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PMC:3291650 / 30319-30606 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T11692 245-255 Negative_regulation denotes deficiency
T11691 146-151 Protein denotes RIG-I
T11690 91-101 Gene_expression denotes expression
T11643 146-151 Protein denotes RIG-I

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12870 276-286 NN denotes conditions
T12869 262-275 JJ denotes physiological
T12868 256-261 IN denotes under
T12867 245-255 NN denotes deficiency
T12866 241-244 NN denotes A20
T12865 237-240 IN denotes for
T12864 226-236 VB denotes substitute
T12863 222-225 RB denotes not
T12862 219-222 MD denotes can
T12861 214-218 NN denotes DUBs
T12860 208-213 JJ denotes other
T12859 203-207 IN denotes that
T12858 199-202 CC denotes and
T12857 189-198 NN denotes infection
T12856 185-188 NN denotes IAV
T12855 182-184 TO denotes to
T12854 173-181 NN denotes response
T12853 170-172 IN denotes in
T12852 160-169 NN denotes signaling
T12851 152-159 VB denotes induced
T12850 146-151 NN denotes RIG-I
T12849 143-145 IN denotes of
T12848 132-142 NN denotes gatekeeper
T12847 124-131 JJ denotes central
T12846 122-123 DT denotes a
T12845 119-121 VB denotes is
T12844 113-118 NN denotes cells
T12843 105-112 JJ denotes myeloid
T12842 102-104 IN denotes in
T12841 91-101 NN denotes expression
T12840 87-90 NN denotes A20
T12839 82-86 IN denotes that
T12838 72-81 VB denotes indicates
T12837 63-71 VB denotes describe
T12836 58-62 RB denotes here
T12835 55-57 PRP denotes we
T12834 50-54 IN denotes that
T12833 45-49 NN denotes mice
T12832 34-44 NN denotes A20myel-KO
T12831 31-33 IN denotes of
T12830 21-30 NN denotes phenotype
T12829 10-20 JJ denotes protective
T12828 4-9 JJ denotes clear
T12827 0-3 DT denotes The
R9382 T12830 T12827 arg1Of phenotype,The
R9383 T12830 T12828 arg1Of phenotype,clear
R9384 T12830 T12829 arg1Of phenotype,protective
R9385 T12830 T12831 arg1Of phenotype,of
R9386 T12830 T12834 arg1Of phenotype,that
R9387 T12830 T12837 arg2Of phenotype,describe
R9388 T12830 T12838 arg1Of phenotype,indicates
R9389 T12833 T12831 arg2Of mice,of
R9390 T12833 T12832 arg1Of mice,A20myel-KO
R9391 T12835 T12837 arg1Of we,describe
R9392 T12837 T12836 arg1Of describe,here
R9393 T12841 T12840 arg1Of expression,A20
R9394 T12841 T12842 arg1Of expression,in
R9395 T12841 T12845 arg1Of expression,is
R9396 T12844 T12842 arg2Of cells,in
R9397 T12844 T12843 arg1Of cells,myeloid
R9398 T12845 T12839 arg1Of is,that
R9399 T12845 T12853 arg1Of is,in
R9400 T12845 T12858 arg1Of is,and
R9401 T12848 T12845 arg2Of gatekeeper,is
R9402 T12848 T12846 arg1Of gatekeeper,a
R9403 T12848 T12847 arg1Of gatekeeper,central
R9404 T12848 T12849 arg1Of gatekeeper,of
R9405 T12852 T12849 arg2Of signaling,of
R9406 T12852 T12850 arg1Of signaling,RIG-I
R9407 T12852 T12851 arg2Of signaling,induced
R9408 T12853 T12855 arg1Of in,to
R9409 T12854 T12853 arg2Of response,in
R9410 T12857 T12853 arg3Of infection,in
R9411 T12857 T12856 arg1Of infection,IAV
R9412 T12858 T12838 arg2Of and,indicates
R9413 T12859 T12858 arg2Of that,and
R9414 T12861 T12860 arg1Of DUBs,other
R9415 T12861 T12862 arg1Of DUBs,can
R9416 T12861 T12864 arg1Of DUBs,substitute
R9417 T12864 T12859 arg2Of substitute,that
R9418 T12864 T12862 arg2Of substitute,can
R9419 T12864 T12863 arg1Of substitute,not
R9420 T12864 T12865 arg1Of substitute,for
R9421 T12864 T12868 arg1Of substitute,under
R9422 T12867 T12865 arg2Of deficiency,for
R9423 T12867 T12866 arg1Of deficiency,A20
R9424 T12870 T12868 arg2Of conditions,under
R9425 T12870 T12869 arg1Of conditions,physiological

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11844 146-151 Protein denotes RIG-I

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T14273 241-244 http://www.uniprot.org/uniprot/P21580 denotes A20
T14272 87-90 http://www.uniprot.org/uniprot/P21580 denotes A20

UBERON-AE

Id Subject Object Predicate Lexical cue
T11701 124-131 http://purl.obolibrary.org/obo/UBERON_0012131 denotes central

GO-BP

Id Subject Object Predicate Lexical cue
T11890 160-169 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

GO-CC

Id Subject Object Predicate Lexical cue
T11935 113-118 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T11730 0-287 Sentence denotes The clear protective phenotype of A20myel-KO mice that we here describe indicates that A20 expression in myeloid cells is a central gatekeeper of RIG-I induced signaling in response to IAV infection and that other DUBs cannot substitute for A20 deficiency under physiological conditions.
T184 0-287 Sentence denotes The clear protective phenotype of A20myel-KO mice that we here describe indicates that A20 expression in myeloid cells is a central gatekeeper of RIG-I induced signaling in response to IAV infection and that other DUBs cannot substitute for A20 deficiency under physiological conditions.

simple1

Id Subject Object Predicate Lexical cue
T11998 146-151 Protein denotes RIG-I

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14585 146-151 Protein denotes RIG-I

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T14325 146-151 Protein denotes RIG-I

DLUT931

Id Subject Object Predicate Lexical cue
T14386 132-142 Regulation denotes gatekeeper
T14385 152-159 Positive_regulation denotes induced
T14366 146-151 Protein denotes RIG-I
R10844 T14366 T14385 themeOf RIG-I,induced
R10866 T14385 T14386 themeOf induced,gatekeeper

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T14760 87-118 Gene_expression denotes A20 expression in myeloid cells
T14752 146-159 Gene_expression denotes RIG-I induced
T14751 146-159 Positive_regulation denotes RIG-I induced
T14738 146-169 Positive_regulation denotes RIG-I induced signaling
T14718 87-90 Protein denotes A20
T14705 146-159 Protein denotes RIG-I induced
T14688 45-49 Protein denotes mice
T14669 237-255 Protein denotes for A20 deficiency
T14638 105-118 Entity denotes myeloid cells
T14622 208-218 Protein denotes other DUBs
R10954 T14705 T14738 causeOf RIG-I induced,RIG-I induced signaling
R10955 T14705 T14751 themeOf RIG-I induced,RIG-I induced
R10956 T14705 T14752 themeOf RIG-I induced,RIG-I induced
R10958 T14718 T14760 themeOf A20,A20 expression in myeloid cells

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T14010 286-287 . denotes .
T14009 276-286 NNS denotes conditions
T14008 262-275 JJ denotes physiological
T14007 256-261 IN denotes under
T14006 245-255 NN denotes deficiency
T14005 241-244 NNP denotes A20
T14004 237-240 IN denotes for
T14003 226-236 VB denotes substitute
T14002 222-225 RB denotes not
T14001 219-222 MD denotes can
T14000 214-218 NNS denotes DUBs
T13999 208-213 JJ denotes other
T13998 203-207 IN denotes that
T13997 199-202 CC denotes and
T13996 189-198 NN denotes infection
T13995 185-188 NNP denotes IAV
T13994 182-184 TO denotes to
T13993 173-181 NN denotes response
T13992 170-172 IN denotes in
T13991 160-169 VBG denotes signaling
T13990 152-159 VBD denotes induced
T13989 146-151 NNP denotes RIG-I
T13988 143-145 IN denotes of
T13987 132-142 NN denotes gatekeeper
T13986 124-131 JJ denotes central
T13985 122-123 DT denotes a
T13984 119-121 VBZ denotes is
T13983 113-118 NNS denotes cells
T13982 105-112 JJ denotes myeloid
T13981 102-104 IN denotes in
T13980 91-101 NN denotes expression
T13979 87-90 NNP denotes A20
T13978 82-86 IN denotes that
T13977 72-81 VBZ denotes indicates
T13976 63-71 VBP denotes describe
T13975 58-62 RB denotes here
T13974 55-57 PRP denotes we
T13973 50-54 IN denotes that
T13972 45-49 NNS denotes mice
T13971 34-44 JJ denotes A20myel-KO
T13970 31-33 IN denotes of
T13969 21-30 NN denotes phenotype
T13968 10-20 JJ denotes protective
T13967 4-9 JJ denotes clear
T13966 0-3 DT denotes The
R10436 T13966 T13969 det The,phenotype
R10439 T13967 T13969 amod clear,phenotype
R10443 T13968 T13969 amod protective,phenotype
R10446 T13969 T13977 nsubj phenotype,indicates
R10450 T13970 T13969 prep of,phenotype
R10453 T13971 T13972 amod A20myel-KO,mice
R10458 T13972 T13970 pobj mice,of
R10462 T13973 T13976 dobj that,describe
R10466 T13974 T13976 nsubj we,describe
R10469 T13975 T13976 advmod here,describe
R10474 T13976 T13972 relcl describe,mice
R10476 T13977 T13977 ROOT indicates,indicates
R10477 T13978 T13984 mark that,is
R10480 T13979 T13980 compound A20,expression
R10486 T13980 T13984 nsubj expression,is
R10487 T13981 T13980 prep in,expression
R10490 T13982 T13983 amod myeloid,cells
R10494 T13983 T13981 pobj cells,in
R10498 T13984 T13977 ccomp is,indicates
R10501 T13985 T13987 det a,gatekeeper
R10504 T13986 T13987 amod central,gatekeeper
R10508 T13987 T13984 attr gatekeeper,is
R10513 T13988 T13987 prep of,gatekeeper
R10517 T13989 T13988 pobj RIG-I,of
R10521 T13990 T13987 acl induced,gatekeeper
R10524 T13991 T13990 xcomp signaling,induced
R10528 T13992 T13991 prep in,signaling
R10531 T13993 T13992 pobj response,in
R10538 T13994 T13993 prep to,response
R10542 T13995 T13996 compound IAV,infection
R10546 T13996 T13994 pobj infection,to
R10550 T13997 T13990 cc and,induced
R10554 T13998 T14003 mark that,substitute
R10557 T13999 T14000 amod other,DUBs
R10561 T14000 T14003 nsubj DUBs,substitute
R10564 T14001 T14003 aux can,substitute
R10565 T14002 T14003 neg not,substitute
R10566 T14003 T13990 conj substitute,induced
R10567 T14004 T14003 prep for,substitute
R10568 T14005 T14006 compound A20,deficiency
R10571 T14006 T14004 pobj deficiency,for
R10573 T14007 T14003 prep under,substitute
R10574 T14008 T14009 amod physiological,conditions
R10577 T14009 T14007 pobj conditions,under
R10580 T14010 T13977 punct .,indicates

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T14485 91-101 Gene_expression denotes expression
T14484 146-151 Protein denotes RIG-I
T14483 87-90 Protein denotes A20
R10904 T14483 T14485 themeOf A20,expression

testone

Id Subject Object Predicate Lexical cue
T11612 245-255 Negative_regulation denotes deficiency
T11611 91-101 Gene_expression denotes expression
T11596 146-151 Protein denotes RIG-I