
PMC:3291650 / 30319-30606
Annnotations
test3
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11692 | 245-255 | Negative_regulation | denotes | deficiency |
T11691 | 146-151 | Protein | denotes | RIG-I |
T11690 | 91-101 | Gene_expression | denotes | expression |
T11643 | 146-151 | Protein | denotes | RIG-I |
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12870 | 276-286 | NN | denotes | conditions |
T12869 | 262-275 | JJ | denotes | physiological |
T12868 | 256-261 | IN | denotes | under |
T12867 | 245-255 | NN | denotes | deficiency |
T12866 | 241-244 | NN | denotes | A20 |
T12865 | 237-240 | IN | denotes | for |
T12864 | 226-236 | VB | denotes | substitute |
T12863 | 222-225 | RB | denotes | not |
T12862 | 219-222 | MD | denotes | can |
T12861 | 214-218 | NN | denotes | DUBs |
T12860 | 208-213 | JJ | denotes | other |
T12859 | 203-207 | IN | denotes | that |
T12858 | 199-202 | CC | denotes | and |
T12857 | 189-198 | NN | denotes | infection |
T12856 | 185-188 | NN | denotes | IAV |
T12855 | 182-184 | TO | denotes | to |
T12854 | 173-181 | NN | denotes | response |
T12853 | 170-172 | IN | denotes | in |
T12852 | 160-169 | NN | denotes | signaling |
T12851 | 152-159 | VB | denotes | induced |
T12850 | 146-151 | NN | denotes | RIG-I |
T12849 | 143-145 | IN | denotes | of |
T12848 | 132-142 | NN | denotes | gatekeeper |
T12847 | 124-131 | JJ | denotes | central |
T12846 | 122-123 | DT | denotes | a |
T12845 | 119-121 | VB | denotes | is |
T12844 | 113-118 | NN | denotes | cells |
T12843 | 105-112 | JJ | denotes | myeloid |
T12842 | 102-104 | IN | denotes | in |
T12841 | 91-101 | NN | denotes | expression |
T12840 | 87-90 | NN | denotes | A20 |
T12839 | 82-86 | IN | denotes | that |
T12838 | 72-81 | VB | denotes | indicates |
T12837 | 63-71 | VB | denotes | describe |
T12836 | 58-62 | RB | denotes | here |
T12835 | 55-57 | PRP | denotes | we |
T12834 | 50-54 | IN | denotes | that |
T12833 | 45-49 | NN | denotes | mice |
T12832 | 34-44 | NN | denotes | A20myel-KO |
T12831 | 31-33 | IN | denotes | of |
T12830 | 21-30 | NN | denotes | phenotype |
T12829 | 10-20 | JJ | denotes | protective |
T12828 | 4-9 | JJ | denotes | clear |
T12827 | 0-3 | DT | denotes | The |
R9382 | T12830 | T12827 | arg1Of | phenotype,The |
R9383 | T12830 | T12828 | arg1Of | phenotype,clear |
R9384 | T12830 | T12829 | arg1Of | phenotype,protective |
R9385 | T12830 | T12831 | arg1Of | phenotype,of |
R9386 | T12830 | T12834 | arg1Of | phenotype,that |
R9387 | T12830 | T12837 | arg2Of | phenotype,describe |
R9388 | T12830 | T12838 | arg1Of | phenotype,indicates |
R9389 | T12833 | T12831 | arg2Of | mice,of |
R9390 | T12833 | T12832 | arg1Of | mice,A20myel-KO |
R9391 | T12835 | T12837 | arg1Of | we,describe |
R9392 | T12837 | T12836 | arg1Of | describe,here |
R9393 | T12841 | T12840 | arg1Of | expression,A20 |
R9394 | T12841 | T12842 | arg1Of | expression,in |
R9395 | T12841 | T12845 | arg1Of | expression,is |
R9396 | T12844 | T12842 | arg2Of | cells,in |
R9397 | T12844 | T12843 | arg1Of | cells,myeloid |
R9398 | T12845 | T12839 | arg1Of | is,that |
R9399 | T12845 | T12853 | arg1Of | is,in |
R9400 | T12845 | T12858 | arg1Of | is,and |
R9401 | T12848 | T12845 | arg2Of | gatekeeper,is |
R9402 | T12848 | T12846 | arg1Of | gatekeeper,a |
R9403 | T12848 | T12847 | arg1Of | gatekeeper,central |
R9404 | T12848 | T12849 | arg1Of | gatekeeper,of |
R9405 | T12852 | T12849 | arg2Of | signaling,of |
R9406 | T12852 | T12850 | arg1Of | signaling,RIG-I |
R9407 | T12852 | T12851 | arg2Of | signaling,induced |
R9408 | T12853 | T12855 | arg1Of | in,to |
R9409 | T12854 | T12853 | arg2Of | response,in |
R9410 | T12857 | T12853 | arg3Of | infection,in |
R9411 | T12857 | T12856 | arg1Of | infection,IAV |
R9412 | T12858 | T12838 | arg2Of | and,indicates |
R9413 | T12859 | T12858 | arg2Of | that,and |
R9414 | T12861 | T12860 | arg1Of | DUBs,other |
R9415 | T12861 | T12862 | arg1Of | DUBs,can |
R9416 | T12861 | T12864 | arg1Of | DUBs,substitute |
R9417 | T12864 | T12859 | arg2Of | substitute,that |
R9418 | T12864 | T12862 | arg2Of | substitute,can |
R9419 | T12864 | T12863 | arg1Of | substitute,not |
R9420 | T12864 | T12865 | arg1Of | substitute,for |
R9421 | T12864 | T12868 | arg1Of | substitute,under |
R9422 | T12867 | T12865 | arg2Of | deficiency,for |
R9423 | T12867 | T12866 | arg1Of | deficiency,A20 |
R9424 | T12870 | T12868 | arg2Of | conditions,under |
R9425 | T12870 | T12869 | arg1Of | conditions,physiological |
bionlp-st-ge-2016-test-proteins
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11844 | 146-151 | Protein | denotes | RIG-I |
bionlp-st-ge-2016-uniprot
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T14273 | 241-244 | http://www.uniprot.org/uniprot/P21580 | denotes | A20 |
T14272 | 87-90 | http://www.uniprot.org/uniprot/P21580 | denotes | A20 |
UBERON-AE
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11701 | 124-131 | http://purl.obolibrary.org/obo/UBERON_0012131 | denotes | central |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11890 | 160-169 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
GO-CC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11935 | 113-118 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11730 | 0-287 | Sentence | denotes | The clear protective phenotype of A20myel-KO mice that we here describe indicates that A20 expression in myeloid cells is a central gatekeeper of RIG-I induced signaling in response to IAV infection and that other DUBs cannot substitute for A20 deficiency under physiological conditions. |
T184 | 0-287 | Sentence | denotes | The clear protective phenotype of A20myel-KO mice that we here describe indicates that A20 expression in myeloid cells is a central gatekeeper of RIG-I induced signaling in response to IAV infection and that other DUBs cannot substitute for A20 deficiency under physiological conditions. |
simple1
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11998 | 146-151 | Protein | denotes | RIG-I |
BioNLP16_DUT
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T14585 | 146-151 | Protein | denotes | RIG-I |
BioNLP16_Messiy
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T14325 | 146-151 | Protein | denotes | RIG-I |
DLUT931
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T14386 | 132-142 | Regulation | denotes | gatekeeper |
T14385 | 152-159 | Positive_regulation | denotes | induced |
T14366 | 146-151 | Protein | denotes | RIG-I |
R10844 | T14366 | T14385 | themeOf | RIG-I,induced |
R10866 | T14385 | T14386 | themeOf | induced,gatekeeper |
bionlp-st-ge-2016-test-ihmc
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T14760 | 87-118 | Gene_expression | denotes | A20 expression in myeloid cells |
T14752 | 146-159 | Gene_expression | denotes | RIG-I induced |
T14751 | 146-159 | Positive_regulation | denotes | RIG-I induced |
T14738 | 146-169 | Positive_regulation | denotes | RIG-I induced signaling |
T14718 | 87-90 | Protein | denotes | A20 |
T14705 | 146-159 | Protein | denotes | RIG-I induced |
T14688 | 45-49 | Protein | denotes | mice |
T14669 | 237-255 | Protein | denotes | for A20 deficiency |
T14638 | 105-118 | Entity | denotes | myeloid cells |
T14622 | 208-218 | Protein | denotes | other DUBs |
R10954 | T14705 | T14738 | causeOf | RIG-I induced,RIG-I induced signaling |
R10955 | T14705 | T14751 | themeOf | RIG-I induced,RIG-I induced |
R10956 | T14705 | T14752 | themeOf | RIG-I induced,RIG-I induced |
R10958 | T14718 | T14760 | themeOf | A20,A20 expression in myeloid cells |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T14010 | 286-287 | . | denotes | . |
T14009 | 276-286 | NNS | denotes | conditions |
T14008 | 262-275 | JJ | denotes | physiological |
T14007 | 256-261 | IN | denotes | under |
T14006 | 245-255 | NN | denotes | deficiency |
T14005 | 241-244 | NNP | denotes | A20 |
T14004 | 237-240 | IN | denotes | for |
T14003 | 226-236 | VB | denotes | substitute |
T14002 | 222-225 | RB | denotes | not |
T14001 | 219-222 | MD | denotes | can |
T14000 | 214-218 | NNS | denotes | DUBs |
T13999 | 208-213 | JJ | denotes | other |
T13998 | 203-207 | IN | denotes | that |
T13997 | 199-202 | CC | denotes | and |
T13996 | 189-198 | NN | denotes | infection |
T13995 | 185-188 | NNP | denotes | IAV |
T13994 | 182-184 | TO | denotes | to |
T13993 | 173-181 | NN | denotes | response |
T13992 | 170-172 | IN | denotes | in |
T13991 | 160-169 | VBG | denotes | signaling |
T13990 | 152-159 | VBD | denotes | induced |
T13989 | 146-151 | NNP | denotes | RIG-I |
T13988 | 143-145 | IN | denotes | of |
T13987 | 132-142 | NN | denotes | gatekeeper |
T13986 | 124-131 | JJ | denotes | central |
T13985 | 122-123 | DT | denotes | a |
T13984 | 119-121 | VBZ | denotes | is |
T13983 | 113-118 | NNS | denotes | cells |
T13982 | 105-112 | JJ | denotes | myeloid |
T13981 | 102-104 | IN | denotes | in |
T13980 | 91-101 | NN | denotes | expression |
T13979 | 87-90 | NNP | denotes | A20 |
T13978 | 82-86 | IN | denotes | that |
T13977 | 72-81 | VBZ | denotes | indicates |
T13976 | 63-71 | VBP | denotes | describe |
T13975 | 58-62 | RB | denotes | here |
T13974 | 55-57 | PRP | denotes | we |
T13973 | 50-54 | IN | denotes | that |
T13972 | 45-49 | NNS | denotes | mice |
T13971 | 34-44 | JJ | denotes | A20myel-KO |
T13970 | 31-33 | IN | denotes | of |
T13969 | 21-30 | NN | denotes | phenotype |
T13968 | 10-20 | JJ | denotes | protective |
T13967 | 4-9 | JJ | denotes | clear |
T13966 | 0-3 | DT | denotes | The |
R10436 | T13966 | T13969 | det | The,phenotype |
R10439 | T13967 | T13969 | amod | clear,phenotype |
R10443 | T13968 | T13969 | amod | protective,phenotype |
R10446 | T13969 | T13977 | nsubj | phenotype,indicates |
R10450 | T13970 | T13969 | prep | of,phenotype |
R10453 | T13971 | T13972 | amod | A20myel-KO,mice |
R10458 | T13972 | T13970 | pobj | mice,of |
R10462 | T13973 | T13976 | dobj | that,describe |
R10466 | T13974 | T13976 | nsubj | we,describe |
R10469 | T13975 | T13976 | advmod | here,describe |
R10474 | T13976 | T13972 | relcl | describe,mice |
R10476 | T13977 | T13977 | ROOT | indicates,indicates |
R10477 | T13978 | T13984 | mark | that,is |
R10480 | T13979 | T13980 | compound | A20,expression |
R10486 | T13980 | T13984 | nsubj | expression,is |
R10487 | T13981 | T13980 | prep | in,expression |
R10490 | T13982 | T13983 | amod | myeloid,cells |
R10494 | T13983 | T13981 | pobj | cells,in |
R10498 | T13984 | T13977 | ccomp | is,indicates |
R10501 | T13985 | T13987 | det | a,gatekeeper |
R10504 | T13986 | T13987 | amod | central,gatekeeper |
R10508 | T13987 | T13984 | attr | gatekeeper,is |
R10513 | T13988 | T13987 | prep | of,gatekeeper |
R10517 | T13989 | T13988 | pobj | RIG-I,of |
R10521 | T13990 | T13987 | acl | induced,gatekeeper |
R10524 | T13991 | T13990 | xcomp | signaling,induced |
R10528 | T13992 | T13991 | prep | in,signaling |
R10531 | T13993 | T13992 | pobj | response,in |
R10538 | T13994 | T13993 | prep | to,response |
R10542 | T13995 | T13996 | compound | IAV,infection |
R10546 | T13996 | T13994 | pobj | infection,to |
R10550 | T13997 | T13990 | cc | and,induced |
R10554 | T13998 | T14003 | mark | that,substitute |
R10557 | T13999 | T14000 | amod | other,DUBs |
R10561 | T14000 | T14003 | nsubj | DUBs,substitute |
R10564 | T14001 | T14003 | aux | can,substitute |
R10565 | T14002 | T14003 | neg | not,substitute |
R10566 | T14003 | T13990 | conj | substitute,induced |
R10567 | T14004 | T14003 | prep | for,substitute |
R10568 | T14005 | T14006 | compound | A20,deficiency |
R10571 | T14006 | T14004 | pobj | deficiency,for |
R10573 | T14007 | T14003 | prep | under,substitute |
R10574 | T14008 | T14009 | amod | physiological,conditions |
R10577 | T14009 | T14007 | pobj | conditions,under |
R10580 | T14010 | T13977 | punct | .,indicates |
bionlp-st-ge-2016-test-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T14485 | 91-101 | Gene_expression | denotes | expression |
T14484 | 146-151 | Protein | denotes | RIG-I |
T14483 | 87-90 | Protein | denotes | A20 |
R10904 | T14483 | T14485 | themeOf | A20,expression |
testone
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11612 | 245-255 | Negative_regulation | denotes | deficiency |
T11611 | 91-101 | Gene_expression | denotes | expression |
T11596 | 146-151 | Protein | denotes | RIG-I |