD (LMBP 6517), pEF-HA-IRF-7 (kindly provided by T. Taniguchi, Graduate School of Medicine and Faculty of Medicine, University of Tokyo)), NF-κB, IRF3, IRF7 reporter plasmids (respectively pConLuc (LMBP3248), pISRE-luc (LMBP4011), pGL3-IFNα4-luc (kindly provided by J. Hiscott, McGill University, Montreal, Quebec, Canada), and pACTbetagal (LMBP4341) for transfection efficiency normalization.
T16544 0-134 Sentence denotes HEK293T and MDCK cells were grown in DMEM (Gibco) supplemented with 10% FCS, 2 mM L-glutamine, 0.4 mM sodium pyruvate and antibiotics.
T231 0-134 Sentence denotes HEK293T and MDCK cells were grown in DMEM (Gibco) supplemented with 10% FCS, 2 mM L-glutamine, 0.4 mM sodium pyruvate and antibiotics.
T232 135-355 Sentence denotes HEK293T cells were transfected using the calcium phosphate precipitate transfection method with specific expression vectors (pCAGGS-E-hA20 (LMBP 3778), pCAGGS-E-RIG-I-CARD (LMBP 6517), pEF-HA-IRF-7 (kindly provided by T.
T233 356-572 Sentence denotes Taniguchi, Graduate School of Medicine and Faculty of Medicine, University of Tokyo)), NF-κB, IRF3, IRF7 reporter plasmids (respectively pConLuc (LMBP3248), pISRE-luc (LMBP4011), pGL3-IFNα4-luc (kindly provided by J.
T234 573-697 Sentence denotes Hiscott, McGill University, Montreal, Quebec, Canada), and pACTbetagal (LMBP4341) for transfection efficiency normalization.
T235 698-832 Sentence denotes Details of plasmids are presented along with detailed sequence maps at the BCCM-LMBP plasmid databank http://bccm.belspo.be/index.php.

simple1

Id Subject Object Predicate Lexical cue
T16566 456-460 Protein denotes IRF7
T16565 450-454 Protein denotes IRF3

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T17134 240-250 Gene_expression denotes expression
T17133 456-460 Protein denotes IRF7
T17132 450-454 Protein denotes IRF3
R12947 T17132 T17134 themeOf IRF3,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T17083 456-460 Protein denotes IRF7
T17082 450-454 Protein denotes IRF3

DLUT931

Id Subject Object Predicate Lexical cue
T17088 240-250 Gene_expression denotes expression
T17087 456-460 Protein denotes IRF7
T17086 450-454 Protein denotes IRF3
R12925 T17086 T17088 themeOf IRF3,expression
R12926 T17087 T17088 themeOf IRF7,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T17140 386-394 Entity denotes Medicine
T17138 77-93 Entity denotes 2 mM L-glutamine
T17136 456-460 Protein denotes IRF7
T17153 632-654 Protein denotes pACTbetagal (LMBP4341)
T17151 443-455 Protein denotes NF-κB, IRF3,
T17149 633-636 Protein denotes ACT
T17148 172-193 Entity denotes the calcium phosphate
T17147 68-117 Entity denotes 10% FCS, 2 mM L-glutamine, 0.4 mM sodium pyruvate
T17146 410-418 Entity denotes Medicine
T17144 450-454 Protein denotes IRF3

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16964 831-832 . denotes .
T16963 800-831 NN denotes http://bccm.belspo.be/index.php
T16962 791-799 NN denotes databank
T16961 783-790 NN denotes plasmid
T16960 773-782 NNP denotes BCCM-LMBP
T16959 769-772 DT denotes the
T16958 766-768 IN denotes at
T16957 761-765 NNS denotes maps
T16956 752-760 NN denotes sequence
T16955 743-751 JJ denotes detailed
T16954 738-742 IN denotes with
T16953 732-737 RP denotes along
T16952 722-731 VBN denotes presented
T16951 718-721 VBP denotes are
T16950 709-717 NNS denotes plasmids
T16949 706-708 IN denotes of
T16948 698-705 NNS denotes Details
T16947 696-697 . denotes .
T16946 683-696 NN denotes normalization
T16945 672-682 NN denotes efficiency
T16944 659-671 NN denotes transfection
T16943 655-658 IN denotes for
T16942 653-654 -RRB- denotes )
T16941 645-653 NNP denotes LMBP4341
T16940 644-645 -LRB- denotes (
T16939 632-643 NNP denotes pACTbetagal
T16938 628-631 CC denotes and
T16937 626-627 , denotes ,
T16936 625-626 -RRB- denotes )
T16935 619-625 NNP denotes Canada
T16934 617-618 , denotes ,
T16933 611-617 NNP denotes Quebec
T16932 609-610 , denotes ,
T16931 601-609 NNP denotes Montreal
T16930 599-600 , denotes ,
T16929 589-599 NNP denotes University
T16928 582-588 NNP denotes McGill
T16927 580-581 , denotes ,
T16926 573-580 NNP denotes Hiscott
T16827 28-33 VBN denotes grown
T16826 23-27 VBD denotes were
T16825 17-22 NNS denotes cells
T16824 12-16 NNP denotes MDCK
T16823 8-11 CC denotes and
T16822 0-7 CD denotes HEK293T
T16925 570-572 NNP denotes J.
T16924 567-569 IN denotes by
T16923 558-566 VBN denotes provided
T16922 551-557 RB denotes kindly
T16921 550-551 -LRB- denotes (
T16920 535-549 JJ denotes pGL3-IFNα4-luc
T16919 533-534 , denotes ,
T16918 532-533 -RRB- denotes )
T16917 524-532 NNP denotes LMBP4011
T16916 523-524 -LRB- denotes (
T16915 513-522 NNP denotes pISRE-luc
T16914 511-512 , denotes ,
T16913 510-511 -RRB- denotes )
T16912 502-510 NNP denotes LMBP3248
T16911 501-502 -LRB- denotes (
T16910 493-500 NNP denotes pConLuc
T16909 480-492 RB denotes respectively
T16908 479-480 -LRB- denotes (
T16907 470-478 NNS denotes plasmids
T16906 461-469 NN denotes reporter
T16905 456-460 NNP denotes IRF7
T16904 454-455 , denotes ,
T16903 450-454 NNP denotes IRF3
T16902 448-449 , denotes ,
T16901 443-448 NNP denotes NF-κB
T16900 441-442 , denotes ,
T16899 440-441 -RRB- denotes )
T16898 439-440 -RRB- denotes )
T16897 434-439 NNP denotes Tokyo
T16896 431-433 IN denotes of
T16895 420-430 NNP denotes University
T16894 418-419 , denotes ,
T16893 410-418 NNP denotes Medicine
T16892 407-409 IN denotes of
T16891 399-406 NNP denotes Faculty
T16890 395-398 CC denotes and
T16889 386-394 NNP denotes Medicine
T16888 383-385 IN denotes of
T16887 376-382 NNP denotes School
T16886 367-375 NNP denotes Graduate
T16885 365-366 , denotes ,
T16884 356-365 NNP denotes Taniguchi
T16883 353-355 NNP denotes T.
T16882 350-352 IN denotes by
T16881 341-349 VBN denotes provided
T16880 334-340 RB denotes kindly
T16879 333-334 -LRB- denotes (
T16878 320-332 NNP denotes pEF-HA-IRF-7
T16877 318-319 , denotes ,
T16876 317-318 -RRB- denotes )
T16875 313-317 CD denotes 6517
T16874 308-312 NNP denotes LMBP
T16873 307-308 -LRB- denotes (
T16872 287-306 NNP denotes pCAGGS-E-RIG-I-CARD
T16871 285-286 , denotes ,
T16870 284-285 -RRB- denotes )
T16869 280-284 CD denotes 3778
T16868 275-279 NNP denotes LMBP
T16867 274-275 -LRB- denotes (
T16866 260-273 NN denotes pCAGGS-E-hA20
T16865 259-260 -LRB- denotes (
T16864 251-258 NNS denotes vectors
T16863 240-250 NN denotes expression
T16862 231-239 JJ denotes specific
T16861 226-230 IN denotes with
T16860 219-225 NN denotes method
T16859 206-218 NN denotes transfection
T16858 194-205 NN denotes precipitate
T16857 184-193 NN denotes phosphate
T16856 176-183 NN denotes calcium
T16855 172-175 DT denotes the
T16854 166-171 VBG denotes using
T16853 154-165 VBN denotes transfected
T16852 149-153 VBD denotes were
T16851 143-148 NNS denotes cells
T16850 135-142 CD denotes HEK293T
T16849 133-134 . denotes .
T16848 122-133 NNS denotes antibiotics
T16847 118-121 CC denotes and
T16846 109-117 NN denotes pyruvate
T16845 102-108 NN denotes sodium
T16844 99-101 NNP denotes mM
T16843 95-98 CD denotes 0.4
T16842 93-94 , denotes ,
T16841 82-93 NNP denotes L-glutamine
T16840 79-81 NNP denotes mM
T16839 77-78 CD denotes 2
T16838 75-76 , denotes ,
T16837 72-75 NNP denotes FCS
T16836 70-71 NN denotes %
T16835 68-70 CD denotes 10
T16834 63-67 IN denotes with
T16833 50-62 VBN denotes supplemented
T16832 48-49 -RRB- denotes )
T16831 43-48 NNP denotes Gibco
T16830 42-43 -LRB- denotes (
T16829 37-41 NNP denotes DMEM
T16828 34-36 IN denotes in
R12674 T16826 T16827 auxpass were,grown
R12675 T16827 T16827 ROOT grown,grown
R12676 T16828 T16827 prep in,grown
R12677 T16829 T16828 pobj DMEM,in
R12678 T16830 T16829 punct (,DMEM
R12679 T16831 T16829 appos Gibco,DMEM
R12680 T16832 T16829 punct ),DMEM
R12681 T16833 T16827 conj supplemented,grown
R12682 T16834 T16833 prep with,supplemented
R12683 T16835 T16836 nummod 10,%
R12684 T16836 T16837 compound %,FCS
R12685 T16837 T16834 pobj FCS,with
R12686 T16838 T16837 punct ",",FCS
R12687 T16839 T16841 nummod 2,L-glutamine
R12688 T16840 T16841 compound mM,L-glutamine
R12689 T16841 T16837 conj L-glutamine,FCS
R12690 T16842 T16841 punct ",",L-glutamine
R12691 T16843 T16846 nummod 0.4,pyruvate
R12692 T16844 T16846 compound mM,pyruvate
R12693 T16845 T16846 compound sodium,pyruvate
R12694 T16846 T16841 appos pyruvate,L-glutamine
R12695 T16847 T16846 cc and,pyruvate
R12696 T16848 T16846 conj antibiotics,pyruvate
R12697 T16849 T16827 punct .,grown
R12698 T16850 T16851 nummod HEK293T,cells
R12699 T16851 T16853 nsubjpass cells,transfected
R12700 T16852 T16853 auxpass were,transfected
R12701 T16853 T16853 ROOT transfected,transfected
R12702 T16854 T16853 advcl using,transfected
R12703 T16855 T16860 det the,method
R12704 T16856 T16858 nsubj calcium,precipitate
R12705 T16857 T16858 compound phosphate,precipitate
R12706 T16858 T16860 compound precipitate,method
R12707 T16859 T16860 compound transfection,method
R12708 T16860 T16854 dobj method,using
R12709 T16861 T16854 prep with,using
R12710 T16862 T16864 amod specific,vectors
R12711 T16863 T16864 compound expression,vectors
R12712 T16864 T16861 pobj vectors,with
R12713 T16865 T16866 punct (,pCAGGS-E-hA20
R12714 T16866 T16864 appos pCAGGS-E-hA20,vectors
R12715 T16867 T16868 punct (,LMBP
R12716 T16868 T16866 dep LMBP,pCAGGS-E-hA20
R12717 T16869 T16868 nummod 3778,LMBP
R12718 T16870 T16868 punct ),LMBP
R12719 T16871 T16868 punct ",",LMBP
R12720 T16872 T16868 conj pCAGGS-E-RIG-I-CARD,LMBP
R12721 T16873 T16872 punct (,pCAGGS-E-RIG-I-CARD
R12722 T16874 T16872 appos LMBP,pCAGGS-E-RIG-I-CARD
R12723 T16875 T16874 nummod 6517,LMBP
R12724 T16876 T16872 punct ),pCAGGS-E-RIG-I-CARD
R12725 T16877 T16872 punct ",",pCAGGS-E-RIG-I-CARD
R12726 T16878 T16872 conj pEF-HA-IRF-7,pCAGGS-E-RIG-I-CARD
R12727 T16879 T16881 punct (,provided
R12728 T16880 T16881 advmod kindly,provided
R12729 T16881 T16868 parataxis provided,LMBP
R12730 T16882 T16881 agent by,provided
R12731 T16883 T16884 compound T.,Taniguchi
R12732 T16884 T16887 poss Taniguchi,School
R12733 T16885 T16884 punct ",",Taniguchi
R12734 T16886 T16887 compound Graduate,School
R12735 T16887 T16882 pobj School,by
R12736 T16888 T16887 prep of,School
R12737 T16889 T16888 pobj Medicine,of
R12738 T16890 T16889 cc and,Medicine
R12739 T16891 T16889 conj Faculty,Medicine
R12740 T16892 T16891 prep of,Faculty
R12741 T16893 T16892 pobj Medicine,of
R12742 T16894 T16891 punct ",",Faculty
R12743 T16895 T16887 conj University,School
R12744 T16896 T16895 prep of,University
R12745 T16897 T16896 pobj Tokyo,of
R12746 T16898 T16895 punct ),University
R12747 T16899 T16887 punct ),School
R12748 T16900 T16887 punct ",",School
R12749 T16901 T16887 conj NF-κB,School
R12750 T16902 T16901 punct ",",NF-κB
R12751 T16903 T16901 conj IRF3,NF-κB
R12752 T16904 T16903 punct ",",IRF3
R12753 T16905 T16906 compound IRF7,reporter
R12754 T16906 T16907 compound reporter,plasmids
R12755 T16907 T16903 conj plasmids,IRF3
R12756 T16908 T16907 punct (,plasmids
R12757 T16909 T16910 advmod respectively,pConLuc
R12758 T16910 T16907 appos pConLuc,plasmids
R12759 T16911 T16912 punct (,LMBP3248
R12760 T16912 T16910 appos LMBP3248,pConLuc
R12761 T16913 T16910 punct ),pConLuc
R12762 T16914 T16910 punct ",",pConLuc
R12763 T16915 T16910 conj pISRE-luc,pConLuc
R12764 T16916 T16917 punct (,LMBP4011
R12765 T16917 T16915 appos LMBP4011,pISRE-luc
R12766 T16918 T16915 punct ),pISRE-luc
R12767 T16919 T16915 punct ",",pISRE-luc
R12768 T16920 T16915 conj pGL3-IFNα4-luc,pISRE-luc
R12769 T16921 T16923 punct (,provided
R12770 T16922 T16923 advmod kindly,provided
R12771 T16923 T16907 parataxis provided,plasmids
R12772 T16924 T16923 agent by,provided
R12773 T16925 T16926 compound J.,Hiscott
R12774 T16926 T16924 pobj Hiscott,by
R12775 T16927 T16926 punct ",",Hiscott
R12776 T16928 T16929 compound McGill,University
R12777 T16929 T16926 conj University,Hiscott
R12778 T16930 T16929 punct ",",University
R12779 T16931 T16929 conj Montreal,University
R12780 T16932 T16931 punct ",",Montreal
R12781 T16933 T16931 conj Quebec,Montreal
R12782 T16934 T16933 punct ",",Quebec
R12783 T16935 T16933 conj Canada,Quebec
R12784 T16936 T16933 punct ),Quebec
R12785 T16937 T16931 punct ",",Montreal
R12786 T16938 T16931 cc and,Montreal
R12787 T16939 T16931 conj pACTbetagal,Montreal
R12788 T16940 T16941 punct (,LMBP4341
R12789 T16941 T16939 appos LMBP4341,pACTbetagal
R12790 T16942 T16939 punct ),pACTbetagal
R12791 T16943 T16923 prep for,provided
R12792 T16944 T16946 compound transfection,normalization
R12793 T16945 T16946 compound efficiency,normalization
R12794 T16946 T16943 pobj normalization,for
R12795 T16947 T16853 punct .,transfected
R12796 T16948 T16952 nsubjpass Details,presented
R12797 T16949 T16948 prep of,Details
R12798 T16950 T16949 pobj plasmids,of
R12799 T16951 T16952 auxpass are,presented
R12800 T16952 T16952 ROOT presented,presented
R12801 T16953 T16952 prep along,presented
R12802 T16954 T16952 prep with,presented
R12803 T16955 T16957 amod detailed,maps
R12804 T16956 T16957 compound sequence,maps
R12805 T16957 T16954 pobj maps,with
R12806 T16958 T16957 prep at,maps
R12807 T16959 T16963 det the,http://bccm.belspo.be/index.php
R12808 T16960 T16963 compound BCCM-LMBP,http://bccm.belspo.be/index.php
R12809 T16961 T16962 compound plasmid,databank
R12810 T16962 T16963 compound databank,http://bccm.belspo.be/index.php
R12811 T16963 T16958 pobj http://bccm.belspo.be/index.php,at
R12812 T16964 T16952 punct .,presented

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T17110 240-250 Gene_expression denotes expression
T17109 240-250 Gene_expression denotes expression
T17108 240-250 Gene_expression denotes expression
T17107 240-250 Gene_expression denotes expression
T17106 240-250 Gene_expression denotes expression
T17105 240-250 Gene_expression denotes expression
T17104 240-250 Gene_expression denotes expression
T17103 240-250 Gene_expression denotes expression
T17102 240-250 Gene_expression denotes expression
T17101 645-653 Protein denotes LMBP4341
T17100 632-643 Protein denotes pACTbetagal
T17099 535-549 Protein denotes pGL3-IFNα4-luc
T17098 524-532 Protein denotes LMBP4011
T17097 513-522 Protein denotes pISRE-luc
T17096 456-460 Protein denotes IRF7
T17095 450-454 Protein denotes IRF3
T17094 443-448 Protein denotes NF-κB
T17093 320-332 Protein denotes pEF-HA-IRF-7
T17092 12-16 Protein denotes MDCK
R12929 T17093 T17102 themeOf pEF-HA-IRF-7,expression
R12930 T17094 T17103 themeOf NF-κB,expression
R12931 T17095 T17104 themeOf IRF3,expression
R12932 T17096 T17105 themeOf IRF7,expression
R12933 T17097 T17106 themeOf pISRE-luc,expression
R12934 T17098 T17107 themeOf LMBP4011,expression
R12935 T17099 T17108 themeOf pGL3-IFNα4-luc,expression
R12936 T17100 T17109 themeOf pACTbetagal,expression
R12937 T17101 T17110 themeOf LMBP4341,expression

testone

Id Subject Object Predicate Lexical cue
T16535 456-460 Protein denotes IRF7
T16534 450-454 Protein denotes IRF3