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PMC:3291650 / 29576-29760 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T11683 142-152 Negative_regulation denotes deficiency
T11682 67-71 Protein denotes IKKε
T11681 58-62 Protein denotes TBK1
T11680 40-54 Binding denotes ubiquitination
T11638 67-71 Protein denotes IKKε
T11637 58-62 Protein denotes TBK1
R8477 T11681 T11680 themeOf TBK1,ubiquitination
R8478 T11682 T11680 themeOf IKKε,ubiquitination

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12719 177-183 NN denotes status
T12718 162-176 NN denotes ubiquitination
T12717 156-161 PRP-DOLLAR- denotes their
T12716 153-155 IN denotes on
T12715 142-152 NN denotes deficiency
T12714 138-141 NN denotes A20
T12713 135-137 IN denotes of
T12712 128-134 NN denotes effect
T12711 124-127 DT denotes the
T12710 115-123 VB denotes studying
T12709 110-114 IN denotes from
T12708 107-109 PRP denotes us
T12707 96-106 VB denotes preventing
T12706 94-95 -COMMA- denotes ,
T12705 83-94 NN denotes macrophages
T12704 75-82 JJ denotes primary
T12703 72-74 IN denotes in
T12702 67-71 NN denotes IKKε
T12701 63-66 CC denotes and
T12700 58-62 NN denotes TBK1
T12699 55-57 IN denotes of
T12698 40-54 NN denotes ubiquitination
T12697 33-39 VB denotes detect
T12696 25-32 RB denotes clearly
T12695 22-24 TO denotes to
T12694 15-21 JJ denotes unable
T12693 10-14 VB denotes were
T12692 7-9 PRP denotes we
T12691 3-6 RB denotes far
T12690 0-2 RB denotes So
R9238 T12691 T12690 arg1Of far,So
R9239 T12692 T12693 arg1Of we,were
R9240 T12692 T12694 arg1Of we,unable
R9241 T12692 T12697 arg1Of we,detect
R9242 T12692 T12707 arg1Of we,preventing
R9243 T12693 T12691 arg1Of were,far
R9244 T12694 T12693 arg2Of unable,were
R9245 T12697 T12694 arg2Of detect,unable
R9246 T12697 T12695 arg1Of detect,to
R9247 T12697 T12696 arg1Of detect,clearly
R9248 T12697 T12706 arg1Of detect,","
R9249 T12697 T12707 modOf detect,preventing
R9250 T12698 T12697 arg2Of ubiquitination,detect
R9251 T12698 T12699 arg1Of ubiquitination,of
R9252 T12698 T12703 arg1Of ubiquitination,in
R9253 T12700 T12701 arg1Of TBK1,and
R9254 T12701 T12699 arg2Of and,of
R9255 T12702 T12701 arg2Of IKKε,and
R9256 T12705 T12703 arg2Of macrophages,in
R9257 T12705 T12704 arg1Of macrophages,primary
R9258 T12707 T12709 arg1Of preventing,from
R9259 T12708 T12707 arg2Of us,preventing
R9260 T12710 T12709 arg2Of studying,from
R9261 T12712 T12710 arg2Of effect,studying
R9262 T12712 T12711 arg1Of effect,the
R9263 T12712 T12713 arg1Of effect,of
R9264 T12712 T12716 arg1Of effect,on
R9265 T12715 T12713 arg2Of deficiency,of
R9266 T12715 T12714 arg1Of deficiency,A20
R9267 T12719 T12716 arg2Of status,on
R9268 T12719 T12717 arg1Of status,their
R9269 T12719 T12718 arg1Of status,ubiquitination

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T11814 67-71 Antecedent denotes IKKε
T11813 58-62 Antecedent denotes TBK1
T11812 156-161 Anaphor denotes their
R8527 T11812 T11813 boundBy their,TBK1
R8528 T11812 T11814 boundBy their,IKKε

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11839 67-71 Protein denotes IKKε
T11838 58-62 Protein denotes TBK1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T14295 58-62 http://www.uniprot.org/uniprot/Q9UHD2 denotes TBK1
T14269 138-141 http://www.uniprot.org/uniprot/P21580 denotes A20

GO-BP

Id Subject Object Predicate Lexical cue
T11896 58-62 http://purl.obolibrary.org/obo/GO_0008384 denotes TBK1

GO-MF

Id Subject Object Predicate Lexical cue
T11923 58-62 http://purl.obolibrary.org/obo/GO_0008384 denotes TBK1

sentences

Id Subject Object Predicate Lexical cue
T11725 0-184 Sentence denotes So far we were unable to clearly detect ubiquitination of TBK1 and IKKε in primary macrophages, preventing us from studying the effect of A20 deficiency on their ubiquitination status.
T179 0-184 Sentence denotes So far we were unable to clearly detect ubiquitination of TBK1 and IKKε in primary macrophages, preventing us from studying the effect of A20 deficiency on their ubiquitination status.

simple1

Id Subject Object Predicate Lexical cue
T11993 67-71 Protein denotes IKKε
T11992 58-62 Protein denotes TBK1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14594 40-54 Binding denotes ubiquitination
T14580 67-71 Protein denotes IKKε
T14579 58-62 Protein denotes TBK1
R10923 T14579 T14594 themeOf TBK1,ubiquitination
R10925 T14580 T14594 themeOf IKKε,ubiquitination

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T14334 40-54 Binding denotes ubiquitination
T14320 67-71 Protein denotes IKKε
T14319 58-62 Protein denotes TBK1
R10829 T14319 T14334 themeOf TBK1,ubiquitination
R10831 T14320 T14334 themeOf IKKε,ubiquitination

DLUT931

Id Subject Object Predicate Lexical cue
T14382 40-54 Ubiquitination denotes ubiquitination
T14361 67-71 Protein denotes IKKε
T14360 58-62 Protein denotes TBK1
R10841 T14360 T14382 themeOf TBK1,ubiquitination
R10842 T14361 T14382 themeOf IKKε,ubiquitination

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T14756 22-141 Ubiquitination denotes to clearly detect ubiquitination of TBK1 and IKKε in primary macrophages, preventing us from studying the effect of A20
T14755 22-141 Ubiquitination denotes to clearly detect ubiquitination of TBK1 and IKKε in primary macrophages, preventing us from studying the effect of A20
T14719 58-62 Protein denotes TBK1
T14713 135-141 Protein denotes of A20
T14694 67-71 Protein denotes IKKε
T14639 75-95 Entity denotes primary macrophages,
R10944 T14694 T14756 themeOf IKKε,"to clearly detect ubiquitination of TBK1 and IKKε in primary macrophages, preventing us from studying the effect of A20"
R10959 T14719 T14755 themeOf TBK1,"to clearly detect ubiquitination of TBK1 and IKKε in primary macrophages, preventing us from studying the effect of A20"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T13843 107-109 PRP denotes us
T13842 96-106 VBG denotes preventing
T13841 94-95 , denotes ,
T13840 83-94 NNS denotes macrophages
T13839 75-82 JJ denotes primary
T13838 72-74 IN denotes in
T13837 67-71 NNP denotes IKKε
T13836 63-66 CC denotes and
T13835 58-62 CD denotes TBK1
T13834 55-57 IN denotes of
T13833 40-54 NN denotes ubiquitination
T13832 33-39 VB denotes detect
T13831 25-32 RB denotes clearly
T13830 22-24 TO denotes to
T13829 15-21 JJ denotes unable
T13828 10-14 VBD denotes were
T13827 7-9 PRP denotes we
T13826 3-6 RB denotes far
T13825 0-2 RB denotes So
T13855 183-184 . denotes .
T13854 177-183 NN denotes status
T13853 162-176 NN denotes ubiquitination
T13852 156-161 PRP$ denotes their
T13851 153-155 IN denotes on
T13850 142-152 NN denotes deficiency
T13849 138-141 NNP denotes A20
T13848 135-137 IN denotes of
T13847 128-134 NN denotes effect
T13846 124-127 DT denotes the
T13845 115-123 VBG denotes studying
T13844 110-114 IN denotes from
R10388 T13825 T13826 advmod So,far
R10389 T13826 T13828 advmod far,were
R10390 T13827 T13828 nsubj we,were
R10391 T13828 T13828 ROOT were,were
R10392 T13829 T13828 acomp unable,were
R10393 T13830 T13832 aux to,detect
R10394 T13831 T13832 advmod clearly,detect
R10395 T13832 T13829 xcomp detect,unable
R10396 T13833 T13832 dobj ubiquitination,detect
R10397 T13834 T13833 prep of,ubiquitination
R10398 T13835 T13834 pobj TBK1,of
R10399 T13836 T13835 cc and,TBK1
R10400 T13837 T13833 conj IKKε,ubiquitination
R10401 T13838 T13837 prep in,IKKε
R10402 T13839 T13840 amod primary,macrophages
R10403 T13840 T13838 pobj macrophages,in
R10404 T13841 T13828 punct ",",were
R10405 T13842 T13828 advcl preventing,were
R10406 T13843 T13842 dobj us,preventing
R10407 T13844 T13842 prep from,preventing
R10408 T13845 T13844 pcomp studying,from
R10409 T13846 T13847 det the,effect
R10410 T13847 T13845 dobj effect,studying
R10411 T13848 T13847 prep of,effect
R10412 T13849 T13850 compound A20,deficiency
R10413 T13850 T13848 pobj deficiency,of
R10414 T13851 T13845 prep on,studying
R10415 T13852 T13854 poss their,status
R10416 T13853 T13854 compound ubiquitination,status
R10431 T13854 T13851 pobj status,on
R10433 T13855 T13828 punct .,were

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T14472 142-152 Negative_regulation denotes deficiency
T14471 138-141 Protein denotes A20
T14470 58-71 Protein denotes TBK1 and IKKε
R10891 T14471 T14472 themeOf A20,deficiency

testone

Id Subject Object Predicate Lexical cue
T11610 142-152 Negative_regulation denotes deficiency
T11609 40-54 Negative_regulation denotes ubiquitination
T11591 67-71 Protein denotes IKKε
T11590 58-62 Protein denotes TBK1
R8468 T11590 T11609 themeOf TBK1,ubiquitination
R8469 T11591 T11609 themeOf IKKε,ubiquitination