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PMC:3291650 / 36073-37501 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T16539 479-483 Protein denotes IRF7
T16538 473-477 Protein denotes IRF3
T16537 479-483 Protein denotes IRF7
T16536 473-477 Protein denotes IRF3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T16818 1416-1427 NN denotes antibiotics
T16817 1412-1415 CC denotes and
T16816 1403-1411 NN denotes pyruvate
T16815 1396-1402 NN denotes sodium
T16814 1393-1395 NN denotes mM
T16813 1389-1392 CD denotes 0.4
T16812 1387-1388 -COMMA- denotes ,
T16811 1376-1387 NN denotes L-glutamine
T16810 1373-1375 NN denotes mM
T16809 1371-1372 CD denotes 2
T16808 1369-1370 -COMMA- denotes ,
T16807 1366-1369 NN denotes FCS
T16806 1364-1365 NN denotes %
T16805 1363-1364 CD denotes 1
T16804 1358-1362 IN denotes with
T16803 1345-1357 VB denotes supplemented
T16802 1343-1344 -RRB- denotes )
T16801 1338-1343 NNP denotes Gibco
T16800 1337-1338 -LRB- denotes (
T16799 1332-1336 CD denotes 1640
T16798 1327-1331 NN denotes RPMI
T16797 1324-1326 IN denotes in
T16796 1315-1323 VB denotes cultured
T16795 1310-1314 VB denotes were
T16794 1298-1309 NN denotes macrophages
T16793 1289-1297 JJ denotes Alveolar
T16792 1283-1287 NN denotes EDTA
T16791 1280-1282 NN denotes mM
T16790 1278-1279 CD denotes 1
T16789 1267-1277 VB denotes containing
T16788 1262-1266 NN denotes HBSS
T16787 1257-1261 IN denotes with
T16786 1251-1256 NN denotes times
T16785 1249-1250 CD denotes 4
T16784 1241-1248 VB denotes flushed
T16783 1237-1240 VB denotes was
T16782 1232-1236 NN denotes lung
T16781 1228-1231 DT denotes the
T16780 1224-1227 CC denotes and
T16779 1214-1223 VB denotes canulated
T16778 1210-1213 VB denotes was
T16777 1202-1209 NN denotes trachea
T16776 1198-1201 DT denotes the
T16775 1196-1197 -COMMA- denotes ,
T16774 1185-1196 NN denotes macrophages
T16773 1176-1184 JJ denotes alveolar
T16772 1173-1175 IN denotes of
T16771 1163-1172 NN denotes isolation
T16770 1159-1162 DT denotes the
T16769 1155-1158 IN denotes For
T16768 1143-1153 NN denotes antibodies
T16767 1134-1142 JJ denotes specific
T16766 1128-1133 NN denotes CD11b
T16765 1124-1127 CC denotes and
T16764 1118-1123 NN denotes F4/80
T16763 1112-1117 VB denotes using
T16762 1102-1111 NN denotes cytometry
T16761 1097-1101 NN denotes flow
T16760 1094-1096 IN denotes by
T16759 1085-1093 VB denotes measured
T16758 1082-1084 IN denotes as
T16757 1075-1081 NN denotes purity
T16756 1073-1074 NN denotes %
T16755 1070-1073 CD denotes ≥95
T16754 1067-1069 IN denotes of
T16753 1062-1066 VB denotes were
T16752 1057-1061 NN denotes BMDM
T16751 1050-1055 NN denotes M-CSF
T16750 1038-1049 JJ denotes recombinant
T16749 1032-1037 NN denotes ng/ml
T16748 1029-1031 CD denotes 40
T16747 1025-1028 CC denotes and
T16746 1013-1024 NN denotes antibiotics
T16745 1011-1012 -COMMA- denotes ,
T16744 1003-1011 NN denotes pyruvate
T16743 996-1002 NN denotes sodium
T16742 993-995 NN denotes mM
T16741 989-992 CD denotes 0.4
T16740 987-988 -COMMA- denotes ,
T16739 976-987 NN denotes L-glutamine
T16738 973-975 NN denotes mM
T16737 971-972 CD denotes 2
T16736 969-970 -COMMA- denotes ,
T16735 966-969 NN denotes FCS
T16734 964-965 NN denotes %
T16733 962-964 CD denotes 10
T16732 957-961 IN denotes with
T16731 944-956 VB denotes supplemented
T16730 942-943 -RRB- denotes )
T16729 937-942 NNP denotes Gibco
T16728 936-937 -LRB- denotes (
T16727 931-935 CD denotes 1640
T16726 926-930 NN denotes RPMI
T16725 923-925 IN denotes in
T16724 918-922 NN denotes days
T16723 916-917 CD denotes 7
T16722 907-915 VB denotes cultured
T16721 902-906 VB denotes were
T16720 896-901 NN denotes cells
T16719 889-895 NN denotes marrow
T16718 884-888 NN denotes bone
T16717 882-883 -COMMA- denotes ,
T16716 878-882 NN denotes BMDM
T16715 875-877 IN denotes of
T16714 864-874 NN denotes generation
T16713 860-863 DT denotes the
T16712 856-859 IN denotes For
T16711 828-854 VB denotes //bccm.belspo.be/index.php
T16710 827-828 -COLON- denotes :
T16709 823-827 NN denotes http
T16708 814-822 NN denotes databank
T16707 806-813 NN denotes plasmid
T16706 796-805 NN denotes BCCM-LMBP
T16705 792-795 DT denotes the
T16704 789-791 IN denotes at
T16703 784-788 NN denotes maps
T16702 775-783 NN denotes sequence
T16701 766-774 JJ denotes detailed
T16700 761-765 IN denotes with
T16699 755-760 IN denotes along
T16698 745-754 VB denotes presented
T16697 741-744 VB denotes are
T16696 732-740 NN denotes plasmids
T16695 729-731 IN denotes of
T16694 721-728 NN denotes Details
T16693 706-719 NN denotes normalization
T16692 695-705 NN denotes efficiency
T16691 682-694 NN denotes transfection
T16690 678-681 IN denotes for
T16689 676-677 -RRB- denotes )
T16688 668-676 NN denotes LMBP4341
T16687 667-668 -LRB- denotes (
T16686 655-666 NN denotes pACTbetagal
T16685 651-654 CC denotes and
T16684 649-650 -COMMA- denotes ,
T16683 648-649 -RRB- denotes )
T16682 642-648 NNP denotes Canada
T16681 640-641 -COMMA- denotes ,
T16680 634-640 NNP denotes Quebec
T16679 632-633 -COMMA- denotes ,
T16678 624-632 NNP denotes Montreal
T16677 622-623 -COMMA- denotes ,
T16676 612-622 NNP denotes University
T16675 605-611 NNP denotes McGill
T16674 603-604 -COMMA- denotes ,
T16673 596-603 NNP denotes Hiscott
T16672 593-595 NNP denotes J.
T16671 590-592 IN denotes by
T16670 581-589 VB denotes provided
T16669 574-580 RB denotes kindly
T16668 573-574 -LRB- denotes (
T16667 558-572 NN denotes pGL3-IFNα4-luc
T16666 556-557 -COMMA- denotes ,
T16665 555-556 -RRB- denotes )
T16664 547-555 NN denotes LMBP4011
T16663 546-547 -LRB- denotes (
T16662 536-545 NN denotes pISRE-luc
T16661 534-535 -COMMA- denotes ,
T16660 533-534 -RRB- denotes )
T16659 525-533 NN denotes LMBP3248
T16658 524-525 -LRB- denotes (
T16657 516-523 NN denotes pConLuc
T16656 503-515 RB denotes respectively
T16655 502-503 -LRB- denotes (
T16654 493-501 NN denotes plasmids
T16653 484-492 NN denotes reporter
T16652 479-483 NN denotes IRF7
T16651 477-478 -COMMA- denotes ,
T16650 473-477 NN denotes IRF3
T16649 471-472 -COMMA- denotes ,
T16648 466-471 NN denotes NF-κB
T16647 464-465 -COMMA- denotes ,
T16646 463-464 -RRB- denotes )
T16645 462-463 -RRB- denotes )
T16644 457-462 NNP denotes Tokyo
T16643 454-456 IN denotes of
T16642 443-453 NNP denotes University
T16641 441-442 -COMMA- denotes ,
T16640 433-441 NNP denotes Medicine
T16639 430-432 IN denotes of
T16638 422-429 NNP denotes Faculty
T16637 418-421 CC denotes and
T16636 409-417 NNP denotes Medicine
T16635 406-408 IN denotes of
T16634 399-405 NNP denotes School
T16633 390-398 NNP denotes Graduate
T16632 388-389 -COMMA- denotes ,
T16631 379-388 NNP denotes Taniguchi
T16630 376-378 NNP denotes T.
T16629 373-375 IN denotes by
T16628 364-372 VB denotes provided
T16627 357-363 RB denotes kindly
T16626 356-357 -LRB- denotes (
T16625 343-355 NN denotes pEF-HA-IRF-7
T16624 341-342 -COMMA- denotes ,
T16623 340-341 -RRB- denotes )
T16622 336-340 CD denotes 6517
T16621 331-335 NN denotes LMBP
T16620 330-331 -LRB- denotes (
T16619 310-329 NN denotes pCAGGS-E-RIG-I-CARD
T16618 308-309 -COMMA- denotes ,
T16617 307-308 -RRB- denotes )
T16616 303-307 CD denotes 3778
T16615 298-302 NN denotes LMBP
T16614 297-298 -LRB- denotes (
T16613 283-296 NN denotes pCAGGS-E-hA20
T16612 282-283 -LRB- denotes (
T16576 57-59 IN denotes in
T16575 51-56 VB denotes grown
T16574 46-50 VB denotes were
T16573 40-45 NN denotes cells
T16572 35-39 NN denotes MDCK
T16571 31-34 CC denotes and
T16570 23-30 NN denotes HEK293T
T16569 10-22 NN denotes transfection
T16568 6-9 CC denotes and
T16567 0-5 NN denotes Cells
T16611 274-281 NN denotes vectors
T16610 263-273 NN denotes expression
T16609 254-262 JJ denotes specific
T16608 249-253 IN denotes with
T16607 242-248 NN denotes method
T16606 229-241 NN denotes transfection
T16605 217-228 VB denotes precipitate
T16604 207-216 NN denotes phosphate
T16603 199-206 NN denotes calcium
T16602 195-198 DT denotes the
T16601 189-194 VB denotes using
T16600 177-188 VB denotes transfected
T16599 172-176 VB denotes were
T16598 166-171 NN denotes cells
T16597 158-165 NN denotes HEK293T
T16596 145-156 NN denotes antibiotics
T16595 141-144 CC denotes and
T16594 132-140 NN denotes pyruvate
T16593 125-131 NN denotes sodium
T16592 122-124 NN denotes mM
T16591 118-121 CD denotes 0.4
T16590 116-117 -COMMA- denotes ,
T16589 105-116 NN denotes L-glutamine
T16588 102-104 NN denotes mM
T16587 100-101 CD denotes 2
T16586 98-99 -COMMA- denotes ,
T16585 95-98 NN denotes FCS
T16584 93-94 NN denotes %
T16583 91-93 CD denotes 10
T16582 86-90 IN denotes with
T16581 73-85 VB denotes supplemented
T16580 71-72 -RRB- denotes )
T16579 66-71 NN denotes Gibco
T16578 65-66 -LRB- denotes (
T16577 60-64 NN denotes DMEM
R12424 T16567 T16568 arg1Of Cells,and
R12425 T16569 T16568 arg2Of transfection,and
R12426 T16570 T16571 arg1Of HEK293T,and
R12427 T16572 T16571 arg2Of MDCK,and
R12428 T16573 T16570 arg1Of cells,HEK293T
R12429 T16573 T16572 arg1Of cells,MDCK
R12430 T16573 T16574 arg1Of cells,were
R12431 T16573 T16575 arg2Of cells,grown
R12432 T16575 T16574 arg2Of grown,were
R12433 T16575 T16576 arg1Of grown,in
R12434 T16577 T16576 arg2Of DMEM,in
R12435 T16577 T16578 arg1Of DMEM,(
R12436 T16577 T16581 arg2Of DMEM,supplemented
R12437 T16579 T16578 arg2Of Gibco,(
R12438 T16580 T16578 arg3Of ),(
R12439 T16581 T16582 arg1Of supplemented,with
R12440 T16583 T16584 arg1Of 10,%
R12441 T16585 T16583 arg1Of FCS,10
R12442 T16585 T16586 arg1Of FCS,","
R12443 T16586 T16590 arg1Of ",",","
R12444 T16587 T16588 arg1Of 2,mM
R12445 T16589 T16586 arg2Of L-glutamine,","
R12446 T16589 T16587 arg1Of L-glutamine,2
R12447 T16590 T16595 arg1Of ",",and
R12448 T16591 T16592 arg1Of 0.4,mM
R12449 T16594 T16590 arg2Of pyruvate,","
R12450 T16594 T16591 arg1Of pyruvate,0.4
R12451 T16594 T16593 arg1Of pyruvate,sodium
R12452 T16595 T16582 arg2Of and,with
R12453 T16596 T16595 arg2Of antibiotics,and
R12454 T16598 T16597 arg1Of cells,HEK293T
R12455 T16598 T16599 arg1Of cells,were
R12456 T16598 T16600 arg2Of cells,transfected
R12457 T16600 T16599 arg2Of transfected,were
R12458 T16600 T16601 modOf transfected,using
R12459 T16604 T16601 arg2Of phosphate,using
R12460 T16604 T16602 arg1Of phosphate,the
R12461 T16604 T16603 arg1Of phosphate,calcium
R12462 T16607 T16605 arg2Of method,precipitate
R12463 T16607 T16606 arg1Of method,transfection
R12464 T16607 T16608 arg1Of method,with
R12465 T16611 T16608 arg2Of vectors,with
R12466 T16611 T16609 arg1Of vectors,specific
R12467 T16611 T16610 arg1Of vectors,expression
R12468 T16613 T16614 arg1Of pCAGGS-E-hA20,(
R12469 T16613 T16618 arg1Of pCAGGS-E-hA20,","
R12470 T16615 T16614 arg2Of LMBP,(
R12471 T16615 T16616 arg1Of LMBP,3778
R12472 T16617 T16614 arg3Of ),(
R12473 T16618 T16624 arg1Of ",",","
R12474 T16619 T16618 arg2Of pCAGGS-E-RIG-I-CARD,","
R12475 T16619 T16620 arg1Of pCAGGS-E-RIG-I-CARD,(
R12476 T16621 T16620 arg2Of LMBP,(
R12477 T16621 T16622 arg1Of LMBP,6517
R12478 T16623 T16620 arg3Of ),(
R12479 T16624 T16612 arg2Of ",",(
R12480 T16625 T16624 arg2Of pEF-HA-IRF-7,","
R12481 T16628 T16627 arg1Of provided,kindly
R12482 T16631 T16630 arg1Of Taniguchi,T.
R12483 T16631 T16632 arg1Of Taniguchi,","
R12484 T16632 T16637 arg1Of ",",and
R12485 T16634 T16632 arg2Of School,","
R12486 T16634 T16633 arg1Of School,Graduate
R12487 T16634 T16635 arg1Of School,of
R12488 T16636 T16635 arg2Of Medicine,of
R12489 T16637 T16628 arg1Of and,provided
R12490 T16637 T16629 arg2Of and,by
R12491 T16638 T16637 arg2Of Faculty,and
R12492 T16638 T16639 arg1Of Faculty,of
R12493 T16640 T16639 arg2Of Medicine,of
R12494 T16642 T16641 arg2Of University,","
R12495 T16642 T16643 arg1Of University,of
R12496 T16644 T16643 arg2Of Tokyo,of
R12497 T16648 T16649 arg1Of NF-κB,","
R12498 T16649 T16651 arg1Of ",",","
R12499 T16650 T16649 arg2Of IRF3,","
R12500 T16654 T16651 arg2Of plasmids,","
R12501 T16654 T16652 arg1Of plasmids,IRF7
R12502 T16654 T16653 arg1Of plasmids,reporter
R12503 T16657 T16658 arg1Of pConLuc,(
R12504 T16657 T16661 arg1Of pConLuc,","
R12505 T16659 T16658 arg2Of LMBP3248,(
R12506 T16660 T16658 arg3Of ),(
R12507 T16661 T16655 arg2Of ",",(
R12508 T16661 T16656 arg1Of ",",respectively
R12509 T16661 T16666 arg1Of ",",","
R12510 T16662 T16661 arg2Of pISRE-luc,","
R12511 T16662 T16663 arg1Of pISRE-luc,(
R12512 T16664 T16663 arg2Of LMBP4011,(
R12513 T16665 T16663 arg3Of ),(
R12514 T16667 T16668 arg1Of pGL3-IFNα4-luc,(
R12515 T16667 T16685 arg1Of pGL3-IFNα4-luc,and
R12516 T16670 T16668 arg2Of provided,(
R12517 T16670 T16669 arg1Of provided,kindly
R12518 T16673 T16672 arg1Of Hiscott,J.
R12519 T16673 T16674 arg1Of Hiscott,","
R12520 T16674 T16677 arg1Of ",",","
R12521 T16676 T16674 arg2Of University,","
R12522 T16676 T16675 arg1Of University,McGill
R12523 T16677 T16679 arg1Of ",",","
R12524 T16678 T16677 arg2Of Montreal,","
R12525 T16679 T16670 arg1Of ",",provided
R12526 T16679 T16671 arg2Of ",",by
R12527 T16679 T16681 arg1Of ",",","
R12528 T16680 T16679 arg2Of Quebec,","
R12529 T16682 T16681 arg2Of Canada,","
R12530 T16683 T16668 arg3Of ),(
R12531 T16685 T16666 arg2Of and,","
R12532 T16685 T16684 arg1Of and,","
R12533 T16686 T16685 arg2Of pACTbetagal,and
R12534 T16686 T16687 arg1Of pACTbetagal,(
R12535 T16688 T16687 arg2Of LMBP4341,(
R12536 T16689 T16687 arg3Of ),(
R12537 T16693 T16690 arg2Of normalization,for
R12538 T16693 T16691 arg1Of normalization,transfection
R12539 T16693 T16692 arg1Of normalization,efficiency
R12540 T16694 T16695 arg1Of Details,of
R12541 T16694 T16697 arg1Of Details,are
R12542 T16694 T16698 arg2Of Details,presented
R12543 T16696 T16695 arg2Of plasmids,of
R12544 T16698 T16697 arg2Of presented,are
R12545 T16698 T16699 arg1Of presented,along
R12546 T16698 T16704 arg1Of presented,at
R12547 T16698 T16710 arg1Of presented,:
R12548 T16698 T16711 arg1Of presented,//bccm.belspo.be/index.php
R12549 T16699 T16700 arg1Of along,with
R12550 T16703 T16700 arg2Of maps,with
R12551 T16703 T16701 arg1Of maps,detailed
R12552 T16703 T16702 arg1Of maps,sequence
R12553 T16709 T16704 arg2Of http,at
R12554 T16709 T16705 arg1Of http,the
R12555 T16709 T16706 arg1Of http,BCCM-LMBP
R12556 T16709 T16707 arg1Of http,plasmid
R12557 T16709 T16708 arg1Of http,databank
R12558 T16714 T16712 arg2Of generation,For
R12559 T16714 T16713 arg1Of generation,the
R12560 T16714 T16715 arg1Of generation,of
R12561 T16716 T16715 arg2Of BMDM,of
R12562 T16720 T16718 arg1Of cells,bone
R12563 T16720 T16719 arg1Of cells,marrow
R12564 T16720 T16721 arg1Of cells,were
R12565 T16720 T16722 arg2Of cells,cultured
R12566 T16722 T16712 arg1Of cultured,For
R12567 T16722 T16717 arg1Of cultured,","
R12568 T16722 T16721 arg2Of cultured,were
R12569 T16722 T16724 arg1Of cultured,days
R12570 T16724 T16723 arg1Of days,7
R12571 T16724 T16725 arg1Of days,in
R12572 T16724 T16731 arg2Of days,supplemented
R12573 T16726 T16725 arg2Of RPMI,in
R12574 T16726 T16727 arg1Of RPMI,1640
R12575 T16726 T16728 arg1Of RPMI,(
R12576 T16729 T16728 arg2Of Gibco,(
R12577 T16730 T16728 arg3Of ),(
R12578 T16731 T16732 arg1Of supplemented,with
R12579 T16733 T16734 arg1Of 10,%
R12580 T16735 T16733 arg1Of FCS,10
R12581 T16735 T16736 arg1Of FCS,","
R12582 T16736 T16740 arg1Of ",",","
R12583 T16737 T16738 arg1Of 2,mM
R12584 T16739 T16736 arg2Of L-glutamine,","
R12585 T16739 T16737 arg1Of L-glutamine,2
R12586 T16740 T16745 arg1Of ",",","
R12587 T16741 T16742 arg1Of 0.4,mM
R12588 T16744 T16740 arg2Of pyruvate,","
R12589 T16744 T16741 arg1Of pyruvate,0.4
R12590 T16744 T16743 arg1Of pyruvate,sodium
R12591 T16745 T16747 arg1Of ",",and
R12592 T16746 T16745 arg2Of antibiotics,","
R12593 T16747 T16732 arg2Of and,with
R12594 T16751 T16747 arg2Of M-CSF,and
R12595 T16751 T16748 arg1Of M-CSF,40
R12596 T16751 T16749 arg1Of M-CSF,ng/ml
R12597 T16751 T16750 arg1Of M-CSF,recombinant
R12598 T16752 T16753 arg1Of BMDM,were
R12599 T16752 T16754 arg1Of BMDM,of
R12600 T16753 T16758 arg1Of were,as
R12601 T16754 T16753 arg2Of of,were
R12602 T16755 T16756 arg1Of ≥95,%
R12603 T16757 T16754 arg2Of purity,of
R12604 T16757 T16755 arg1Of purity,≥95
R12605 T16759 T16758 arg2Of measured,as
R12606 T16762 T16759 arg1Of cytometry,measured
R12607 T16762 T16760 arg2Of cytometry,by
R12608 T16762 T16761 arg1Of cytometry,flow
R12609 T16762 T16763 arg1Of cytometry,using
R12610 T16764 T16765 arg1Of F4/80,and
R12611 T16766 T16765 arg2Of CD11b,and
R12612 T16768 T16763 arg2Of antibodies,using
R12613 T16768 T16764 arg1Of antibodies,F4/80
R12614 T16768 T16766 arg1Of antibodies,CD11b
R12615 T16768 T16767 arg1Of antibodies,specific
R12616 T16771 T16769 arg2Of isolation,For
R12617 T16771 T16770 arg1Of isolation,the
R12618 T16771 T16772 arg1Of isolation,of
R12619 T16774 T16772 arg2Of macrophages,of
R12620 T16774 T16773 arg1Of macrophages,alveolar
R12621 T16777 T16776 arg1Of trachea,the
R12622 T16777 T16778 arg1Of trachea,was
R12623 T16777 T16779 arg2Of trachea,canulated
R12624 T16779 T16778 arg2Of canulated,was
R12625 T16779 T16780 arg1Of canulated,and
R12626 T16780 T16769 arg1Of and,For
R12627 T16780 T16775 arg1Of and,","
R12628 T16782 T16781 arg1Of lung,the
R12629 T16782 T16783 arg1Of lung,was
R12630 T16782 T16784 arg2Of lung,flushed
R12631 T16784 T16780 arg2Of flushed,and
R12632 T16784 T16783 arg2Of flushed,was
R12633 T16784 T16786 arg1Of flushed,times
R12634 T16786 T16785 arg1Of times,4
R12635 T16786 T16787 arg1Of times,with
R12636 T16786 T16789 arg1Of times,containing
R12637 T16788 T16787 arg2Of HBSS,with
R12638 T16790 T16791 arg1Of 1,mM
R12639 T16792 T16789 arg2Of EDTA,containing
R12640 T16792 T16790 arg1Of EDTA,1
R12641 T16794 T16793 arg1Of macrophages,Alveolar
R12642 T16794 T16795 arg1Of macrophages,were
R12643 T16794 T16796 arg2Of macrophages,cultured
R12644 T16796 T16795 arg2Of cultured,were
R12645 T16796 T16797 arg1Of cultured,in
R12646 T16798 T16797 arg2Of RPMI,in
R12647 T16798 T16799 arg1Of RPMI,1640
R12648 T16798 T16800 arg1Of RPMI,(
R12649 T16798 T16803 arg2Of RPMI,supplemented
R12650 T16801 T16800 arg2Of Gibco,(
R12651 T16802 T16800 arg3Of ),(
R12652 T16803 T16804 arg1Of supplemented,with
R12653 T16805 T16806 arg1Of 1,%
R12654 T16807 T16805 arg1Of FCS,1
R12655 T16807 T16808 arg1Of FCS,","
R12656 T16808 T16812 arg1Of ",",","
R12657 T16809 T16810 arg1Of 2,mM
R12658 T16811 T16808 arg2Of L-glutamine,","
R12659 T16811 T16809 arg1Of L-glutamine,2
R12660 T16812 T16817 arg1Of ",",and
R12661 T16813 T16814 arg1Of 0.4,mM
R12662 T16816 T16812 arg2Of pyruvate,","
R12663 T16816 T16813 arg1Of pyruvate,0.4
R12664 T16816 T16815 arg1Of pyruvate,sodium
R12665 T16817 T16804 arg2Of and,with
R12666 T16818 T16817 arg2Of antibiotics,and

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T16554 479-483 Protein denotes IRF7
T16553 473-477 Protein denotes IRF3

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T17081 1052-1055 http://www.uniprot.org/uniprot/P04141 denotes CSF
T17080 1050-1055 http://www.uniprot.org/uniprot/P09603 denotes M-CSF
T17079 473-477 http://www.uniprot.org/uniprot/Q14653 denotes IRF3
T17078 479-483 http://www.uniprot.org/uniprot/Q92985 denotes IRF7
T17077 350-355 http://www.uniprot.org/uniprot/Q92985 denotes IRF-7

UBERON-AE

Id Subject Object Predicate Lexical cue
T16542 1232-1236 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T16541 1202-1209 http://purl.obolibrary.org/obo/UBERON_0003126 denotes trachea
T16540 884-895 http://purl.obolibrary.org/obo/UBERON_0002371 denotes bone marrow

GO-BP

Id Subject Object Predicate Lexical cue
T16558 1289-1297 http://purl.obolibrary.org/obo/GO_0048286 denotes Alveolar
T16557 1176-1184 http://purl.obolibrary.org/obo/GO_0048286 denotes alveolar
T16556 884-901 http://purl.obolibrary.org/obo/GO_0071838 denotes bone marrow cells
T16555 884-901 http://purl.obolibrary.org/obo/GO_0071839 denotes bone marrow cells

GO-MF

Id Subject Object Predicate Lexical cue
T16559 1143-1153 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies

GO-CC

Id Subject Object Predicate Lexical cue
T16564 1143-1153 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T16563 1143-1153 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T16562 896-901 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T16561 166-171 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T16560 40-45 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T16550 1289-1428 Sentence denotes Alveolar macrophages were cultured in RPMI 1640 (Gibco) supplemented with 1% FCS, 2 mM L-glutamine, 0.4 mM sodium pyruvate and antibiotics.
T16549 1155-1288 Sentence denotes For the isolation of alveolar macrophages, the trachea was canulated and the lung was flushed 4 times with HBSS containing 1 mM EDTA.
T16548 1057-1154 Sentence denotes BMDM were of ≥95% purity as measured by flow cytometry using F4/80 and CD11b specific antibodies.
T16547 856-1056 Sentence denotes For the generation of BMDM, bone marrow cells were cultured 7 days in RPMI 1640 (Gibco) supplemented with 10% FCS, 2 mM L-glutamine, 0.4 mM sodium pyruvate, antibiotics and 40 ng/ml recombinant M-CSF.
T16546 721-855 Sentence denotes Details of plasmids are presented along with detailed sequence maps at the BCCM-LMBP plasmid databank http://bccm.belspo.be/index.php.
T16545 158-720 Sentence denotes HEK293T cells were transfected using the calcium phosphate precipitate transfection method with specific expression vectors (pCAGGS-E-hA20 (LMBP 3778), pCAGGS-E-RIG-I-CARD (LMBP 6517), pEF-HA-IRF-7 (kindly provided by T. Taniguchi, Graduate School of Medicine and Faculty of Medicine, University of Tokyo)), NF-κB, IRF3, IRF7 reporter plasmids (respectively pConLuc (LMBP3248), pISRE-luc (LMBP4011), pGL3-IFNα4-luc (kindly provided by J. Hiscott, McGill University, Montreal, Quebec, Canada), and pACTbetagal (LMBP4341) for transfection efficiency normalization.
T16544 23-157 Sentence denotes HEK293T and MDCK cells were grown in DMEM (Gibco) supplemented with 10% FCS, 2 mM L-glutamine, 0.4 mM sodium pyruvate and antibiotics.
T16543 0-22 Sentence denotes Cells and transfection
T230 0-22 Sentence denotes Cells and transfection
T231 23-157 Sentence denotes HEK293T and MDCK cells were grown in DMEM (Gibco) supplemented with 10% FCS, 2 mM L-glutamine, 0.4 mM sodium pyruvate and antibiotics.
T232 158-378 Sentence denotes HEK293T cells were transfected using the calcium phosphate precipitate transfection method with specific expression vectors (pCAGGS-E-hA20 (LMBP 3778), pCAGGS-E-RIG-I-CARD (LMBP 6517), pEF-HA-IRF-7 (kindly provided by T.
T233 379-595 Sentence denotes Taniguchi, Graduate School of Medicine and Faculty of Medicine, University of Tokyo)), NF-κB, IRF3, IRF7 reporter plasmids (respectively pConLuc (LMBP3248), pISRE-luc (LMBP4011), pGL3-IFNα4-luc (kindly provided by J.
T234 596-720 Sentence denotes Hiscott, McGill University, Montreal, Quebec, Canada), and pACTbetagal (LMBP4341) for transfection efficiency normalization.
T235 721-855 Sentence denotes Details of plasmids are presented along with detailed sequence maps at the BCCM-LMBP plasmid databank http://bccm.belspo.be/index.php.
T236 856-1056 Sentence denotes For the generation of BMDM, bone marrow cells were cultured 7 days in RPMI 1640 (Gibco) supplemented with 10% FCS, 2 mM L-glutamine, 0.4 mM sodium pyruvate, antibiotics and 40 ng/ml recombinant M-CSF.
T237 1057-1154 Sentence denotes BMDM were of ≥95% purity as measured by flow cytometry using F4/80 and CD11b specific antibodies.
T238 1155-1288 Sentence denotes For the isolation of alveolar macrophages, the trachea was canulated and the lung was flushed 4 times with HBSS containing 1 mM EDTA.
T239 1289-1428 Sentence denotes Alveolar macrophages were cultured in RPMI 1640 (Gibco) supplemented with 1% FCS, 2 mM L-glutamine, 0.4 mM sodium pyruvate and antibiotics.

simple1

Id Subject Object Predicate Lexical cue
T16566 479-483 Protein denotes IRF7
T16565 473-477 Protein denotes IRF3

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T17134 263-273 Gene_expression denotes expression
T17133 479-483 Protein denotes IRF7
T17132 473-477 Protein denotes IRF3
R12947 T17132 T17134 themeOf IRF3,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T17083 479-483 Protein denotes IRF7
T17082 473-477 Protein denotes IRF3

DLUT931

Id Subject Object Predicate Lexical cue
T17088 263-273 Gene_expression denotes expression
T17087 479-483 Protein denotes IRF7
T17086 473-477 Protein denotes IRF3
R12925 T17086 T17088 themeOf IRF3,expression
R12926 T17087 T17088 themeOf IRF7,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T17141 0-5 Entity denotes Cells
T17140 409-417 Entity denotes Medicine
T17139 1128-1153 Entity denotes CD11b specific antibodies
T17138 100-116 Entity denotes 2 mM L-glutamine
T17137 962-1011 Entity denotes 10% FCS, 2 mM L-glutamine, 0.4 mM sodium pyruvate
T17136 479-483 Protein denotes IRF7
T17135 1173-1196 Entity denotes of alveolar macrophages
T17157 1198-1223 Binding denotes the trachea was canulated
T17156 1032-1055 Protein denotes ng/ml recombinant M-CSF
T17155 971-987 Entity denotes 2 mM L-glutamine
T17154 1371-1387 Entity denotes 2 mM L-glutamine
T17153 655-677 Protein denotes pACTbetagal (LMBP4341)
T17152 1278-1287 Entity denotes 1 mM EDTA
T17151 466-478 Protein denotes NF-κB, IRF3,
T17150 1289-1309 Entity denotes Alveolar macrophages
T17149 656-659 Protein denotes ACT
T17148 195-216 Entity denotes the calcium phosphate
T17147 91-140 Entity denotes 10% FCS, 2 mM L-glutamine, 0.4 mM sodium pyruvate
T17146 433-441 Entity denotes Medicine
T17145 1389-1411 Entity denotes 0.4 mM sodium pyruvate
T17144 473-477 Protein denotes IRF3
T17143 884-901 Entity denotes bone marrow cells
T17142 1416-1427 Entity denotes antibiotics

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T17076 1427-1428 . denotes .
T17075 1416-1427 NNS denotes antibiotics
T17074 1412-1415 CC denotes and
T17073 1403-1411 NN denotes pyruvate
T17072 1396-1402 NN denotes sodium
T17071 1393-1395 NNP denotes mM
T17070 1389-1392 CD denotes 0.4
T17069 1387-1388 , denotes ,
T17068 1376-1387 NNP denotes L-glutamine
T17067 1373-1375 NNP denotes mM
T17066 1371-1372 CD denotes 2
T17065 1369-1370 , denotes ,
T17064 1366-1369 NNP denotes FCS
T17063 1364-1365 NN denotes %
T17062 1363-1364 CD denotes 1
T17061 1358-1362 IN denotes with
T17060 1345-1357 VBN denotes supplemented
T17059 1343-1344 -RRB- denotes )
T17058 1338-1343 NNP denotes Gibco
T17057 1337-1338 -LRB- denotes (
T17056 1332-1336 CD denotes 1640
T17055 1327-1331 NNP denotes RPMI
T17054 1324-1326 IN denotes in
T17053 1315-1323 VBN denotes cultured
T17052 1310-1314 VBD denotes were
T17051 1298-1309 NNS denotes macrophages
T17050 1289-1297 NNP denotes Alveolar
T17049 1287-1288 . denotes .
T17048 1283-1287 NNP denotes EDTA
T17047 1280-1282 NNP denotes mM
T17046 1278-1279 CD denotes 1
T17045 1267-1277 VBG denotes containing
T17044 1262-1266 NNP denotes HBSS
T17043 1257-1261 IN denotes with
T17042 1251-1256 NNS denotes times
T17041 1249-1250 CD denotes 4
T17040 1241-1248 VBN denotes flushed
T17039 1237-1240 VBD denotes was
T17038 1232-1236 NN denotes lung
T17037 1228-1231 DT denotes the
T17036 1224-1227 CC denotes and
T17035 1214-1223 VBN denotes canulated
T17034 1210-1213 VBD denotes was
T17033 1202-1209 NN denotes trachea
T17032 1198-1201 DT denotes the
T17031 1196-1197 , denotes ,
T17030 1185-1196 NNS denotes macrophages
T17029 1176-1184 JJ denotes alveolar
T17028 1173-1175 IN denotes of
T17027 1163-1172 NN denotes isolation
T17026 1159-1162 DT denotes the
T17025 1155-1158 IN denotes For
T17024 1153-1154 . denotes .
T17023 1143-1153 NNS denotes antibodies
T17022 1134-1142 JJ denotes specific
T17021 1128-1133 NNP denotes CD11b
T17020 1124-1127 CC denotes and
T17019 1118-1123 NNP denotes F4/80
T17018 1112-1117 VBG denotes using
T17017 1102-1111 NN denotes cytometry
T17016 1097-1101 NN denotes flow
T17015 1094-1096 IN denotes by
T17014 1085-1093 VBN denotes measured
T17013 1082-1084 IN denotes as
T17012 1075-1081 NN denotes purity
T17011 1073-1074 NN denotes %
T17010 1071-1073 CD denotes 95
T17009 1070-1071 CD denotes ≥
T17008 1067-1069 IN denotes of
T17007 1062-1066 VBD denotes were
T17006 1057-1061 NNP denotes BMDM
T17005 1055-1056 . denotes .
T17004 1050-1055 NNP denotes M-CSF
T17003 1038-1049 JJ denotes recombinant
T17002 1032-1037 JJ denotes ng/ml
T17001 1029-1031 CD denotes 40
T17000 1025-1028 CC denotes and
T16999 1013-1024 NNS denotes antibiotics
T16998 1011-1012 , denotes ,
T16997 1003-1011 NN denotes pyruvate
T16996 996-1002 NN denotes sodium
T16995 993-995 NNP denotes mM
T16994 989-992 CD denotes 0.4
T16993 987-988 , denotes ,
T16992 976-987 NNP denotes L-glutamine
T16991 973-975 NNP denotes mM
T16990 971-972 CD denotes 2
T16989 969-970 , denotes ,
T16988 966-969 NNP denotes FCS
T16987 964-965 NN denotes %
T16986 962-964 CD denotes 10
T16985 957-961 IN denotes with
T16984 944-956 VBN denotes supplemented
T16983 942-943 -RRB- denotes )
T16982 937-942 NNP denotes Gibco
T16981 936-937 -LRB- denotes (
T16980 931-935 CD denotes 1640
T16979 926-930 NNP denotes RPMI
T16978 923-925 IN denotes in
T16977 918-922 NNS denotes days
T16976 916-917 CD denotes 7
T16975 907-915 VBN denotes cultured
T16974 902-906 VBD denotes were
T16973 896-901 NNS denotes cells
T16972 889-895 NN denotes marrow
T16971 884-888 NN denotes bone
T16970 882-883 , denotes ,
T16969 878-882 NNP denotes BMDM
T16968 875-877 IN denotes of
T16967 864-874 NN denotes generation
T16966 860-863 DT denotes the
T16965 856-859 IN denotes For
T16964 854-855 . denotes .
T16963 823-854 NN denotes http://bccm.belspo.be/index.php
T16962 814-822 NN denotes databank
T16961 806-813 NN denotes plasmid
T16960 796-805 NNP denotes BCCM-LMBP
T16959 792-795 DT denotes the
T16958 789-791 IN denotes at
T16957 784-788 NNS denotes maps
T16956 775-783 NN denotes sequence
T16955 766-774 JJ denotes detailed
T16954 761-765 IN denotes with
T16953 755-760 RP denotes along
T16952 745-754 VBN denotes presented
T16951 741-744 VBP denotes are
T16950 732-740 NNS denotes plasmids
T16949 729-731 IN denotes of
T16948 721-728 NNS denotes Details
T16947 719-720 . denotes .
T16946 706-719 NN denotes normalization
T16945 695-705 NN denotes efficiency
T16944 682-694 NN denotes transfection
T16943 678-681 IN denotes for
T16942 676-677 -RRB- denotes )
T16941 668-676 NNP denotes LMBP4341
T16940 667-668 -LRB- denotes (
T16939 655-666 NNP denotes pACTbetagal
T16938 651-654 CC denotes and
T16937 649-650 , denotes ,
T16936 648-649 -RRB- denotes )
T16935 642-648 NNP denotes Canada
T16934 640-641 , denotes ,
T16933 634-640 NNP denotes Quebec
T16932 632-633 , denotes ,
T16931 624-632 NNP denotes Montreal
T16930 622-623 , denotes ,
T16929 612-622 NNP denotes University
T16928 605-611 NNP denotes McGill
T16927 603-604 , denotes ,
T16926 596-603 NNP denotes Hiscott
T16827 51-56 VBN denotes grown
T16826 46-50 VBD denotes were
T16825 40-45 NNS denotes cells
T16824 35-39 NNP denotes MDCK
T16823 31-34 CC denotes and
T16822 23-30 CD denotes HEK293T
T16821 10-22 NN denotes transfection
T16820 6-9 CC denotes and
T16819 0-5 NNS denotes Cells
T16925 593-595 NNP denotes J.
T16924 590-592 IN denotes by
T16923 581-589 VBN denotes provided
T16922 574-580 RB denotes kindly
T16921 573-574 -LRB- denotes (
T16920 558-572 JJ denotes pGL3-IFNα4-luc
T16919 556-557 , denotes ,
T16918 555-556 -RRB- denotes )
T16917 547-555 NNP denotes LMBP4011
T16916 546-547 -LRB- denotes (
T16915 536-545 NNP denotes pISRE-luc
T16914 534-535 , denotes ,
T16913 533-534 -RRB- denotes )
T16912 525-533 NNP denotes LMBP3248
T16911 524-525 -LRB- denotes (
T16910 516-523 NNP denotes pConLuc
T16909 503-515 RB denotes respectively
T16908 502-503 -LRB- denotes (
T16907 493-501 NNS denotes plasmids
T16906 484-492 NN denotes reporter
T16905 479-483 NNP denotes IRF7
T16904 477-478 , denotes ,
T16903 473-477 NNP denotes IRF3
T16902 471-472 , denotes ,
T16901 466-471 NNP denotes NF-κB
T16900 464-465 , denotes ,
T16899 463-464 -RRB- denotes )
T16898 462-463 -RRB- denotes )
T16897 457-462 NNP denotes Tokyo
T16896 454-456 IN denotes of
T16895 443-453 NNP denotes University
T16894 441-442 , denotes ,
T16893 433-441 NNP denotes Medicine
T16892 430-432 IN denotes of
T16891 422-429 NNP denotes Faculty
T16890 418-421 CC denotes and
T16889 409-417 NNP denotes Medicine
T16888 406-408 IN denotes of
T16887 399-405 NNP denotes School
T16886 390-398 NNP denotes Graduate
T16885 388-389 , denotes ,
T16884 379-388 NNP denotes Taniguchi
T16883 376-378 NNP denotes T.
T16882 373-375 IN denotes by
T16881 364-372 VBN denotes provided
T16880 357-363 RB denotes kindly
T16879 356-357 -LRB- denotes (
T16878 343-355 NNP denotes pEF-HA-IRF-7
T16877 341-342 , denotes ,
T16876 340-341 -RRB- denotes )
T16875 336-340 CD denotes 6517
T16874 331-335 NNP denotes LMBP
T16873 330-331 -LRB- denotes (
T16872 310-329 NNP denotes pCAGGS-E-RIG-I-CARD
T16871 308-309 , denotes ,
T16870 307-308 -RRB- denotes )
T16869 303-307 CD denotes 3778
T16868 298-302 NNP denotes LMBP
T16867 297-298 -LRB- denotes (
T16866 283-296 NN denotes pCAGGS-E-hA20
T16865 282-283 -LRB- denotes (
T16864 274-281 NNS denotes vectors
T16863 263-273 NN denotes expression
T16862 254-262 JJ denotes specific
T16861 249-253 IN denotes with
T16860 242-248 NN denotes method
T16859 229-241 NN denotes transfection
T16858 217-228 NN denotes precipitate
T16857 207-216 NN denotes phosphate
T16856 199-206 NN denotes calcium
T16855 195-198 DT denotes the
T16854 189-194 VBG denotes using
T16853 177-188 VBN denotes transfected
T16852 172-176 VBD denotes were
T16851 166-171 NNS denotes cells
T16850 158-165 CD denotes HEK293T
T16849 156-157 . denotes .
T16848 145-156 NNS denotes antibiotics
T16847 141-144 CC denotes and
T16846 132-140 NN denotes pyruvate
T16845 125-131 NN denotes sodium
T16844 122-124 NNP denotes mM
T16843 118-121 CD denotes 0.4
T16842 116-117 , denotes ,
T16841 105-116 NNP denotes L-glutamine
T16840 102-104 NNP denotes mM
T16839 100-101 CD denotes 2
T16838 98-99 , denotes ,
T16837 95-98 NNP denotes FCS
T16836 93-94 NN denotes %
T16835 91-93 CD denotes 10
T16834 86-90 IN denotes with
T16833 73-85 VBN denotes supplemented
T16832 71-72 -RRB- denotes )
T16831 66-71 NNP denotes Gibco
T16830 65-66 -LRB- denotes (
T16829 60-64 NNP denotes DMEM
T16828 57-59 IN denotes in
R12667 T16819 T16827 nsubjpass Cells,grown
R12668 T16820 T16819 cc and,Cells
R12669 T16821 T16819 conj transfection,Cells
R12670 T16822 T16821 dobj HEK293T,transfection
R12671 T16823 T16821 cc and,transfection
R12672 T16824 T16821 conj MDCK,transfection
R12673 T16825 T16819 conj cells,Cells
R12674 T16826 T16827 auxpass were,grown
R12675 T16827 T16827 ROOT grown,grown
R12676 T16828 T16827 prep in,grown
R12677 T16829 T16828 pobj DMEM,in
R12678 T16830 T16829 punct (,DMEM
R12679 T16831 T16829 appos Gibco,DMEM
R12680 T16832 T16829 punct ),DMEM
R12681 T16833 T16827 conj supplemented,grown
R12682 T16834 T16833 prep with,supplemented
R12683 T16835 T16836 nummod 10,%
R12684 T16836 T16837 compound %,FCS
R12685 T16837 T16834 pobj FCS,with
R12686 T16838 T16837 punct ",",FCS
R12687 T16839 T16841 nummod 2,L-glutamine
R12688 T16840 T16841 compound mM,L-glutamine
R12689 T16841 T16837 conj L-glutamine,FCS
R12690 T16842 T16841 punct ",",L-glutamine
R12691 T16843 T16846 nummod 0.4,pyruvate
R12692 T16844 T16846 compound mM,pyruvate
R12693 T16845 T16846 compound sodium,pyruvate
R12694 T16846 T16841 appos pyruvate,L-glutamine
R12695 T16847 T16846 cc and,pyruvate
R12696 T16848 T16846 conj antibiotics,pyruvate
R12697 T16849 T16827 punct .,grown
R12698 T16850 T16851 nummod HEK293T,cells
R12699 T16851 T16853 nsubjpass cells,transfected
R12700 T16852 T16853 auxpass were,transfected
R12701 T16853 T16853 ROOT transfected,transfected
R12702 T16854 T16853 advcl using,transfected
R12703 T16855 T16860 det the,method
R12704 T16856 T16858 nsubj calcium,precipitate
R12705 T16857 T16858 compound phosphate,precipitate
R12706 T16858 T16860 compound precipitate,method
R12707 T16859 T16860 compound transfection,method
R12708 T16860 T16854 dobj method,using
R12709 T16861 T16854 prep with,using
R12710 T16862 T16864 amod specific,vectors
R12711 T16863 T16864 compound expression,vectors
R12712 T16864 T16861 pobj vectors,with
R12713 T16865 T16866 punct (,pCAGGS-E-hA20
R12714 T16866 T16864 appos pCAGGS-E-hA20,vectors
R12715 T16867 T16868 punct (,LMBP
R12716 T16868 T16866 dep LMBP,pCAGGS-E-hA20
R12717 T16869 T16868 nummod 3778,LMBP
R12718 T16870 T16868 punct ),LMBP
R12719 T16871 T16868 punct ",",LMBP
R12720 T16872 T16868 conj pCAGGS-E-RIG-I-CARD,LMBP
R12721 T16873 T16872 punct (,pCAGGS-E-RIG-I-CARD
R12722 T16874 T16872 appos LMBP,pCAGGS-E-RIG-I-CARD
R12723 T16875 T16874 nummod 6517,LMBP
R12724 T16876 T16872 punct ),pCAGGS-E-RIG-I-CARD
R12725 T16877 T16872 punct ",",pCAGGS-E-RIG-I-CARD
R12726 T16878 T16872 conj pEF-HA-IRF-7,pCAGGS-E-RIG-I-CARD
R12727 T16879 T16881 punct (,provided
R12728 T16880 T16881 advmod kindly,provided
R12729 T16881 T16868 parataxis provided,LMBP
R12730 T16882 T16881 agent by,provided
R12731 T16883 T16884 compound T.,Taniguchi
R12732 T16884 T16887 poss Taniguchi,School
R12733 T16885 T16884 punct ",",Taniguchi
R12734 T16886 T16887 compound Graduate,School
R12735 T16887 T16882 pobj School,by
R12736 T16888 T16887 prep of,School
R12737 T16889 T16888 pobj Medicine,of
R12738 T16890 T16889 cc and,Medicine
R12739 T16891 T16889 conj Faculty,Medicine
R12740 T16892 T16891 prep of,Faculty
R12741 T16893 T16892 pobj Medicine,of
R12742 T16894 T16891 punct ",",Faculty
R12743 T16895 T16887 conj University,School
R12744 T16896 T16895 prep of,University
R12745 T16897 T16896 pobj Tokyo,of
R12746 T16898 T16895 punct ),University
R12747 T16899 T16887 punct ),School
R12748 T16900 T16887 punct ",",School
R12749 T16901 T16887 conj NF-κB,School
R12750 T16902 T16901 punct ",",NF-κB
R12751 T16903 T16901 conj IRF3,NF-κB
R12752 T16904 T16903 punct ",",IRF3
R12753 T16905 T16906 compound IRF7,reporter
R12754 T16906 T16907 compound reporter,plasmids
R12755 T16907 T16903 conj plasmids,IRF3
R12756 T16908 T16907 punct (,plasmids
R12757 T16909 T16910 advmod respectively,pConLuc
R12758 T16910 T16907 appos pConLuc,plasmids
R12759 T16911 T16912 punct (,LMBP3248
R12760 T16912 T16910 appos LMBP3248,pConLuc
R12761 T16913 T16910 punct ),pConLuc
R12762 T16914 T16910 punct ",",pConLuc
R12763 T16915 T16910 conj pISRE-luc,pConLuc
R12764 T16916 T16917 punct (,LMBP4011
R12765 T16917 T16915 appos LMBP4011,pISRE-luc
R12766 T16918 T16915 punct ),pISRE-luc
R12767 T16919 T16915 punct ",",pISRE-luc
R12768 T16920 T16915 conj pGL3-IFNα4-luc,pISRE-luc
R12769 T16921 T16923 punct (,provided
R12770 T16922 T16923 advmod kindly,provided
R12771 T16923 T16907 parataxis provided,plasmids
R12772 T16924 T16923 agent by,provided
R12773 T16925 T16926 compound J.,Hiscott
R12774 T16926 T16924 pobj Hiscott,by
R12775 T16927 T16926 punct ",",Hiscott
R12776 T16928 T16929 compound McGill,University
R12777 T16929 T16926 conj University,Hiscott
R12778 T16930 T16929 punct ",",University
R12779 T16931 T16929 conj Montreal,University
R12780 T16932 T16931 punct ",",Montreal
R12781 T16933 T16931 conj Quebec,Montreal
R12782 T16934 T16933 punct ",",Quebec
R12783 T16935 T16933 conj Canada,Quebec
R12784 T16936 T16933 punct ),Quebec
R12785 T16937 T16931 punct ",",Montreal
R12786 T16938 T16931 cc and,Montreal
R12787 T16939 T16931 conj pACTbetagal,Montreal
R12788 T16940 T16941 punct (,LMBP4341
R12789 T16941 T16939 appos LMBP4341,pACTbetagal
R12790 T16942 T16939 punct ),pACTbetagal
R12791 T16943 T16923 prep for,provided
R12792 T16944 T16946 compound transfection,normalization
R12793 T16945 T16946 compound efficiency,normalization
R12794 T16946 T16943 pobj normalization,for
R12795 T16947 T16853 punct .,transfected
R12796 T16948 T16952 nsubjpass Details,presented
R12797 T16949 T16948 prep of,Details
R12798 T16950 T16949 pobj plasmids,of
R12799 T16951 T16952 auxpass are,presented
R12800 T16952 T16952 ROOT presented,presented
R12801 T16953 T16952 prep along,presented
R12802 T16954 T16952 prep with,presented
R12803 T16955 T16957 amod detailed,maps
R12804 T16956 T16957 compound sequence,maps
R12805 T16957 T16954 pobj maps,with
R12806 T16958 T16957 prep at,maps
R12807 T16959 T16963 det the,http://bccm.belspo.be/index.php
R12808 T16960 T16963 compound BCCM-LMBP,http://bccm.belspo.be/index.php
R12809 T16961 T16962 compound plasmid,databank
R12810 T16962 T16963 compound databank,http://bccm.belspo.be/index.php
R12811 T16963 T16958 pobj http://bccm.belspo.be/index.php,at
R12812 T16964 T16952 punct .,presented
R12813 T16965 T16975 prep For,cultured
R12814 T16966 T16967 det the,generation
R12815 T16967 T16965 pobj generation,For
R12816 T16968 T16967 prep of,generation
R12817 T16969 T16968 pobj BMDM,of
R12818 T16970 T16969 punct ",",BMDM
R12819 T16971 T16972 compound bone,marrow
R12820 T16972 T16973 compound marrow,cells
R12821 T16973 T16975 nsubjpass cells,cultured
R12822 T16974 T16975 auxpass were,cultured
R12823 T16975 T16975 ROOT cultured,cultured
R12824 T16976 T16977 nummod 7,days
R12825 T16977 T16975 npadvmod days,cultured
R12826 T16978 T16975 prep in,cultured
R12827 T16979 T16984 nsubj RPMI,supplemented
R12828 T16980 T16979 nummod 1640,RPMI
R12829 T16981 T16982 punct (,Gibco
R12830 T16982 T16979 appos Gibco,RPMI
R12831 T16983 T16979 punct ),RPMI
R12832 T16984 T16975 conj supplemented,cultured
R12833 T16985 T16984 prep with,supplemented
R12834 T16986 T16987 nummod 10,%
R12835 T16987 T16988 compound %,FCS
R12836 T16988 T16985 pobj FCS,with
R12837 T16989 T16988 punct ",",FCS
R12838 T16990 T16992 nummod 2,L-glutamine
R12839 T16991 T16992 compound mM,L-glutamine
R12840 T16992 T16988 conj L-glutamine,FCS
R12841 T16993 T16992 punct ",",L-glutamine
R12842 T16994 T16997 nummod 0.4,pyruvate
R12843 T16995 T16997 compound mM,pyruvate
R12844 T16996 T16997 compound sodium,pyruvate
R12845 T16997 T16992 appos pyruvate,L-glutamine
R12846 T16998 T16997 punct ",",pyruvate
R12847 T16999 T16997 conj antibiotics,pyruvate
R12848 T17000 T16999 cc and,antibiotics
R12849 T17001 T17004 nummod 40,M-CSF
R12850 T17002 T17003 advmod ng/ml,recombinant
R12851 T17003 T17004 amod recombinant,M-CSF
R12852 T17004 T16999 conj M-CSF,antibiotics
R12853 T17005 T16984 punct .,supplemented
R12854 T17006 T17007 nsubj BMDM,were
R12855 T17007 T17007 ROOT were,were
R12856 T17008 T17007 prep of,were
R12857 T17009 T17012 nummod ≥,purity
R12858 T17010 T17011 nummod 95,%
R12859 T17011 T17012 compound %,purity
R12860 T17012 T17008 pobj purity,of
R12861 T17013 T17014 mark as,measured
R12862 T17014 T17007 advcl measured,were
R12863 T17015 T17014 agent by,measured
R12864 T17016 T17017 compound flow,cytometry
R12865 T17017 T17015 pobj cytometry,by
R12866 T17018 T17014 advcl using,measured
R12867 T17019 T17023 nmod F4/80,antibodies
R12868 T17020 T17019 cc and,F4/80
R12869 T17021 T17019 conj CD11b,F4/80
R12870 T17022 T17023 amod specific,antibodies
R12871 T17023 T17018 dobj antibodies,using
R12872 T17024 T17007 punct .,were
R12873 T17025 T17034 prep For,was
R12874 T17026 T17027 det the,isolation
R12875 T17027 T17025 pobj isolation,For
R12876 T17028 T17027 prep of,isolation
R12877 T17029 T17030 amod alveolar,macrophages
R12878 T17030 T17028 pobj macrophages,of
R12879 T17031 T17034 punct ",",was
R12880 T17032 T17033 det the,trachea
R12881 T17033 T17034 nsubj trachea,was
R12882 T17034 T17034 ROOT was,was
R12883 T17035 T17034 attr canulated,was
R12884 T17036 T17035 cc and,canulated
R12885 T17037 T17038 det the,lung
R12886 T17038 T17040 nsubjpass lung,flushed
R12887 T17039 T17040 auxpass was,flushed
R12888 T17040 T17035 conj flushed,canulated
R12889 T17041 T17042 nummod 4,times
R12890 T17042 T17040 npadvmod times,flushed
R12891 T17043 T17040 prep with,flushed
R12892 T17044 T17043 pobj HBSS,with
R12893 T17045 T17040 advcl containing,flushed
R12894 T17046 T17048 nummod 1,EDTA
R12895 T17047 T17048 compound mM,EDTA
R12896 T17048 T17045 dobj EDTA,containing
R12897 T17049 T17034 punct .,was
R12898 T17050 T17051 compound Alveolar,macrophages
R12899 T17051 T17060 nsubjpass macrophages,supplemented
R12900 T17052 T17060 ccomp were,supplemented
R12901 T17053 T17052 acomp cultured,were
R12902 T17054 T17053 prep in,cultured
R12903 T17055 T17060 nsubj RPMI,supplemented
R12904 T17056 T17055 nummod 1640,RPMI
R12905 T17057 T17058 punct (,Gibco
R12906 T17058 T17055 appos Gibco,RPMI
R12907 T17059 T17060 punct ),supplemented
R12908 T17060 T17060 ROOT supplemented,supplemented
R12909 T17061 T17060 prep with,supplemented
R12910 T17062 T17063 nummod 1,%
R12911 T17063 T17064 compound %,FCS
R12914 T17066 T17068 nummod 2,L-glutamine
R12915 T17067 T17068 compound mM,L-glutamine
R12916 T17068 T17064 conj L-glutamine,FCS
R12917 T17069 T17068 punct ",",L-glutamine
R12918 T17070 T17073 nummod 0.4,pyruvate
R12919 T17071 T17073 compound mM,pyruvate
R12920 T17072 T17073 compound sodium,pyruvate
R12921 T17073 T17068 appos pyruvate,L-glutamine
R12922 T17074 T17073 cc and,pyruvate
R12923 T17075 T17073 conj antibiotics,pyruvate
R12924 T17076 T17060 punct .,supplemented
R12912 T17064 T17061 pobj FCS,with
R12913 T17065 T17064 punct ",",FCS

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T17111 1128-1133 Protein denotes CD11b
T17110 263-273 Gene_expression denotes expression
T17109 263-273 Gene_expression denotes expression
T17108 263-273 Gene_expression denotes expression
T17107 263-273 Gene_expression denotes expression
T17106 263-273 Gene_expression denotes expression
T17105 263-273 Gene_expression denotes expression
T17104 263-273 Gene_expression denotes expression
T17103 263-273 Gene_expression denotes expression
T17102 263-273 Gene_expression denotes expression
T17101 668-676 Protein denotes LMBP4341
T17100 655-666 Protein denotes pACTbetagal
T17099 558-572 Protein denotes pGL3-IFNα4-luc
T17098 547-555 Protein denotes LMBP4011
T17097 536-545 Protein denotes pISRE-luc
T17096 479-483 Protein denotes IRF7
T17095 473-477 Protein denotes IRF3
T17094 466-471 Protein denotes NF-κB
T17093 343-355 Protein denotes pEF-HA-IRF-7
T17092 35-39 Protein denotes MDCK
R12929 T17093 T17102 themeOf pEF-HA-IRF-7,expression
R12930 T17094 T17103 themeOf NF-κB,expression
R12931 T17095 T17104 themeOf IRF3,expression
R12932 T17096 T17105 themeOf IRF7,expression
R12933 T17097 T17106 themeOf pISRE-luc,expression
R12934 T17098 T17107 themeOf LMBP4011,expression
R12935 T17099 T17108 themeOf pGL3-IFNα4-luc,expression
R12936 T17100 T17109 themeOf pACTbetagal,expression
R12937 T17101 T17110 themeOf LMBP4341,expression

testone

Id Subject Object Predicate Lexical cue
T16535 479-483 Protein denotes IRF7
T16534 473-477 Protein denotes IRF3