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PMC:3291650 / 29193-29465 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T11678 256-260 Protein denotes IRF3
T11677 220-224 Protein denotes IKKε
T11676 211-215 Protein denotes TBK1
T11675 175-184 Regulation denotes affecting
T11674 119-126 Negative_regulation denotes disrupt
T11673 107-112 Protein denotes ABIN1
T11672 78-85 Binding denotes binding
T11635 256-260 Protein denotes IRF3
T11634 220-224 Protein denotes IKKε
T11633 211-215 Protein denotes TBK1
T11632 107-112 Protein denotes ABIN1
R8476 T11673 T11672 themeOf ABIN1,binding

2_test

Id Subject Object Predicate Lexical cue
22396652-20304918-98461881 262-264 20304918 denotes 81
22396652-21885437-98461882 268-270 21885437 denotes 82

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12629 8-15 NN denotes context
T12628 3-7 DT denotes this
T12627 0-2 IN denotes In
T12673 270-271 -RRB- denotes ]
T12672 268-270 CD denotes 82
T12671 267-268 -LRB- denotes [
T12670 265-266 -COMMA- denotes ,
T12669 264-265 -RRB- denotes ]
T12668 262-264 CD denotes 81
T12667 261-262 -LRB- denotes [
T12666 256-260 NN denotes IRF3
T12665 247-255 NN denotes activity
T12664 244-246 TO denotes to
T12663 236-243 NN denotes ability
T12662 230-235 PRP-DOLLAR- denotes their
T12661 226-229 CC denotes and
T12660 224-225 -COMMA- denotes ,
T12659 220-224 NN denotes IKKε
T12658 216-219 CC denotes and
T12657 211-215 NN denotes TBK1
T12656 208-210 IN denotes of
T12655 185-207 NN denotes K63-polyubiquitination
T12654 175-184 VB denotes affecting
T12653 164-174 RB denotes negatively
T12652 156-163 RB denotes thereby
T12651 154-155 -COMMA- denotes ,
T12650 147-154 NN denotes complex
T12649 131-146 NN denotes TRAF3-TBK1-IKKε
T12648 127-130 DT denotes the
T12647 119-126 VB denotes disrupt
T12646 116-118 TO denotes to
T12645 113-115 TO denotes to
T12644 107-112 NN denotes ABIN1
T12643 103-106 CC denotes and
T12642 95-102 NN denotes TAX1BP1
T12641 86-94 NN denotes proteins
T12640 68-85 JJ denotes ubiquitin-binding
T12639 64-67 DT denotes the
T12638 59-63 IN denotes with
T12637 48-58 VB denotes cooperates
T12636 44-47 NN denotes A20
T12635 39-43 IN denotes that
T12634 33-38 VB denotes shown
T12633 24-32 RB denotes recently
T12632 20-23 VB denotes was
T12631 17-19 PRP denotes it
T12630 15-16 -COMMA- denotes ,
R9174 T12629 T12627 arg2Of context,In
R9175 T12629 T12628 arg1Of context,this
R9176 T12631 T12632 arg1Of it,was
R9177 T12631 T12634 arg2Of it,shown
R9178 T12634 T12627 arg1Of shown,In
R9179 T12634 T12630 arg1Of shown,","
R9180 T12634 T12632 arg2Of shown,was
R9181 T12634 T12633 arg1Of shown,recently
R9182 T12636 T12637 arg1Of A20,cooperates
R9183 T12637 T12634 arg3Of cooperates,shown
R9184 T12637 T12635 arg1Of cooperates,that
R9185 T12637 T12638 arg1Of cooperates,with
R9186 T12637 T12645 arg1Of cooperates,to
R9187 T12637 T12651 arg1Of cooperates,","
R9188 T12637 T12654 modOf cooperates,affecting
R9189 T12641 T12639 arg1Of proteins,the
R9190 T12641 T12640 arg1Of proteins,ubiquitin-binding
R9191 T12642 T12643 arg1Of TAX1BP1,and
R9192 T12643 T12638 arg2Of and,with
R9193 T12643 T12641 arg1Of and,proteins
R9194 T12644 T12643 arg2Of ABIN1,and
R9195 T12647 T12637 arg2Of disrupt,cooperates
R9196 T12647 T12646 arg1Of disrupt,to
R9197 T12650 T12647 arg2Of complex,disrupt
R9198 T12650 T12648 arg1Of complex,the
R9199 T12650 T12649 arg1Of complex,TRAF3-TBK1-IKKε
R9200 T12654 T12652 arg1Of affecting,thereby
R9201 T12654 T12653 arg1Of affecting,negatively
R9202 T12654 T12670 arg1Of affecting,","
R9203 T12654 T12671 arg1Of affecting,[
R9204 T12655 T12654 arg2Of K63-polyubiquitination,affecting
R9205 T12655 T12656 arg1Of K63-polyubiquitination,of
R9206 T12657 T12658 arg1Of TBK1,and
R9207 T12658 T12661 arg1Of and,and
R9208 T12659 T12658 arg2Of IKKε,and
R9209 T12661 T12656 arg2Of and,of
R9210 T12661 T12660 arg1Of and,","
R9211 T12663 T12661 arg2Of ability,and
R9212 T12663 T12662 arg1Of ability,their
R9213 T12663 T12664 arg1Of ability,to
R9214 T12666 T12664 arg2Of IRF3,to
R9215 T12666 T12665 arg1Of IRF3,activity
R9216 T12666 T12667 arg1Of IRF3,[
R9217 T12668 T12667 arg2Of 81,[
R9218 T12669 T12667 arg3Of ],[
R9219 T12672 T12671 arg2Of 82,[
R9220 T12673 T12671 arg3Of ],[

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T11811 220-224 Antecedent denotes IKKε
T11810 211-215 Antecedent denotes TBK1
T11809 230-235 Anaphor denotes their
R8525 T11809 T11810 boundBy their,TBK1
R8526 T11809 T11811 boundBy their,IKKε

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11836 256-260 Protein denotes IRF3
T11835 220-224 Protein denotes IKKε
T11834 211-215 Protein denotes TBK1
T11833 107-112 Protein denotes ABIN1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T14294 211-215 http://www.uniprot.org/uniprot/Q9UHD2 denotes TBK1
T14293 137-141 http://www.uniprot.org/uniprot/Q9UHD2 denotes TBK1
T14292 131-136 http://www.uniprot.org/uniprot/Q13114 denotes TRAF3
T14291 95-102 http://www.uniprot.org/uniprot/Q86VP1 denotes TAX1BP1
T14288 256-260 http://www.uniprot.org/uniprot/Q14653 denotes IRF3
T14268 44-47 http://www.uniprot.org/uniprot/P21580 denotes A20

GO-BP

Id Subject Object Predicate Lexical cue
T11895 211-215 http://purl.obolibrary.org/obo/GO_0008384 denotes TBK1
T11894 137-141 http://purl.obolibrary.org/obo/GO_0008384 denotes TBK1

GO-MF

Id Subject Object Predicate Lexical cue
T11922 211-215 http://purl.obolibrary.org/obo/GO_0008384 denotes TBK1
T11921 137-141 http://purl.obolibrary.org/obo/GO_0008384 denotes TBK1
T11920 78-94 http://purl.obolibrary.org/obo/GO_0005515 denotes binding proteins
T11919 78-85 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T11918 68-94 http://purl.obolibrary.org/obo/GO_0032182 denotes ubiquitin-binding proteins
T11917 68-94 http://purl.obolibrary.org/obo/GO_0031625 denotes ubiquitin-binding proteins
T11916 68-85 http://purl.obolibrary.org/obo/GO_0043130 denotes ubiquitin-binding
T11915 68-77 http://purl.obolibrary.org/obo/GO_0031386 denotes ubiquitin

sentences

Id Subject Object Predicate Lexical cue
T11723 0-272 Sentence denotes In this context, it was recently shown that A20 cooperates with the ubiquitin-binding proteins TAX1BP1 and ABIN1 to to disrupt the TRAF3-TBK1-IKKε complex, thereby negatively affecting K63-polyubiquitination of TBK1 and IKKε, and their ability to activity IRF3 [81], [82].
T177 0-272 Sentence denotes In this context, it was recently shown that A20 cooperates with the ubiquitin-binding proteins TAX1BP1 and ABIN1 to to disrupt the TRAF3-TBK1-IKKε complex, thereby negatively affecting K63-polyubiquitination of TBK1 and IKKε, and their ability to activity IRF3 [81], [82].

simple1

Id Subject Object Predicate Lexical cue
T11990 256-260 Protein denotes IRF3
T11989 220-224 Protein denotes IKKε
T11988 211-215 Protein denotes TBK1
T11987 107-112 Protein denotes ABIN1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14577 256-260 Protein denotes IRF3
T14576 220-224 Protein denotes IKKε
T14575 211-215 Protein denotes TBK1
T14574 107-112 Protein denotes ABIN1

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T14317 256-260 Protein denotes IRF3
T14316 220-224 Protein denotes IKKε
T14315 211-215 Protein denotes TBK1
T14314 107-112 Protein denotes ABIN1

DLUT931

Id Subject Object Predicate Lexical cue
T14377 175-184 Positive_regulation denotes affecting
T14376 185-207 Positive_regulation denotes K63-polyubiquitination
T14375 68-85 Binding denotes ubiquitin-binding
T14358 256-260 Protein denotes IRF3
T14357 220-224 Protein denotes IKKε
T14356 211-215 Protein denotes TBK1
T14355 107-112 Protein denotes ABIN1
R10837 T14355 T14375 themeOf ABIN1,ubiquitin-binding
R10838 T14356 T14376 themeOf TBK1,K63-polyubiquitination
R10839 T14357 T14376 themeOf IKKε,K63-polyubiquitination
R10854 T14376 T14377 themeOf K63-polyubiquitination,affecting
R10855 T14376 T14377 themeOf K63-polyubiquitination,affecting

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T14757 78-94 Binding denotes binding proteins
T14754 156-224 Regulation denotes thereby negatively affecting K63-polyubiquitination of TBK1 and IKKε
T14753 156-224 Regulation denotes thereby negatively affecting K63-polyubiquitination of TBK1 and IKKε
T14750 185-224 Ubiquitination denotes K63-polyubiquitination of TBK1 and IKKε
T14749 185-224 Ubiquitination denotes K63-polyubiquitination of TBK1 and IKKε
T14748 119-146 Negative_regulation denotes disrupt the TRAF3-TBK1-IKKε
T14747 119-146 Negative_regulation denotes disrupt the TRAF3-TBK1-IKKε
T14746 119-146 Negative_regulation denotes disrupt the TRAF3-TBK1-IKKε
T14739 107-154 Binding denotes ABIN1 to to disrupt the TRAF3-TBK1-IKKε complex
T14725 131-136 Protein denotes TRAF3
T14716 68-94 Protein denotes ubiquitin-binding proteins
T14711 64-102 Protein denotes the ubiquitin-binding proteins TAX1BP1
T14710 44-47 Protein denotes A20
T14708 68-94 Protein denotes ubiquitin-binding proteins
T14702 137-141 Protein denotes TBK1
T14701 185-188 Entity denotes K63
T14682 78-94 Protein denotes binding proteins
T14673 107-154 Protein denotes ABIN1 to to disrupt the TRAF3-TBK1-IKKε complex
T14666 131-146 Protein denotes TRAF3-TBK1-IKKε
T14658 256-265 Protein denotes IRF3 [81]
T14645 220-224 Protein denotes IKKε
T14598 211-215 Protein denotes TBK1
R10921 T14598 T14750 themeOf TBK1,K63-polyubiquitination of TBK1 and IKKε
R10936 T14645 T14749 themeOf IKKε,K63-polyubiquitination of TBK1 and IKKε
R10938 T14666 T14748 themeOf TRAF3-TBK1-IKKε,disrupt the TRAF3-TBK1-IKKε
R10939 T14673 T14739 themeOf ABIN1 to to disrupt the TRAF3-TBK1-IKKε complex,ABIN1 to to disrupt the TRAF3-TBK1-IKKε complex
R10940 T14749 T14753 themeOf K63-polyubiquitination of TBK1 and IKKε,thereby negatively affecting K63-polyubiquitination of TBK1 and IKKε
R10941 T14750 T14754 themeOf K63-polyubiquitination of TBK1 and IKKε,thereby negatively affecting K63-polyubiquitination of TBK1 and IKKε
R10943 T14682 T14757 themeOf binding proteins,binding proteins
R10949 T14701 T14598 partOf K63,TBK1
R10950 T14701 T14645 partOf K63,IKKε
R10951 T14701 T14749 siteOf K63,K63-polyubiquitination of TBK1 and IKKε
R10952 T14701 T14750 siteOf K63,K63-polyubiquitination of TBK1 and IKKε
R10953 T14702 T14746 themeOf TBK1,disrupt the TRAF3-TBK1-IKKε
R10960 T14725 T14747 themeOf TRAF3,disrupt the TRAF3-TBK1-IKKε

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T13807 271-272 . denotes .
T13806 270-271 NNP denotes ]
T13805 268-270 CD denotes 82
T13804 267-268 NNP denotes [
T13803 265-266 , denotes ,
T13802 264-265 NNP denotes ]
T13801 262-264 CD denotes 81
T13800 261-262 NNP denotes [
T13799 256-260 CD denotes IRF3
T13798 247-255 NN denotes activity
T13797 244-246 TO denotes to
T13796 236-243 NN denotes ability
T13795 230-235 PRP$ denotes their
T13794 226-229 CC denotes and
T13793 224-225 , denotes ,
T13792 220-224 NNP denotes IKKε
T13791 216-219 CC denotes and
T13790 211-215 CD denotes TBK1
T13789 208-210 IN denotes of
T13788 185-207 NN denotes K63-polyubiquitination
T13787 175-184 VBG denotes affecting
T13786 164-174 RB denotes negatively
T13785 156-163 RB denotes thereby
T13784 154-155 , denotes ,
T13783 147-154 NN denotes complex
T13782 131-146 NN denotes TRAF3-TBK1-IKKε
T13781 127-130 DT denotes the
T13780 119-126 VB denotes disrupt
T13779 116-118 TO denotes to
T13778 113-115 TO denotes to
T13777 107-112 CD denotes ABIN1
T13776 103-106 CC denotes and
T13775 95-102 CD denotes TAX1BP1
T13774 86-94 NNS denotes proteins
T13773 68-85 JJ denotes ubiquitin-binding
T13772 64-67 DT denotes the
T13771 59-63 IN denotes with
T13770 48-58 NNS denotes cooperates
T13769 44-47 CD denotes A20
T13768 39-43 IN denotes that
T13767 33-38 VBN denotes shown
T13766 24-32 RB denotes recently
T13765 20-23 VBD denotes was
T13764 17-19 PRP denotes it
T13763 15-16 , denotes ,
T13762 8-15 NN denotes context
T13761 3-7 DT denotes this
T13760 0-2 IN denotes In
R10323 T13760 T13767 prep In,shown
R10324 T13761 T13762 det this,context
R10325 T13762 T13760 pobj context,In
R10326 T13763 T13767 punct ",",shown
R10327 T13764 T13767 nsubjpass it,shown
R10328 T13765 T13767 auxpass was,shown
R10329 T13766 T13767 advmod recently,shown
R10330 T13767 T13767 ROOT shown,shown
R10331 T13768 T13767 dobj that,shown
R10332 T13769 T13770 nummod A20,cooperates
R10333 T13770 T13768 advmod cooperates,that
R10334 T13771 T13770 prep with,cooperates
R10335 T13772 T13774 det the,proteins
R10336 T13773 T13774 amod ubiquitin-binding,proteins
R10337 T13774 T13771 pobj proteins,with
R10338 T13775 T13774 appos TAX1BP1,proteins
R10339 T13776 T13775 cc and,TAX1BP1
R10340 T13777 T13775 conj ABIN1,TAX1BP1
R10341 T13778 T13780 aux to,disrupt
R10342 T13779 T13780 aux to,disrupt
R10343 T13780 T13770 xcomp disrupt,cooperates
R10344 T13781 T13783 det the,complex
R10345 T13782 T13783 compound TRAF3-TBK1-IKKε,complex
R10346 T13783 T13780 dobj complex,disrupt
R10347 T13784 T13770 punct ",",cooperates
R10348 T13785 T13787 advmod thereby,affecting
R10349 T13786 T13787 advmod negatively,affecting
R10350 T13787 T13770 conj affecting,cooperates
R10351 T13788 T13787 dobj K63-polyubiquitination,affecting
R10352 T13789 T13788 prep of,K63-polyubiquitination
R10353 T13790 T13789 pobj TBK1,of
R10354 T13791 T13790 cc and,TBK1
R10355 T13792 T13790 conj IKKε,TBK1
R10356 T13793 T13792 punct ",",IKKε
R10357 T13794 T13792 cc and,IKKε
R10358 T13795 T13796 poss their,ability
R10359 T13796 T13787 dobj ability,affecting
R10360 T13797 T13798 aux to,activity
R10361 T13798 T13787 advcl activity,affecting
R10362 T13799 T13802 nummod IRF3,]
R10363 T13800 T13802 nmod [,]
R10364 T13801 T13802 nummod 81,]
R10365 T13802 T13798 dobj ],activity
R10366 T13803 T13802 punct ",",]
R10367 T13804 T13802 conj [,]
R10368 T13805 T13806 nummod 82,]
R10369 T13806 T13802 conj ],]
R10370 T13807 T13767 punct .,shown

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T14467 78-85 Binding denotes binding
T14466 211-215 Protein denotes TBK1
T14465 137-141 Protein denotes TBK1
T14464 131-136 Protein denotes TRAF3
T14463 107-112 Protein denotes ABIN1
T14462 95-102 Protein denotes TAX1BP1
T14461 68-77 Protein denotes ubiquitin
R10887 T14461 T14467 themeOf ubiquitin,binding
R10888 T14463 T14467 themeOf ABIN1,binding

testone

Id Subject Object Predicate Lexical cue
T11608 175-184 Regulation denotes affecting
T11607 164-174 Negative_regulation denotes negatively
T11606 119-126 Negative_regulation denotes disrupt
T11588 256-260 Protein denotes IRF3
T11587 220-224 Protein denotes IKKε
T11586 211-215 Protein denotes TBK1
T11585 107-112 Protein denotes ABIN1