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PMC:3291650 / 29761-29886 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T11685 97-107 Positive_regulation denotes activation
T11684 92-96 Protein denotes IRF3
T11639 92-96 Protein denotes IRF3
R8479 T11684 T11685 themeOf IRF3,activation

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12740 119-124 NN denotes cells
T12739 111-118 JJ denotes myeloid
T12738 108-110 IN denotes in
T12737 97-107 NN denotes activation
T12736 92-96 NN denotes IRF3
T12735 88-91 CC denotes and
T12734 82-87 NN denotes NF-κB
T12733 74-81 VB denotes mediate
T12732 69-73 WDT denotes that
T12731 58-68 NN denotes substrates
T12730 52-57 JJ denotes other
T12729 44-51 VB denotes targets
T12728 39-43 RB denotes also
T12727 35-38 NN denotes A20
T12726 30-34 IN denotes that
T12725 22-29 RB denotes however
T12724 13-21 VB denotes excluded
T12723 10-12 VB denotes be
T12722 6-9 RB denotes not
T12721 3-6 MD denotes can
T12720 0-2 PRP denotes It
R9270 T12720 T12721 arg1Of It,can
R9271 T12720 T12723 arg1Of It,be
R9272 T12720 T12724 arg2Of It,excluded
R9273 T12724 T12721 arg2Of excluded,can
R9274 T12724 T12722 arg1Of excluded,not
R9275 T12724 T12723 arg2Of excluded,be
R9276 T12724 T12725 arg1Of excluded,however
R9277 T12727 T12726 arg1Of A20,that
R9278 T12727 T12729 arg1Of A20,targets
R9279 T12729 T12725 arg2Of targets,however
R9280 T12729 T12728 arg1Of targets,also
R9281 T12731 T12729 arg2Of substrates,targets
R9282 T12731 T12730 arg1Of substrates,other
R9283 T12731 T12732 arg1Of substrates,that
R9284 T12731 T12733 arg1Of substrates,mediate
R9285 T12733 T12738 arg1Of mediate,in
R9286 T12734 T12735 arg1Of NF-κB,and
R9287 T12735 T12733 arg2Of and,mediate
R9288 T12737 T12735 arg2Of activation,and
R9289 T12737 T12736 arg1Of activation,IRF3
R9290 T12740 T12738 arg2Of cells,in
R9291 T12740 T12739 arg1Of cells,myeloid

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11840 92-96 Protein denotes IRF3

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T14289 92-96 http://www.uniprot.org/uniprot/Q14653 denotes IRF3
T14270 35-38 http://www.uniprot.org/uniprot/P21580 denotes A20

GO-BP

Id Subject Object Predicate Lexical cue
T11901 97-124 http://purl.obolibrary.org/obo/GO_0001773 denotes activation in myeloid cells
T11900 97-124 http://purl.obolibrary.org/obo/GO_0045639 denotes activation in myeloid cells
T11899 97-124 http://purl.obolibrary.org/obo/GO_0033034 denotes activation in myeloid cells

GO-CC

Id Subject Object Predicate Lexical cue
T11934 119-124 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T11726 0-125 Sentence denotes It cannot be excluded however that A20 also targets other substrates that mediate NF-κB and IRF3 activation in myeloid cells.
T180 0-125 Sentence denotes It cannot be excluded however that A20 also targets other substrates that mediate NF-κB and IRF3 activation in myeloid cells.

simple1

Id Subject Object Predicate Lexical cue
T11994 92-96 Protein denotes IRF3

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14596 74-81 Positive_regulation denotes mediate
T14595 97-107 Positive_regulation denotes activation
T14581 92-96 Protein denotes IRF3
R10926 T14581 T14595 themeOf IRF3,activation
R10931 T14595 T14596 themeOf activation,mediate

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T14336 97-107 Positive_regulation denotes activation
T14335 74-81 Positive_regulation denotes mediate
T14321 92-96 Protein denotes IRF3
R10832 T14321 T14336 themeOf IRF3,activation
R10835 T14336 T14335 themeOf activation,mediate

DLUT931

Id Subject Object Predicate Lexical cue
T14384 74-81 Positive_regulation denotes mediate
T14383 97-107 Positive_regulation denotes activation
T14362 92-96 Protein denotes IRF3
R10843 T14362 T14383 themeOf IRF3,activation
R10862 T14383 T14384 themeOf activation,mediate

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T14730 92-107 Positive_regulation denotes IRF3 activation
T14668 52-124 Entity denotes other substrates that mediate NF-κB and IRF3 activation in myeloid cells
T14637 111-124 Entity denotes myeloid cells
T14628 82-87 Protein denotes NF-κB
T14620 30-38 Protein denotes that A20
T14612 92-96 Protein denotes IRF3
R10928 T14612 T14730 themeOf IRF3,IRF3 activation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T13877 124-125 . denotes .
T13876 119-124 NNS denotes cells
T13875 111-118 JJ denotes myeloid
T13874 108-110 IN denotes in
T13873 97-107 NN denotes activation
T13872 92-96 NNP denotes IRF3
T13871 88-91 CC denotes and
T13870 82-87 NNP denotes NF-κB
T13869 74-81 VBP denotes mediate
T13868 69-73 WDT denotes that
T13867 58-68 NNS denotes substrates
T13866 52-57 JJ denotes other
T13865 44-51 VBZ denotes targets
T13864 39-43 RB denotes also
T13863 35-38 NNP denotes A20
T13862 30-34 IN denotes that
T13861 22-29 RB denotes however
T13860 13-21 VBN denotes excluded
T13859 10-12 VB denotes be
T13858 6-9 RB denotes not
T13857 3-6 MD denotes can
T13856 0-2 PRP denotes It
R10434 T13856 T13860 nsubjpass It,excluded
R10435 T13857 T13860 aux can,excluded
R10437 T13858 T13860 neg not,excluded
R10438 T13859 T13860 auxpass be,excluded
R10440 T13860 T13860 ROOT excluded,excluded
R10441 T13861 T13860 advmod however,excluded
R10442 T13862 T13865 mark that,targets
R10444 T13863 T13865 nsubj A20,targets
R10445 T13864 T13865 advmod also,targets
R10447 T13865 T13860 ccomp targets,excluded
R10448 T13866 T13867 amod other,substrates
R10449 T13867 T13865 dobj substrates,targets
R10451 T13868 T13869 nsubj that,mediate
R10452 T13869 T13867 relcl mediate,substrates
R10454 T13870 T13869 dobj NF-κB,mediate
R10455 T13871 T13870 cc and,NF-κB
R10456 T13872 T13870 conj IRF3,NF-κB
R10457 T13873 T13869 dobj activation,mediate
R10459 T13874 T13873 prep in,activation
R10460 T13875 T13876 amod myeloid,cells
R10461 T13876 T13874 pobj cells,in
R10463 T13877 T13860 punct .,excluded

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T14479 74-81 Positive_regulation denotes mediate
T14478 74-81 Positive_regulation denotes mediate
T14477 97-107 Positive_regulation denotes activation
T14476 97-107 Positive_regulation denotes activation
T14475 92-96 Protein denotes IRF3
T14474 82-87 Protein denotes NF-κB
T14473 35-38 Protein denotes A20
R10894 T14474 T14476 themeOf NF-κB,activation
R10899 T14475 T14477 themeOf IRF3,activation
R10900 T14476 T14478 themeOf activation,mediate
R10902 T14477 T14479 themeOf activation,mediate

testone

Id Subject Object Predicate Lexical cue
T11592 92-96 Protein denotes IRF3