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PMC:3291650 / 29988-30211 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T11689 184-189 Protein denotes IRF-3
T11688 155-160 Protein denotes RIG-I
T11687 146-154 Regulation denotes regulate
T11686 67-71 Protein denotes CYLD
T11642 184-189 Protein denotes IRF-3
T11641 155-160 Protein denotes RIG-I
T11640 67-71 Protein denotes CYLD
R8480 T11689 T11687 themeOf IRF-3,regulate

2_test

Id Subject Object Predicate Lexical cue
22396652-17991829-98461883 62-64 17991829 denotes 28
22396652-18467330-98461884 73-75 18467330 denotes 29
22396652-18636086-98461885 79-81 18636086 denotes 30
22396652-19996094-98461886 93-95 19996094 denotes 31
22396652-16765340-98461887 107-109 16765340 denotes 49
22396652-15661910-98461888 112-114 15661910 denotes 52

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12809 212-222 NN denotes redundancy
T12808 203-211 JJ denotes possible
T12807 191-202 VB denotes implicating
T12806 189-190 -COMMA- denotes ,
T12805 184-189 NN denotes IRF-3
T12804 180-183 CC denotes and
T12803 174-179 NN denotes NF-κB
T12802 171-173 TO denotes to
T12801 161-170 NN denotes signaling
T12800 155-160 NN denotes RIG-I
T12799 146-154 VB denotes regulate
T12798 135-145 RB denotes negatively
T12797 132-134 TO denotes to
T12796 126-131 VB denotes shown
T12795 121-125 VB denotes been
T12794 116-120 VB denotes have
T12793 114-115 -RRB- denotes ]
T12792 112-114 CD denotes 52
T12791 111-112 -LRB- denotes [
T12790 110-111 CD denotes –
T12789 109-110 -RRB- denotes ]
T12788 107-109 CD denotes 49
T12787 106-107 -LRB- denotes [
T12786 102-105 NN denotes A20
T12785 98-101 CC denotes and
T12784 96-97 -COMMA- denotes ,
T12783 95-96 -RRB- denotes ]
T12782 93-95 CD denotes 31
T12781 92-93 -LRB- denotes [
T12780 84-91 CD denotes OTUB1/2
T12779 82-83 -COMMA- denotes ,
T12778 81-82 -RRB- denotes ]
T12777 79-81 CD denotes 30
T12776 78-79 -LRB- denotes [
T12775 76-77 -COMMA- denotes ,
T12774 75-76 -RRB- denotes ]
T12773 73-75 CD denotes 29
T12772 72-73 -LRB- denotes [
T12771 67-71 NN denotes CYLD
T12770 65-66 -COMMA- denotes ,
T12769 64-65 -RRB- denotes ]
T12768 62-64 CD denotes 28
T12767 61-62 -LRB- denotes [
T12766 56-60 NNP denotes DUBA
T12765 53-55 IN denotes as
T12764 48-52 JJ denotes such
T12763 46-47 -COMMA- denotes ,
T12762 45-46 -RRB- denotes )
T12761 41-45 NN denotes DUBs
T12760 40-41 -LRB- denotes (
T12759 32-39 NN denotes enzymes
T12758 15-31 VB denotes deubiquitinating
T12757 9-14 JJ denotes other
T12756 0-8 JJ denotes Multiple
R9307 T12759 T12756 arg1Of enzymes,Multiple
R9308 T12759 T12757 arg1Of enzymes,other
R9309 T12759 T12758 arg1Of enzymes,deubiquitinating
R9310 T12759 T12760 arg1Of enzymes,(
R9311 T12759 T12763 arg1Of enzymes,","
R9312 T12759 T12765 arg1Of enzymes,as
R9313 T12761 T12760 arg2Of DUBs,(
R9314 T12762 T12760 arg3Of ),(
R9315 T12765 T12764 arg1Of as,such
R9316 T12766 T12767 arg1Of DUBA,[
R9317 T12766 T12770 arg1Of DUBA,","
R9318 T12768 T12767 arg2Of 28,[
R9319 T12769 T12767 arg3Of ],[
R9320 T12770 T12775 arg1Of ",",","
R9321 T12770 T12776 arg1Of ",",[
R9322 T12770 T12779 arg1Of ",",","
R9323 T12770 T12785 arg1Of ",",and
R9324 T12771 T12770 arg2Of CYLD,","
R9325 T12771 T12772 arg1Of CYLD,[
R9326 T12773 T12772 arg2Of 29,[
R9327 T12774 T12772 arg3Of ],[
R9328 T12777 T12776 arg2Of 30,[
R9329 T12778 T12776 arg3Of ],[
R9330 T12780 T12779 arg2Of OTUB1/2,","
R9331 T12780 T12781 arg1Of OTUB1/2,[
R9332 T12782 T12781 arg2Of 31,[
R9333 T12783 T12781 arg3Of ],[
R9334 T12785 T12765 arg2Of and,as
R9335 T12785 T12784 arg1Of and,","
R9336 T12786 T12785 arg2Of A20,and
R9337 T12786 T12787 arg1Of A20,[
R9338 T12786 T12794 modOf A20,have
R9339 T12788 T12787 arg2Of 49,[
R9340 T12789 T12787 arg3Of ],[
R9341 T12790 T12791 arg1Of –,[
R9342 T12790 T12794 arg1Of –,have
R9343 T12790 T12795 arg1Of –,been
R9344 T12790 T12796 arg2Of –,shown
R9345 T12790 T12799 arg1Of –,regulate
R9346 T12792 T12791 arg2Of 52,[
R9347 T12793 T12791 arg3Of ],[
R9348 T12796 T12794 arg2Of shown,have
R9349 T12796 T12795 arg2Of shown,been
R9350 T12796 T12806 arg1Of shown,","
R9351 T12796 T12807 modOf shown,implicating
R9352 T12799 T12796 arg3Of regulate,shown
R9353 T12799 T12797 arg1Of regulate,to
R9354 T12799 T12798 arg1Of regulate,negatively
R9355 T12801 T12799 arg2Of signaling,regulate
R9356 T12801 T12800 arg1Of signaling,RIG-I
R9357 T12801 T12802 arg1Of signaling,to
R9358 T12803 T12804 arg1Of NF-κB,and
R9359 T12804 T12802 arg2Of and,to
R9360 T12805 T12804 arg2Of IRF-3,and
R9361 T12809 T12807 arg2Of redundancy,implicating
R9362 T12809 T12808 arg1Of redundancy,possible

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11843 184-189 Protein denotes IRF-3
T11842 155-160 Protein denotes RIG-I
T11841 67-71 Protein denotes CYLD

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T14290 184-189 http://www.uniprot.org/uniprot/Q14653 denotes IRF-3
T14271 102-105 http://www.uniprot.org/uniprot/P21580 denotes A20

GO-BP

Id Subject Object Predicate Lexical cue
T11902 15-39 http://purl.obolibrary.org/obo/GO_0004843 denotes deubiquitinating enzymes
T11889 161-170 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T11885 155-170 http://purl.obolibrary.org/obo/GO_0039529 denotes RIG-I signaling

GO-MF

Id Subject Object Predicate Lexical cue
T11924 15-39 http://purl.obolibrary.org/obo/GO_0004843 denotes deubiquitinating enzymes

sentences

Id Subject Object Predicate Lexical cue
T11728 0-223 Sentence denotes Multiple other deubiquitinating enzymes (DUBs), such as DUBA [28], CYLD [29], [30], OTUB1/2 [31], and A20 [49]–[52] have been shown to negatively regulate RIG-I signaling to NF-κB and IRF-3, implicating possible redundancy.
T182 0-223 Sentence denotes Multiple other deubiquitinating enzymes (DUBs), such as DUBA [28], CYLD [29], [30], OTUB1/2 [31], and A20 [49]–[52] have been shown to negatively regulate RIG-I signaling to NF-κB and IRF-3, implicating possible redundancy.

simple1

Id Subject Object Predicate Lexical cue
T11997 184-189 Protein denotes IRF-3
T11996 155-160 Protein denotes RIG-I
T11995 67-71 Protein denotes CYLD

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14584 184-189 Protein denotes IRF-3
T14583 155-160 Protein denotes RIG-I
T14582 67-71 Protein denotes CYLD

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T14323 155-160 Protein denotes RIG-I
T14322 67-71 Protein denotes CYLD
T14324 184-189 Protein denotes IRF-3

DLUT931

Id Subject Object Predicate Lexical cue
T14365 184-189 Protein denotes IRF-3
T14364 155-160 Protein denotes RIG-I
T14363 67-71 Protein denotes CYLD

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T14742 155-170 Positive_regulation denotes RIG-I signaling
T14717 102-110 Protein denotes A20 [49]
T14709 41-45 Protein denotes DUBs
T14690 32-47 Protein denotes enzymes (DUBs),
T14683 0-14 Entity denotes Multiple other
T14680 174-179 Protein denotes NF-κB
T14647 56-66 Protein denotes DUBA [28],
T14640 155-160 Protein denotes RIG-I
T14631 184-189 Protein denotes IRF-3
T14616 56-82 Protein denotes DUBA [28], CYLD [29], [30]
T14609 84-96 Protein denotes OTUB1/2 [31]
R10934 T14640 T14742 causeOf RIG-I,RIG-I signaling

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T13947 222-223 . denotes .
T13946 212-222 NN denotes redundancy
T13945 203-211 JJ denotes possible
T13944 191-202 VBG denotes implicating
T13943 189-190 , denotes ,
T13942 184-189 NNP denotes IRF-3
T13941 180-183 CC denotes and
T13940 174-179 NNP denotes NF-κB
T13939 171-173 TO denotes to
T13938 161-170 VBG denotes signaling
T13937 155-160 NNP denotes RIG-I
T13936 146-154 VB denotes regulate
T13935 135-145 RB denotes negatively
T13934 132-134 TO denotes to
T13933 126-131 VBN denotes shown
T13932 121-125 VBN denotes been
T13931 116-120 VBP denotes have
T13930 114-115 NNP denotes ]
T13929 112-114 CD denotes 52
T13928 111-112 NNP denotes [
T13927 109-110 NNP denotes ]
T13926 107-109 CD denotes 49
T13925 106-107 NNP denotes [
T13924 102-105 NNP denotes A20
T13923 98-101 CC denotes and
T13922 96-97 , denotes ,
T13921 95-96 NNP denotes ]
T13920 93-95 CD denotes 31
T13919 92-93 NNP denotes [
T13918 84-91 NNP denotes OTUB1/2
T13917 82-83 , denotes ,
T13916 81-82 NNP denotes ]
T13915 79-81 CD denotes 30
T13914 78-79 NNP denotes [
T13913 76-77 , denotes ,
T13912 75-76 NNP denotes ]
T13911 73-75 CD denotes 29
T13910 72-73 NNP denotes [
T13909 67-71 NNP denotes CYLD
T13908 65-66 , denotes ,
T13907 64-65 NNP denotes ]
T13906 62-64 CD denotes 28
T13905 61-62 NNP denotes [
T13904 56-60 NNP denotes DUBA
T13903 53-55 IN denotes as
T13902 48-52 JJ denotes such
T13901 46-47 , denotes ,
T13900 45-46 -RRB- denotes )
T13899 41-45 NNS denotes DUBs
T13898 40-41 -LRB- denotes (
T13897 32-39 NNS denotes enzymes
T13896 15-31 VBG denotes deubiquitinating
T13895 9-14 JJ denotes other
T13894 0-8 JJ denotes Multiple
R10488 T13894 T13897 amod Multiple,enzymes
R10489 T13895 T13897 amod other,enzymes
R10491 T13896 T13897 amod deubiquitinating,enzymes
R10492 T13897 T13933 nsubjpass enzymes,shown
R10493 T13898 T13899 punct (,DUBs
R10495 T13899 T13897 appos DUBs,enzymes
R10496 T13900 T13897 punct ),enzymes
R10497 T13901 T13897 punct ",",enzymes
R10499 T13902 T13903 amod such,as
R10500 T13903 T13897 prep as,enzymes
R10502 T13904 T13905 compound DUBA,[
R10503 T13905 T13903 pobj [,as
R10505 T13906 T13907 compound 28,]
R10506 T13907 T13905 conj ],[
R10507 T13908 T13907 punct ",",]
R10509 T13909 T13910 compound CYLD,[
R10510 T13910 T13907 conj [,]
R10511 T13911 T13912 compound 29,]
R10512 T13912 T13907 conj ],]
R10514 T13913 T13912 punct ",",]
R10515 T13914 T13912 conj [,]
R10516 T13915 T13916 nummod 30,]
R10518 T13916 T13912 conj ],]
R10519 T13917 T13916 punct ",",]
R10520 T13918 T13919 compound OTUB1/2,[
R10522 T13919 T13916 conj [,]
R10523 T13920 T13921 nummod 31,]
R10525 T13921 T13928 nmod ],[
R10526 T13922 T13921 punct ",",]
R10527 T13923 T13921 cc and,]
R10529 T13924 T13925 compound A20,[
R10530 T13925 T13921 conj [,]
R10532 T13926 T13927 nummod 49,]
R10533 T13927 T13928 nmod ],[
R10534 T13928 T13930 det [,]
R10535 T13929 T13930 nummod 52,]
R10536 T13930 T13916 conj ],]
R10537 T13931 T13933 aux have,shown
R10539 T13932 T13933 auxpass been,shown
R10540 T13933 T13933 ROOT shown,shown
R10541 T13934 T13936 aux to,regulate
R10543 T13935 T13936 advmod negatively,regulate
R10544 T13936 T13933 xcomp regulate,shown
R10545 T13937 T13938 nsubj RIG-I,signaling
R10547 T13938 T13936 ccomp signaling,regulate
R10548 T13939 T13938 prep to,signaling
R10549 T13940 T13939 pobj NF-κB,to
R10551 T13941 T13940 cc and,NF-κB
R10552 T13942 T13940 conj IRF-3,NF-κB
R10553 T13943 T13938 punct ",",signaling
R10555 T13944 T13933 advcl implicating,shown
R10556 T13945 T13946 amod possible,redundancy
R10558 T13946 T13944 dobj redundancy,implicating
R10559 T13947 T13933 punct .,shown

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T14482 184-189 Protein denotes IRF-3
T14481 174-179 Protein denotes NF-κB
T14480 155-160 Protein denotes RIG-I

testone

Id Subject Object Predicate Lexical cue
T11595 184-189 Protein denotes IRF-3
T11594 155-160 Protein denotes RIG-I
T11593 67-71 Protein denotes CYLD