
PMC:3291650 / 29193-29465
Annnotations
test3
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11678 | 256-260 | Protein | denotes | IRF3 |
T11677 | 220-224 | Protein | denotes | IKKε |
T11676 | 211-215 | Protein | denotes | TBK1 |
T11675 | 175-184 | Regulation | denotes | affecting |
T11674 | 119-126 | Negative_regulation | denotes | disrupt |
T11673 | 107-112 | Protein | denotes | ABIN1 |
T11672 | 78-85 | Binding | denotes | binding |
T11635 | 256-260 | Protein | denotes | IRF3 |
T11634 | 220-224 | Protein | denotes | IKKε |
T11633 | 211-215 | Protein | denotes | TBK1 |
T11632 | 107-112 | Protein | denotes | ABIN1 |
R8476 | T11673 | T11672 | themeOf | ABIN1,binding |
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
22396652-20304918-98461881 | 262-264 | 20304918 | denotes | 81 |
22396652-21885437-98461882 | 268-270 | 21885437 | denotes | 82 |
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12629 | 8-15 | NN | denotes | context |
T12628 | 3-7 | DT | denotes | this |
T12627 | 0-2 | IN | denotes | In |
T12673 | 270-271 | -RRB- | denotes | ] |
T12672 | 268-270 | CD | denotes | 82 |
T12671 | 267-268 | -LRB- | denotes | [ |
T12670 | 265-266 | -COMMA- | denotes | , |
T12669 | 264-265 | -RRB- | denotes | ] |
T12668 | 262-264 | CD | denotes | 81 |
T12667 | 261-262 | -LRB- | denotes | [ |
T12666 | 256-260 | NN | denotes | IRF3 |
T12665 | 247-255 | NN | denotes | activity |
T12664 | 244-246 | TO | denotes | to |
T12663 | 236-243 | NN | denotes | ability |
T12662 | 230-235 | PRP-DOLLAR- | denotes | their |
T12661 | 226-229 | CC | denotes | and |
T12660 | 224-225 | -COMMA- | denotes | , |
T12659 | 220-224 | NN | denotes | IKKε |
T12658 | 216-219 | CC | denotes | and |
T12657 | 211-215 | NN | denotes | TBK1 |
T12656 | 208-210 | IN | denotes | of |
T12655 | 185-207 | NN | denotes | K63-polyubiquitination |
T12654 | 175-184 | VB | denotes | affecting |
T12653 | 164-174 | RB | denotes | negatively |
T12652 | 156-163 | RB | denotes | thereby |
T12651 | 154-155 | -COMMA- | denotes | , |
T12650 | 147-154 | NN | denotes | complex |
T12649 | 131-146 | NN | denotes | TRAF3-TBK1-IKKε |
T12648 | 127-130 | DT | denotes | the |
T12647 | 119-126 | VB | denotes | disrupt |
T12646 | 116-118 | TO | denotes | to |
T12645 | 113-115 | TO | denotes | to |
T12644 | 107-112 | NN | denotes | ABIN1 |
T12643 | 103-106 | CC | denotes | and |
T12642 | 95-102 | NN | denotes | TAX1BP1 |
T12641 | 86-94 | NN | denotes | proteins |
T12640 | 68-85 | JJ | denotes | ubiquitin-binding |
T12639 | 64-67 | DT | denotes | the |
T12638 | 59-63 | IN | denotes | with |
T12637 | 48-58 | VB | denotes | cooperates |
T12636 | 44-47 | NN | denotes | A20 |
T12635 | 39-43 | IN | denotes | that |
T12634 | 33-38 | VB | denotes | shown |
T12633 | 24-32 | RB | denotes | recently |
T12632 | 20-23 | VB | denotes | was |
T12631 | 17-19 | PRP | denotes | it |
T12630 | 15-16 | -COMMA- | denotes | , |
R9174 | T12629 | T12627 | arg2Of | context,In |
R9175 | T12629 | T12628 | arg1Of | context,this |
R9176 | T12631 | T12632 | arg1Of | it,was |
R9177 | T12631 | T12634 | arg2Of | it,shown |
R9178 | T12634 | T12627 | arg1Of | shown,In |
R9179 | T12634 | T12630 | arg1Of | shown,"," |
R9180 | T12634 | T12632 | arg2Of | shown,was |
R9181 | T12634 | T12633 | arg1Of | shown,recently |
R9182 | T12636 | T12637 | arg1Of | A20,cooperates |
R9183 | T12637 | T12634 | arg3Of | cooperates,shown |
R9184 | T12637 | T12635 | arg1Of | cooperates,that |
R9185 | T12637 | T12638 | arg1Of | cooperates,with |
R9186 | T12637 | T12645 | arg1Of | cooperates,to |
R9187 | T12637 | T12651 | arg1Of | cooperates,"," |
R9188 | T12637 | T12654 | modOf | cooperates,affecting |
R9189 | T12641 | T12639 | arg1Of | proteins,the |
R9190 | T12641 | T12640 | arg1Of | proteins,ubiquitin-binding |
R9191 | T12642 | T12643 | arg1Of | TAX1BP1,and |
R9192 | T12643 | T12638 | arg2Of | and,with |
R9193 | T12643 | T12641 | arg1Of | and,proteins |
R9194 | T12644 | T12643 | arg2Of | ABIN1,and |
R9195 | T12647 | T12637 | arg2Of | disrupt,cooperates |
R9196 | T12647 | T12646 | arg1Of | disrupt,to |
R9197 | T12650 | T12647 | arg2Of | complex,disrupt |
R9198 | T12650 | T12648 | arg1Of | complex,the |
R9199 | T12650 | T12649 | arg1Of | complex,TRAF3-TBK1-IKKε |
R9200 | T12654 | T12652 | arg1Of | affecting,thereby |
R9201 | T12654 | T12653 | arg1Of | affecting,negatively |
R9202 | T12654 | T12670 | arg1Of | affecting,"," |
R9203 | T12654 | T12671 | arg1Of | affecting,[ |
R9204 | T12655 | T12654 | arg2Of | K63-polyubiquitination,affecting |
R9205 | T12655 | T12656 | arg1Of | K63-polyubiquitination,of |
R9206 | T12657 | T12658 | arg1Of | TBK1,and |
R9207 | T12658 | T12661 | arg1Of | and,and |
R9208 | T12659 | T12658 | arg2Of | IKKε,and |
R9209 | T12661 | T12656 | arg2Of | and,of |
R9210 | T12661 | T12660 | arg1Of | and,"," |
R9211 | T12663 | T12661 | arg2Of | ability,and |
R9212 | T12663 | T12662 | arg1Of | ability,their |
R9213 | T12663 | T12664 | arg1Of | ability,to |
R9214 | T12666 | T12664 | arg2Of | IRF3,to |
R9215 | T12666 | T12665 | arg1Of | IRF3,activity |
R9216 | T12666 | T12667 | arg1Of | IRF3,[ |
R9217 | T12668 | T12667 | arg2Of | 81,[ |
R9218 | T12669 | T12667 | arg3Of | ],[ |
R9219 | T12672 | T12671 | arg2Of | 82,[ |
R9220 | T12673 | T12671 | arg3Of | ],[ |
bionlp-st-ge-2016-coref
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11811 | 220-224 | Antecedent | denotes | IKKε |
T11810 | 211-215 | Antecedent | denotes | TBK1 |
T11809 | 230-235 | Anaphor | denotes | their |
R8525 | T11809 | T11810 | boundBy | their,TBK1 |
R8526 | T11809 | T11811 | boundBy | their,IKKε |
bionlp-st-ge-2016-test-proteins
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11836 | 256-260 | Protein | denotes | IRF3 |
T11835 | 220-224 | Protein | denotes | IKKε |
T11834 | 211-215 | Protein | denotes | TBK1 |
T11833 | 107-112 | Protein | denotes | ABIN1 |
bionlp-st-ge-2016-uniprot
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T14294 | 211-215 | http://www.uniprot.org/uniprot/Q9UHD2 | denotes | TBK1 |
T14293 | 137-141 | http://www.uniprot.org/uniprot/Q9UHD2 | denotes | TBK1 |
T14292 | 131-136 | http://www.uniprot.org/uniprot/Q13114 | denotes | TRAF3 |
T14291 | 95-102 | http://www.uniprot.org/uniprot/Q86VP1 | denotes | TAX1BP1 |
T14288 | 256-260 | http://www.uniprot.org/uniprot/Q14653 | denotes | IRF3 |
T14268 | 44-47 | http://www.uniprot.org/uniprot/P21580 | denotes | A20 |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11895 | 211-215 | http://purl.obolibrary.org/obo/GO_0008384 | denotes | TBK1 |
T11894 | 137-141 | http://purl.obolibrary.org/obo/GO_0008384 | denotes | TBK1 |
GO-MF
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11922 | 211-215 | http://purl.obolibrary.org/obo/GO_0008384 | denotes | TBK1 |
T11921 | 137-141 | http://purl.obolibrary.org/obo/GO_0008384 | denotes | TBK1 |
T11920 | 78-94 | http://purl.obolibrary.org/obo/GO_0005515 | denotes | binding proteins |
T11919 | 78-85 | http://purl.obolibrary.org/obo/GO_0005488 | denotes | binding |
T11918 | 68-94 | http://purl.obolibrary.org/obo/GO_0032182 | denotes | ubiquitin-binding proteins |
T11917 | 68-94 | http://purl.obolibrary.org/obo/GO_0031625 | denotes | ubiquitin-binding proteins |
T11916 | 68-85 | http://purl.obolibrary.org/obo/GO_0043130 | denotes | ubiquitin-binding |
T11915 | 68-77 | http://purl.obolibrary.org/obo/GO_0031386 | denotes | ubiquitin |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11723 | 0-272 | Sentence | denotes | In this context, it was recently shown that A20 cooperates with the ubiquitin-binding proteins TAX1BP1 and ABIN1 to to disrupt the TRAF3-TBK1-IKKε complex, thereby negatively affecting K63-polyubiquitination of TBK1 and IKKε, and their ability to activity IRF3 [81], [82]. |
T177 | 0-272 | Sentence | denotes | In this context, it was recently shown that A20 cooperates with the ubiquitin-binding proteins TAX1BP1 and ABIN1 to to disrupt the TRAF3-TBK1-IKKε complex, thereby negatively affecting K63-polyubiquitination of TBK1 and IKKε, and their ability to activity IRF3 [81], [82]. |
simple1
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11990 | 256-260 | Protein | denotes | IRF3 |
T11989 | 220-224 | Protein | denotes | IKKε |
T11988 | 211-215 | Protein | denotes | TBK1 |
T11987 | 107-112 | Protein | denotes | ABIN1 |
BioNLP16_DUT
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T14577 | 256-260 | Protein | denotes | IRF3 |
T14576 | 220-224 | Protein | denotes | IKKε |
T14575 | 211-215 | Protein | denotes | TBK1 |
T14574 | 107-112 | Protein | denotes | ABIN1 |
BioNLP16_Messiy
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T14317 | 256-260 | Protein | denotes | IRF3 |
T14316 | 220-224 | Protein | denotes | IKKε |
T14315 | 211-215 | Protein | denotes | TBK1 |
T14314 | 107-112 | Protein | denotes | ABIN1 |
DLUT931
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T14377 | 175-184 | Positive_regulation | denotes | affecting |
T14376 | 185-207 | Positive_regulation | denotes | K63-polyubiquitination |
T14375 | 68-85 | Binding | denotes | ubiquitin-binding |
T14358 | 256-260 | Protein | denotes | IRF3 |
T14357 | 220-224 | Protein | denotes | IKKε |
T14356 | 211-215 | Protein | denotes | TBK1 |
T14355 | 107-112 | Protein | denotes | ABIN1 |
R10837 | T14355 | T14375 | themeOf | ABIN1,ubiquitin-binding |
R10838 | T14356 | T14376 | themeOf | TBK1,K63-polyubiquitination |
R10839 | T14357 | T14376 | themeOf | IKKε,K63-polyubiquitination |
R10854 | T14376 | T14377 | themeOf | K63-polyubiquitination,affecting |
R10855 | T14376 | T14377 | themeOf | K63-polyubiquitination,affecting |
bionlp-st-ge-2016-test-ihmc
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T14757 | 78-94 | Binding | denotes | binding proteins |
T14754 | 156-224 | Regulation | denotes | thereby negatively affecting K63-polyubiquitination of TBK1 and IKKε |
T14753 | 156-224 | Regulation | denotes | thereby negatively affecting K63-polyubiquitination of TBK1 and IKKε |
T14750 | 185-224 | Ubiquitination | denotes | K63-polyubiquitination of TBK1 and IKKε |
T14749 | 185-224 | Ubiquitination | denotes | K63-polyubiquitination of TBK1 and IKKε |
T14748 | 119-146 | Negative_regulation | denotes | disrupt the TRAF3-TBK1-IKKε |
T14747 | 119-146 | Negative_regulation | denotes | disrupt the TRAF3-TBK1-IKKε |
T14746 | 119-146 | Negative_regulation | denotes | disrupt the TRAF3-TBK1-IKKε |
T14739 | 107-154 | Binding | denotes | ABIN1 to to disrupt the TRAF3-TBK1-IKKε complex |
T14725 | 131-136 | Protein | denotes | TRAF3 |
T14716 | 68-94 | Protein | denotes | ubiquitin-binding proteins |
T14711 | 64-102 | Protein | denotes | the ubiquitin-binding proteins TAX1BP1 |
T14710 | 44-47 | Protein | denotes | A20 |
T14708 | 68-94 | Protein | denotes | ubiquitin-binding proteins |
T14702 | 137-141 | Protein | denotes | TBK1 |
T14701 | 185-188 | Entity | denotes | K63 |
T14682 | 78-94 | Protein | denotes | binding proteins |
T14673 | 107-154 | Protein | denotes | ABIN1 to to disrupt the TRAF3-TBK1-IKKε complex |
T14666 | 131-146 | Protein | denotes | TRAF3-TBK1-IKKε |
T14658 | 256-265 | Protein | denotes | IRF3 [81] |
T14645 | 220-224 | Protein | denotes | IKKε |
T14598 | 211-215 | Protein | denotes | TBK1 |
R10921 | T14598 | T14750 | themeOf | TBK1,K63-polyubiquitination of TBK1 and IKKε |
R10936 | T14645 | T14749 | themeOf | IKKε,K63-polyubiquitination of TBK1 and IKKε |
R10938 | T14666 | T14748 | themeOf | TRAF3-TBK1-IKKε,disrupt the TRAF3-TBK1-IKKε |
R10939 | T14673 | T14739 | themeOf | ABIN1 to to disrupt the TRAF3-TBK1-IKKε complex,ABIN1 to to disrupt the TRAF3-TBK1-IKKε complex |
R10940 | T14749 | T14753 | themeOf | K63-polyubiquitination of TBK1 and IKKε,thereby negatively affecting K63-polyubiquitination of TBK1 and IKKε |
R10941 | T14750 | T14754 | themeOf | K63-polyubiquitination of TBK1 and IKKε,thereby negatively affecting K63-polyubiquitination of TBK1 and IKKε |
R10943 | T14682 | T14757 | themeOf | binding proteins,binding proteins |
R10949 | T14701 | T14598 | partOf | K63,TBK1 |
R10950 | T14701 | T14645 | partOf | K63,IKKε |
R10951 | T14701 | T14749 | siteOf | K63,K63-polyubiquitination of TBK1 and IKKε |
R10952 | T14701 | T14750 | siteOf | K63,K63-polyubiquitination of TBK1 and IKKε |
R10953 | T14702 | T14746 | themeOf | TBK1,disrupt the TRAF3-TBK1-IKKε |
R10960 | T14725 | T14747 | themeOf | TRAF3,disrupt the TRAF3-TBK1-IKKε |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T13807 | 271-272 | . | denotes | . |
T13806 | 270-271 | NNP | denotes | ] |
T13805 | 268-270 | CD | denotes | 82 |
T13804 | 267-268 | NNP | denotes | [ |
T13803 | 265-266 | , | denotes | , |
T13802 | 264-265 | NNP | denotes | ] |
T13801 | 262-264 | CD | denotes | 81 |
T13800 | 261-262 | NNP | denotes | [ |
T13799 | 256-260 | CD | denotes | IRF3 |
T13798 | 247-255 | NN | denotes | activity |
T13797 | 244-246 | TO | denotes | to |
T13796 | 236-243 | NN | denotes | ability |
T13795 | 230-235 | PRP$ | denotes | their |
T13794 | 226-229 | CC | denotes | and |
T13793 | 224-225 | , | denotes | , |
T13792 | 220-224 | NNP | denotes | IKKε |
T13791 | 216-219 | CC | denotes | and |
T13790 | 211-215 | CD | denotes | TBK1 |
T13789 | 208-210 | IN | denotes | of |
T13788 | 185-207 | NN | denotes | K63-polyubiquitination |
T13787 | 175-184 | VBG | denotes | affecting |
T13786 | 164-174 | RB | denotes | negatively |
T13785 | 156-163 | RB | denotes | thereby |
T13784 | 154-155 | , | denotes | , |
T13783 | 147-154 | NN | denotes | complex |
T13782 | 131-146 | NN | denotes | TRAF3-TBK1-IKKε |
T13781 | 127-130 | DT | denotes | the |
T13780 | 119-126 | VB | denotes | disrupt |
T13779 | 116-118 | TO | denotes | to |
T13778 | 113-115 | TO | denotes | to |
T13777 | 107-112 | CD | denotes | ABIN1 |
T13776 | 103-106 | CC | denotes | and |
T13775 | 95-102 | CD | denotes | TAX1BP1 |
T13774 | 86-94 | NNS | denotes | proteins |
T13773 | 68-85 | JJ | denotes | ubiquitin-binding |
T13772 | 64-67 | DT | denotes | the |
T13771 | 59-63 | IN | denotes | with |
T13770 | 48-58 | NNS | denotes | cooperates |
T13769 | 44-47 | CD | denotes | A20 |
T13768 | 39-43 | IN | denotes | that |
T13767 | 33-38 | VBN | denotes | shown |
T13766 | 24-32 | RB | denotes | recently |
T13765 | 20-23 | VBD | denotes | was |
T13764 | 17-19 | PRP | denotes | it |
T13763 | 15-16 | , | denotes | , |
T13762 | 8-15 | NN | denotes | context |
T13761 | 3-7 | DT | denotes | this |
T13760 | 0-2 | IN | denotes | In |
R10323 | T13760 | T13767 | prep | In,shown |
R10324 | T13761 | T13762 | det | this,context |
R10325 | T13762 | T13760 | pobj | context,In |
R10326 | T13763 | T13767 | punct | ",",shown |
R10327 | T13764 | T13767 | nsubjpass | it,shown |
R10328 | T13765 | T13767 | auxpass | was,shown |
R10329 | T13766 | T13767 | advmod | recently,shown |
R10330 | T13767 | T13767 | ROOT | shown,shown |
R10331 | T13768 | T13767 | dobj | that,shown |
R10332 | T13769 | T13770 | nummod | A20,cooperates |
R10333 | T13770 | T13768 | advmod | cooperates,that |
R10334 | T13771 | T13770 | prep | with,cooperates |
R10335 | T13772 | T13774 | det | the,proteins |
R10336 | T13773 | T13774 | amod | ubiquitin-binding,proteins |
R10337 | T13774 | T13771 | pobj | proteins,with |
R10338 | T13775 | T13774 | appos | TAX1BP1,proteins |
R10339 | T13776 | T13775 | cc | and,TAX1BP1 |
R10340 | T13777 | T13775 | conj | ABIN1,TAX1BP1 |
R10341 | T13778 | T13780 | aux | to,disrupt |
R10342 | T13779 | T13780 | aux | to,disrupt |
R10343 | T13780 | T13770 | xcomp | disrupt,cooperates |
R10344 | T13781 | T13783 | det | the,complex |
R10345 | T13782 | T13783 | compound | TRAF3-TBK1-IKKε,complex |
R10346 | T13783 | T13780 | dobj | complex,disrupt |
R10347 | T13784 | T13770 | punct | ",",cooperates |
R10348 | T13785 | T13787 | advmod | thereby,affecting |
R10349 | T13786 | T13787 | advmod | negatively,affecting |
R10350 | T13787 | T13770 | conj | affecting,cooperates |
R10351 | T13788 | T13787 | dobj | K63-polyubiquitination,affecting |
R10352 | T13789 | T13788 | prep | of,K63-polyubiquitination |
R10353 | T13790 | T13789 | pobj | TBK1,of |
R10354 | T13791 | T13790 | cc | and,TBK1 |
R10355 | T13792 | T13790 | conj | IKKε,TBK1 |
R10356 | T13793 | T13792 | punct | ",",IKKε |
R10357 | T13794 | T13792 | cc | and,IKKε |
R10358 | T13795 | T13796 | poss | their,ability |
R10359 | T13796 | T13787 | dobj | ability,affecting |
R10360 | T13797 | T13798 | aux | to,activity |
R10361 | T13798 | T13787 | advcl | activity,affecting |
R10362 | T13799 | T13802 | nummod | IRF3,] |
R10363 | T13800 | T13802 | nmod | [,] |
R10364 | T13801 | T13802 | nummod | 81,] |
R10365 | T13802 | T13798 | dobj | ],activity |
R10366 | T13803 | T13802 | punct | ",",] |
R10367 | T13804 | T13802 | conj | [,] |
R10368 | T13805 | T13806 | nummod | 82,] |
R10369 | T13806 | T13802 | conj | ],] |
R10370 | T13807 | T13767 | punct | .,shown |
bionlp-st-ge-2016-test-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T14467 | 78-85 | Binding | denotes | binding |
T14466 | 211-215 | Protein | denotes | TBK1 |
T14465 | 137-141 | Protein | denotes | TBK1 |
T14464 | 131-136 | Protein | denotes | TRAF3 |
T14463 | 107-112 | Protein | denotes | ABIN1 |
T14462 | 95-102 | Protein | denotes | TAX1BP1 |
T14461 | 68-77 | Protein | denotes | ubiquitin |
R10887 | T14461 | T14467 | themeOf | ubiquitin,binding |
R10888 | T14463 | T14467 | themeOf | ABIN1,binding |
testone
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11608 | 175-184 | Regulation | denotes | affecting |
T11607 | 164-174 | Negative_regulation | denotes | negatively |
T11606 | 119-126 | Negative_regulation | denotes | disrupt |
T11588 | 256-260 | Protein | denotes | IRF3 |
T11587 | 220-224 | Protein | denotes | IKKε |
T11586 | 211-215 | Protein | denotes | TBK1 |
T11585 | 107-112 | Protein | denotes | ABIN1 |