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PMC:3291650 / 292-550 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T20 171-176 Protein denotes RIG-I
T19 141-170 Protein denotes pathogen recognition receptor
T15 171-176 Protein denotes RIG-I
T14 141-170 Protein denotes pathogen recognition receptor

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T139 247-257 NN denotes interferon
T138 237-246 JJ denotes antiviral
T137 233-236 CC denotes and
T136 223-232 NN denotes cytokines
T135 207-222 JJ denotes proinflammatory
T134 204-206 IN denotes of
T133 193-203 NN denotes production
T132 189-192 DT denotes the
T131 181-188 VB denotes induces
T130 177-180 CC denotes and
T129 171-176 NN denotes RIG-I
T128 162-170 NN denotes receptor
T127 150-161 NN denotes recognition
T126 141-149 NN denotes pathogen
T125 127-140 JJ denotes intracellular
T124 123-126 DT denotes the
T123 113-122 VB denotes activates
T122 107-112 WDT denotes which
T121 105-106 -COMMA- denotes ,
T120 100-105 NN denotes cycle
T119 95-99 NN denotes life
T118 83-94 NN denotes replication
T117 79-82 DT denotes the
T116 72-78 IN denotes during
T115 59-71 NN denotes intermediate
T114 56-58 DT denotes an
T113 53-55 IN denotes as
T112 49-52 NN denotes RNA
T111 33-48 JJ denotes double-stranded
T110 24-32 VB denotes produces
T109 22-23 -RRB- denotes )
T108 19-22 NN denotes IAV
T107 18-19 -LRB- denotes (
T106 12-17 NN denotes virus
T105 10-11 NN denotes A
T104 0-9 NN denotes Influenza
R35 T106 T104 arg1Of virus,Influenza
R36 T106 T105 arg1Of virus,A
R37 T106 T107 arg1Of virus,(
R38 T106 T110 arg1Of virus,produces
R39 T108 T107 arg2Of IAV,(
R40 T109 T107 arg3Of ),(
R41 T110 T113 arg1Of produces,as
R42 T112 T110 arg2Of RNA,produces
R43 T112 T111 arg1Of RNA,double-stranded
R44 T115 T113 arg2Of intermediate,as
R45 T115 T114 arg1Of intermediate,an
R46 T115 T116 arg1Of intermediate,during
R47 T120 T116 arg2Of cycle,during
R48 T120 T117 arg1Of cycle,the
R49 T120 T118 arg1Of cycle,replication
R50 T120 T119 arg1Of cycle,life
R51 T120 T121 arg1Of cycle,","
R52 T120 T122 arg1Of cycle,which
R53 T120 T123 arg1Of cycle,activates
R54 T120 T131 arg1Of cycle,induces
R55 T123 T130 arg1Of activates,and
R56 T129 T123 arg2Of RIG-I,activates
R57 T129 T124 arg1Of RIG-I,the
R58 T129 T125 arg1Of RIG-I,intracellular
R59 T129 T126 arg1Of RIG-I,pathogen
R60 T129 T127 arg1Of RIG-I,recognition
R61 T129 T128 arg1Of RIG-I,receptor
R62 T131 T130 arg2Of induces,and
R63 T133 T131 arg2Of production,induces
R64 T133 T132 arg1Of production,the
R65 T133 T134 arg1Of production,of
R66 T136 T135 arg1Of cytokines,proinflammatory
R67 T136 T137 arg1Of cytokines,and
R68 T137 T134 arg2Of and,of
R69 T139 T137 arg2Of interferon,and
R70 T139 T138 arg1Of interferon,antiviral

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T41 141-170 Protein denotes pathogen recognition receptor
T42 171-176 Protein denotes RIG-I

GO-CC

Id Subject Object Predicate Lexical cue
T61 127-140 http://purl.obolibrary.org/obo/GO_0005622 denotes intracellular

sentences

Id Subject Object Predicate Lexical cue
T26 0-258 Sentence denotes Influenza A virus (IAV) produces double-stranded RNA as an intermediate during the replication life cycle, which activates the intracellular pathogen recognition receptor RIG-I and induces the production of proinflammatory cytokines and antiviral interferon.
T5 0-258 Sentence denotes Influenza A virus (IAV) produces double-stranded RNA as an intermediate during the replication life cycle, which activates the intracellular pathogen recognition receptor RIG-I and induces the production of proinflammatory cytokines and antiviral interferon.

simple1

Id Subject Object Predicate Lexical cue
T67 171-176 Protein denotes RIG-I
T66 141-170 Protein denotes pathogen recognition receptor

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T608 141-170 Protein denotes pathogen recognition receptor
T609 171-176 Protein denotes RIG-I
T612 113-122 Positive_regulation denotes activates
R506 T608 T612 themeOf pathogen recognition receptor,activates
R507 T609 T612 themeOf RIG-I,activates

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T543 141-170 Protein denotes pathogen recognition receptor
T544 171-176 Protein denotes RIG-I
T547 113-122 Positive_regulation denotes activates
R498 T544 T547 themeOf RIG-I,activates

DLUT931

Id Subject Object Predicate Lexical cue
T550 141-170 Protein denotes pathogen recognition receptor
T551 171-176 Protein denotes RIG-I
T554 113-122 Positive_regulation denotes activates
R501 T550 T554 themeOf pathogen recognition receptor,activates
R502 T551 T554 themeOf RIG-I,activates

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T651 189-257 Gene_expression denotes the production of proinflammatory cytokines and antiviral interferon
T650 189-257 Gene_expression denotes the production of proinflammatory cytokines and antiviral interferon
T649 123-177 Localization denotes the intracellular pathogen recognition receptor RIG-I
T642 123-176 Protein denotes the intracellular pathogen recognition receptor RIG-I
T640 56-71 Entity denotes an intermediate
T631 33-52 Protein denotes double-stranded RNA
T615 207-232 Protein denotes proinflammatory cytokines
T623 237-246 Entity denotes antiviral
T628 237-257 Protein denotes antiviral interferon
T634 123-176 Protein denotes the intracellular pathogen recognition receptor RIG-I
T637 127-140 Entity denotes intracellular
R510 T615 T651 themeOf proinflammatory cytokines,the production of proinflammatory cytokines and antiviral interferon
R513 T628 T650 themeOf antiviral interferon,the production of proinflammatory cytokines and antiviral interferon
R515 T634 T649 themeOf the intracellular pathogen recognition receptor RIG-I,the intracellular pathogen recognition receptor RIG-I
R516 T637 T649 locationOf intracellular,the intracellular pathogen recognition receptor RIG-I

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T372 257-258 . denotes .
T371 247-257 NN denotes interferon
T370 237-246 JJ denotes antiviral
T369 233-236 CC denotes and
T368 223-232 NNS denotes cytokines
T367 207-222 JJ denotes proinflammatory
T366 204-206 IN denotes of
T365 193-203 NN denotes production
T364 189-192 DT denotes the
T363 181-188 VBZ denotes induces
T362 177-180 CC denotes and
T361 171-176 NNP denotes RIG-I
T360 162-170 NN denotes receptor
T359 150-161 NN denotes recognition
T358 141-149 NN denotes pathogen
T357 127-140 JJ denotes intracellular
T356 123-126 DT denotes the
T355 113-122 VBZ denotes activates
T354 107-112 WDT denotes which
T353 105-106 , denotes ,
T352 100-105 NN denotes cycle
T351 95-99 NN denotes life
T350 83-94 NN denotes replication
T349 79-82 DT denotes the
T348 72-78 IN denotes during
T347 59-71 JJ denotes intermediate
T346 56-58 DT denotes an
T345 53-55 IN denotes as
T344 49-52 NNP denotes RNA
T343 33-48 JJ denotes double-stranded
T342 24-32 VBZ denotes produces
T341 22-23 -RRB- denotes )
T340 19-22 NNP denotes IAV
T339 18-19 -LRB- denotes (
T338 12-17 NN denotes virus
T337 10-11 NNP denotes A
T336 0-9 NNP denotes Influenza
R256 T336 T342 nsubj Influenza,produces
R257 T337 T338 det A,virus
R258 T338 T336 appos virus,Influenza
R259 T339 T340 punct (,IAV
R260 T340 T338 appos IAV,virus
R261 T341 T338 punct ),virus
R262 T342 T342 ROOT produces,produces
R263 T343 T344 amod double-stranded,RNA
R264 T344 T342 dobj RNA,produces
R265 T345 T342 prep as,produces
R266 T346 T347 det an,intermediate
R267 T347 T345 pobj intermediate,as
R268 T348 T342 prep during,produces
R269 T349 T352 det the,cycle
R270 T350 T352 compound replication,cycle
R271 T351 T352 compound life,cycle
R272 T352 T348 pobj cycle,during
R273 T353 T352 punct ",",cycle
R274 T354 T355 nsubj which,activates
R275 T355 T352 relcl activates,cycle
R276 T356 T359 det the,recognition
R277 T357 T359 amod intracellular,recognition
R278 T358 T359 compound pathogen,recognition
R279 T359 T355 dobj recognition,activates
R280 T360 T361 compound receptor,RIG-I
R281 T361 T359 appos RIG-I,recognition
R282 T362 T355 cc and,activates
R283 T363 T355 conj induces,activates
R284 T364 T365 det the,production
R285 T365 T363 dobj production,induces
R286 T366 T365 prep of,production
R287 T367 T368 amod proinflammatory,cytokines
R288 T368 T366 pobj cytokines,of
R289 T369 T368 cc and,cytokines
R290 T370 T371 amod antiviral,interferon
R291 T371 T368 conj interferon,cytokines
R292 T372 T342 punct .,produces

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T568 181-188 Positive_regulation denotes induces
T567 193-203 Gene_expression denotes production
T566 247-257 Protein denotes interferon
T565 171-176 Protein denotes RIG-I
R457 T566 T567 themeOf interferon,production
R458 T567 T568 themeOf production,induces

testone

Id Subject Object Predicate Lexical cue
T7 171-176 Protein denotes RIG-I
T6 141-170 Protein denotes pathogen recognition receptor