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PMC:3291650 / 3178-3475 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T847 283-287 Protein denotes IRF7
T846 274-278 Protein denotes IRF3
T845 151-156 Protein denotes IFN-β
T844 140-145 Protein denotes IFN-α
T843 126-138 Protein denotes interferon-α
T842 96-100 Protein denotes IL-1
T841 87-91 Protein denotes IL-6
T840 82-85 Protein denotes TNF
T791 283-287 Protein denotes IRF7
T790 274-278 Protein denotes IRF3
T789 151-156 Protein denotes IFN-β
T788 140-145 Protein denotes IFN-α
T787 126-138 Protein denotes interferon-α
T786 96-100 Protein denotes IL-1
T785 87-91 Protein denotes IL-6
T784 82-85 Protein denotes TNF
R531 T844 T843 equivalentTo IFN-α,interferon-α

2_test

Id Subject Object Predicate Lexical cue
22396652-20404851-98461805 289-290 20404851 denotes 1
22396652-20303872-98461806 294-295 20303872 denotes 2

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1442 295-296 -RRB- denotes ]
T1441 294-295 CD denotes 2
T1440 293-294 -LRB- denotes [
T1439 291-292 -COMMA- denotes ,
T1438 290-291 -RRB- denotes ]
T1437 289-290 CD denotes 1
T1436 288-289 -LRB- denotes [
T1435 283-287 NN denotes IRF7
T1434 279-282 CC denotes and
T1433 274-278 NN denotes IRF3
T1432 272-273 -COMMA- denotes ,
T1431 268-272 NN denotes AP-1
T1430 266-267 -COMMA- denotes ,
T1429 261-266 NN denotes NF-κB
T1428 258-260 IN denotes as
T1427 253-257 JJ denotes such
T1426 245-252 NN denotes factors
T1425 231-244 NN denotes transcription
T1424 223-230 JJ denotes various
T1423 215-222 VB denotes control
T1422 210-214 WDT denotes that
T1421 201-209 NN denotes pathways
T1420 191-200 NN denotes signaling
T1419 180-190 JJ denotes downstream
T1418 177-179 IN denotes of
T1417 166-176 NN denotes activation
T1416 158-165 IN denotes through
T1415 156-157 -RRB- denotes )
T1414 151-156 NN denotes IFN-β
T1413 147-150 CC denotes and
T1412 145-146 -RRB- denotes )
T1411 140-145 NN denotes IFN-α
T1410 139-140 -LRB- denotes (
T1409 126-138 NN denotes interferon-α
T1408 125-126 -LRB- denotes (
T1407 113-124 NN denotes interferons
T1406 111-112 CD denotes I
T1405 106-110 NN denotes type
T1404 102-105 CC denotes and
T1403 100-101 -RRB- denotes )
T1402 96-100 NN denotes IL-1
T1401 92-95 CC denotes and
T1400 87-91 NN denotes IL-6
T1399 85-86 -COMMA- denotes ,
T1398 82-85 NN denotes TNF
T1397 77-81 FW denotes e.g.
T1396 76-77 -LRB- denotes (
T1395 66-75 NN denotes cytokines
T1394 50-65 JJ denotes proinflammatory
T1393 45-49 NN denotes host
T1392 42-44 IN denotes of
T1391 31-41 NN denotes production
T1390 27-30 DT denotes the
T1389 19-26 VB denotes induces
T1388 14-18 NN denotes PRRs
T1387 11-13 IN denotes of
T1386 0-10 NN denotes Triggering
R654 T1386 T1387 arg1Of Triggering,of
R655 T1386 T1389 arg1Of Triggering,induces
R656 T1388 T1387 arg2Of PRRs,of
R657 T1389 T1416 arg1Of induces,through
R658 T1391 T1389 arg2Of production,induces
R659 T1391 T1390 arg1Of production,the
R660 T1391 T1392 arg1Of production,of
R661 T1395 T1393 arg1Of cytokines,host
R662 T1395 T1394 arg1Of cytokines,proinflammatory
R663 T1395 T1396 arg1Of cytokines,(
R664 T1395 T1404 arg1Of cytokines,and
R665 T1398 T1399 arg1Of TNF,","
R666 T1399 T1401 arg1Of ",",and
R667 T1400 T1399 arg2Of IL-6,","
R668 T1401 T1396 arg2Of and,(
R669 T1401 T1397 arg1Of and,e.g.
R670 T1402 T1401 arg2Of IL-1,and
R671 T1403 T1396 arg3Of ),(
R672 T1404 T1392 arg2Of and,of
R673 T1407 T1404 arg2Of interferons,and
R674 T1407 T1405 arg1Of interferons,type
R675 T1407 T1406 arg1Of interferons,I
R676 T1407 T1408 arg1Of interferons,(
R677 T1409 T1410 arg1Of interferon-α,(
R678 T1409 T1413 arg1Of interferon-α,and
R679 T1411 T1410 arg2Of IFN-α,(
R680 T1412 T1410 arg3Of ),(
R681 T1413 T1408 arg2Of and,(
R682 T1414 T1413 arg2Of IFN-β,and
R683 T1415 T1408 arg3Of ),(
R684 T1417 T1416 arg2Of activation,through
R685 T1417 T1418 arg1Of activation,of
R686 T1421 T1418 arg2Of pathways,of
R687 T1421 T1419 arg1Of pathways,downstream
R688 T1421 T1420 arg1Of pathways,signaling
R689 T1421 T1422 arg1Of pathways,that
R690 T1421 T1423 arg1Of pathways,control
R691 T1423 T1439 arg1Of control,","
R692 T1423 T1440 arg1Of control,[
R693 T1426 T1423 arg2Of factors,control
R694 T1426 T1424 arg1Of factors,various
R695 T1426 T1425 arg1Of factors,transcription
R696 T1426 T1428 arg1Of factors,as
R697 T1428 T1427 arg1Of as,such
R698 T1429 T1430 arg1Of NF-κB,","
R699 T1430 T1432 arg1Of ",",","
R700 T1431 T1430 arg2Of AP-1,","
R701 T1432 T1434 arg1Of ",",and
R702 T1433 T1432 arg2Of IRF3,","
R703 T1434 T1428 arg2Of and,as
R704 T1435 T1434 arg2Of IRF7,and
R705 T1435 T1436 arg1Of IRF7,[
R706 T1437 T1436 arg2Of 1,[
R707 T1438 T1436 arg3Of ],[
R708 T1441 T1440 arg2Of 2,[
R709 T1442 T1440 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1033 126-138 Protein denotes interferon-α
T1032 96-100 Protein denotes IL-1
T1031 87-91 Protein denotes IL-6
T1030 82-85 Protein denotes TNF
T1037 283-287 Protein denotes IRF7
T1036 274-278 Protein denotes IRF3
T1035 151-156 Protein denotes IFN-β
T1034 140-145 Protein denotes IFN-α

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3658 283-287 http://www.uniprot.org/uniprot/Q92985 denotes IRF7
T3654 274-278 http://www.uniprot.org/uniprot/Q14653 denotes IRF3
T3653 268-272 http://www.uniprot.org/uniprot/P05412 denotes AP-1
T3652 144-154 http://www.uniprot.org/uniprot/P01562 denotes α) and IFN
T3651 137-143 http://www.uniprot.org/uniprot/P01562 denotes α (IFN
T3650 87-91 http://www.uniprot.org/uniprot/P05231 denotes IL-6
T3648 82-85 http://www.uniprot.org/uniprot/P01375 denotes TNF

GO-BP

Id Subject Object Predicate Lexical cue
T1100 231-244 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T1097 191-209 http://purl.obolibrary.org/obo/GO_0007165 denotes signaling pathways
T1089 191-200 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

GO-MF

Id Subject Object Predicate Lexical cue
T1171 96-110 http://purl.obolibrary.org/obo/GO_0005151 denotes IL-1) and type
T1170 96-110 http://purl.obolibrary.org/obo/GO_0005150 denotes IL-1) and type
T1169 96-100 http://purl.obolibrary.org/obo/GO_0005149 denotes IL-1
T1168 87-91 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6

GO-CC

Id Subject Object Predicate Lexical cue
T1202 45-49 http://purl.obolibrary.org/obo/GO_0018995 denotes host

sentences

Id Subject Object Predicate Lexical cue
T913 0-297 Sentence denotes Triggering of PRRs induces the production of host proinflammatory cytokines (e.g. TNF, IL-6 and IL-1) and type I interferons (interferon-α (IFN-α) and IFN-β) through activation of downstream signaling pathways that control various transcription factors such as NF-κB, AP-1, IRF3 and IRF7 [1], [2].
T24 0-297 Sentence denotes Triggering of PRRs induces the production of host proinflammatory cytokines (e.g. TNF, IL-6 and IL-1) and type I interferons (interferon-α (IFN-α) and IFN-β) through activation of downstream signaling pathways that control various transcription factors such as NF-κB, AP-1, IRF3 and IRF7 [1], [2].

simple1

Id Subject Object Predicate Lexical cue
T1290 283-287 Protein denotes IRF7
T1289 274-278 Protein denotes IRF3
T1288 151-156 Protein denotes IFN-β
T1287 140-145 Protein denotes IFN-α
T1286 126-138 Protein denotes interferon-α
T1285 96-100 Protein denotes IL-1
T1284 87-91 Protein denotes IL-6
T1283 82-85 Protein denotes TNF

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4151 19-26 Positive_regulation denotes induces
T4150 31-41 Gene_expression denotes production
T4101 283-287 Protein denotes IRF7
T4100 274-278 Protein denotes IRF3
T4099 151-156 Protein denotes IFN-β
T4098 140-145 Protein denotes IFN-α
T4097 126-138 Protein denotes interferon-α
T4096 96-100 Protein denotes IL-1
T4095 87-91 Protein denotes IL-6
T4094 82-85 Protein denotes TNF
R3090 T4150 T4151 themeOf production,induces
R3091 T4150 T4151 themeOf production,induces
R3093 T4150 T4151 themeOf production,induces
R3039 T4094 T4150 themeOf TNF,production
R3049 T4095 T4150 themeOf IL-6,production
R3053 T4096 T4150 themeOf IL-1,production
R3054 T4097 T4150 themeOf interferon-α,production
R3055 T4098 T4150 themeOf IFN-α,production
R3056 T4099 T4150 themeOf IFN-β,production
R3094 T4150 T4151 themeOf production,induces
R3095 T4150 T4151 themeOf production,induces
R3096 T4150 T4151 themeOf production,induces

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T3740 19-26 Positive_regulation denotes induces
T3739 31-41 Gene_expression denotes production
T3684 87-91 Protein denotes IL-6
T3683 82-85 Protein denotes TNF
T3690 283-287 Protein denotes IRF7
T3689 274-278 Protein denotes IRF3
T3688 151-156 Protein denotes IFN-β
T3687 140-145 Protein denotes IFN-α
T3686 126-138 Protein denotes interferon-α
T3685 96-100 Protein denotes IL-1
R2932 T3683 T3739 themeOf TNF,production
R2933 T3684 T3739 themeOf IL-6,production
R2935 T3687 T3739 themeOf IFN-α,production
R2936 T3688 T3739 themeOf IFN-β,production
R2931 T3685 T3739 themeOf IL-1,production
R2934 T3686 T3739 themeOf interferon-α,production
R2979 T3739 T3740 themeOf production,induces
R2983 T3739 T3740 themeOf production,induces
R2984 T3739 T3740 themeOf production,induces
R2987 T3739 T3740 themeOf production,induces
R2988 T3739 T3740 themeOf production,induces
R2989 T3739 T3740 themeOf production,induces

DLUT931

Id Subject Object Predicate Lexical cue
T3808 19-26 Positive_regulation denotes induces
T3807 31-41 Gene_expression denotes production
T3758 283-287 Protein denotes IRF7
T3757 274-278 Protein denotes IRF3
T3756 151-156 Protein denotes IFN-β
T3755 140-145 Protein denotes IFN-α
T3754 126-138 Protein denotes interferon-α
T3753 96-100 Protein denotes IL-1
T3752 87-91 Protein denotes IL-6
T3751 82-85 Protein denotes TNF
R2974 T3807 T3808 themeOf production,induces
R2975 T3807 T3808 themeOf production,induces
R2976 T3807 T3808 themeOf production,induces
R2977 T3807 T3808 themeOf production,induces
R2978 T3807 T3808 themeOf production,induces
R2938 T3751 T3807 themeOf TNF,production
R2973 T3807 T3808 themeOf production,induces
R2939 T3752 T3807 themeOf IL-6,production
R2940 T3753 T3807 themeOf IL-1,production
R2941 T3754 T3807 themeOf interferon-α,production
R2942 T3755 T3807 themeOf IFN-α,production
R2943 T3756 T3807 themeOf IFN-β,production

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4349 0-18 Positive_regulation denotes Triggering of PRRs
T4338 283-296 Protein denotes IRF7 [1], [2]
T4334 274-278 Protein denotes IRF3
T4315 268-272 Protein denotes AP-1
T4273 126-146 Protein denotes interferon-α (IFN-α)
T4272 87-91 Protein denotes IL-6
T4261 11-18 Protein denotes of PRRs
T4240 96-100 Protein denotes IL-1
T4219 261-266 Protein denotes NF-κB
T4217 82-85 Protein denotes TNF
T4207 66-101 Protein denotes cytokines (e.g. TNF, IL-6 and IL-1)
T4169 151-156 Protein denotes IFN-β
T4185 113-157 Protein denotes interferons (interferon-α (IFN-α) and IFN-β)
T4182 140-145 Protein denotes IFN-α
R3110 T4261 T4349 themeOf of PRRs,Triggering of PRRs

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2584 296-297 . denotes .
T2583 295-296 NNP denotes ]
T2582 294-295 CD denotes 2
T2581 293-294 NNP denotes [
T2580 291-292 , denotes ,
T2579 290-291 NNP denotes ]
T2578 289-290 CD denotes 1
T2577 288-289 NNP denotes [
T2576 283-287 NNP denotes IRF7
T2575 279-282 CC denotes and
T2574 274-278 NNP denotes IRF3
T2573 272-273 , denotes ,
T2572 268-272 NNP denotes AP-1
T2571 266-267 , denotes ,
T2570 261-266 NNP denotes NF-κB
T2569 258-260 IN denotes as
T2568 253-257 JJ denotes such
T2567 245-252 NNS denotes factors
T2566 231-244 NN denotes transcription
T2565 223-230 JJ denotes various
T2564 215-222 VBP denotes control
T2563 210-214 WDT denotes that
T2562 201-209 NNS denotes pathways
T2561 191-200 VBG denotes signaling
T2560 180-190 JJ denotes downstream
T2559 177-179 IN denotes of
T2558 166-176 NN denotes activation
T2557 158-165 IN denotes through
T2556 156-157 -RRB- denotes )
T2555 151-156 NNP denotes IFN-β
T2554 147-150 CC denotes and
T2553 145-146 -RRB- denotes )
T2552 140-145 JJ denotes IFN-α
T2551 139-140 -LRB- denotes (
T2550 126-138 JJ denotes interferon-α
T2549 125-126 -LRB- denotes (
T2548 113-124 VBZ denotes interferons
T2547 111-112 PRP denotes I
T2546 106-110 NN denotes type
T2545 102-105 CC denotes and
T2544 100-101 -RRB- denotes )
T2543 96-100 NNP denotes IL-1
T2542 92-95 CC denotes and
T2541 87-91 NNP denotes IL-6
T2540 85-86 , denotes ,
T2539 82-85 NNP denotes TNF
T2538 77-81 FW denotes e.g.
T2537 76-77 -LRB- denotes (
T2536 66-75 NNS denotes cytokines
T2535 50-65 JJ denotes proinflammatory
T2534 45-49 NN denotes host
T2533 42-44 IN denotes of
T2532 31-41 NN denotes production
T2531 27-30 DT denotes the
T2530 19-26 VBZ denotes induces
T2529 14-18 NNS denotes PRRs
T2528 11-13 IN denotes of
T2527 0-10 VBG denotes Triggering
R1781 T2546 T2539 conj type,TNF
R1783 T2547 T2548 nsubj I,interferons
R1784 T2548 T2536 parataxis interferons,cytokines
R1786 T2549 T2552 punct (,IFN-α
R1787 T2550 T2552 amod interferon-α,IFN-α
R1789 T2551 T2552 punct (,IFN-α
R1791 T2552 T2548 appos IFN-α,interferons
R1792 T2553 T2552 punct ),IFN-α
R1794 T2554 T2548 cc and,interferons
R1795 T2555 T2548 conj IFN-β,interferons
R1796 T2556 T2548 punct ),interferons
R1798 T2557 T2530 prep through,induces
R1799 T2558 T2557 pobj activation,through
R1801 T2559 T2558 prep of,activation
R1802 T2560 T2562 amod downstream,pathways
R1803 T2561 T2562 compound signaling,pathways
R1805 T2562 T2559 pobj pathways,of
R1806 T2563 T2564 nsubj that,control
R1808 T2564 T2562 relcl control,pathways
R1809 T2565 T2567 amod various,factors
R1811 T2566 T2567 compound transcription,factors
R1812 T2567 T2564 dobj factors,control
R1813 T2568 T2569 amod such,as
R1815 T2569 T2567 prep as,factors
R1816 T2570 T2569 pobj NF-κB,as
R1817 T2571 T2570 punct ",",NF-κB
R1818 T2572 T2570 conj AP-1,NF-κB
R1820 T2573 T2572 punct ",",AP-1
R1821 T2574 T2572 conj IRF3,AP-1
R1823 T2575 T2574 cc and,IRF3
R1824 T2576 T2577 compound IRF7,[
R1825 T2577 T2574 conj [,IRF3
R1826 T2578 T2579 nummod 1,]
R1828 T2579 T2577 conj ],[
R1829 T2580 T2579 punct ",",]
R1830 T2581 T2583 nmod [,]
R1831 T2582 T2583 nummod 2,]
R1832 T2583 T2579 conj ],]
R1833 T2584 T2530 punct .,induces
R1890 T2527 T2530 csubj Triggering,induces
R1894 T2528 T2527 prep of,Triggering
R1896 T2529 T2528 pobj PRRs,of
R1897 T2530 T2530 ROOT induces,induces
R1901 T2531 T2532 det the,production
R1905 T2532 T2530 dobj production,induces
R1908 T2533 T2532 prep of,production
R1912 T2534 T2536 nmod host,cytokines
R1915 T2535 T2536 compound proinflammatory,cytokines
R1916 T2536 T2533 pobj cytokines,of
R1917 T2537 T2548 punct (,interferons
R1918 T2538 T2539 compound e.g.,TNF
R1922 T2539 T2548 nmod TNF,interferons
R1925 T2540 T2539 punct ",",TNF
R1932 T2541 T2539 conj IL-6,TNF
R1936 T2542 T2541 cc and,IL-6
R1940 T2543 T2541 conj IL-1,IL-6
R1943 T2544 T2543 punct ),IL-1
R1947 T2545 T2539 cc and,TNF

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T3910 19-26 Positive_regulation denotes induces
T3909 19-26 Positive_regulation denotes induces
T3908 19-26 Positive_regulation denotes induces
T3907 19-26 Positive_regulation denotes induces
T3906 19-26 Positive_regulation denotes induces
T3905 19-26 Positive_regulation denotes induces
T3904 19-26 Positive_regulation denotes induces
T3903 31-41 Gene_expression denotes production
T3902 31-41 Gene_expression denotes production
T3901 31-41 Gene_expression denotes production
T3900 31-41 Gene_expression denotes production
T3899 31-41 Gene_expression denotes production
T3898 31-41 Gene_expression denotes production
T3897 31-41 Gene_expression denotes production
T3896 283-291 Protein denotes IRF7 [1]
T3895 274-278 Protein denotes IRF3
T3894 268-272 Protein denotes AP-1
T3893 261-266 Protein denotes NF-κB
T3892 151-156 Protein denotes IFN-β
T3891 140-145 Protein denotes IFN-α
T3890 126-138 Protein denotes interferon-α
T3889 106-124 Protein denotes type I interferons
T3888 96-100 Protein denotes IL-1
T3887 87-91 Protein denotes IL-6
T3886 82-85 Protein denotes TNF
R3002 T3886 T3897 themeOf TNF,production
R3003 T3887 T3898 themeOf IL-6,production
R3004 T3888 T3899 themeOf IL-1,production
R3005 T3889 T3900 themeOf type I interferons,production
R3006 T3890 T3901 themeOf interferon-α,production
R3007 T3891 T3902 themeOf IFN-α,production
R3008 T3892 T3903 themeOf IFN-β,production
R3010 T3897 T3904 themeOf production,induces
R3012 T3898 T3905 themeOf production,induces
R3019 T3899 T3906 themeOf production,induces
R3020 T3900 T3907 themeOf production,induces
R3021 T3901 T3908 themeOf production,induces
R3024 T3902 T3909 themeOf production,induces
R3026 T3903 T3910 themeOf production,induces

testone

Id Subject Object Predicate Lexical cue
T723 283-287 Protein denotes IRF7
T722 274-278 Protein denotes IRF3
T721 151-156 Protein denotes IFN-β
T720 140-145 Protein denotes IFN-α
T719 126-138 Protein denotes interferon-α
T718 96-100 Protein denotes IL-1
T717 87-91 Protein denotes IL-6
T716 82-85 Protein denotes TNF
R518 T720 T718 equivalentTo IFN-α,IL-1
R519 T720 T717 equivalentTo IFN-α,IL-6
R520 T720 T716 equivalentTo IFN-α,TNF