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PMC:3291650 / 28302-28447 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T11661 90-95 Protein denotes RIG-I
T11660 64-74 Positive_regulation denotes activation
T11659 59-63 Protein denotes IRF3
T11658 40-48 Positive_regulation denotes enhanced
T11657 17-26 Negative_regulation denotes deficient
T11622 90-95 Protein denotes RIG-I
T11621 59-63 Protein denotes IRF3
R8472 T11657 T11658 causeOf deficient,enhanced
R8473 T11659 T11660 themeOf IRF3,activation
R8474 T11660 T11658 themeOf activation,enhanced

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12500 141-144 NN denotes RNA
T12499 132-140 JJ denotes stranded
T12498 125-131 JJ denotes double
T12497 121-124 NN denotes LMW
T12496 111-120 JJ denotes synthetic
T12495 108-110 IN denotes by
T12494 96-107 NN denotes stimulation
T12493 90-95 NN denotes RIG-I
T12492 87-89 TO denotes to
T12491 78-86 NN denotes response
T12490 75-77 IN denotes in
T12489 64-74 NN denotes activation
T12488 59-63 NN denotes IRF3
T12487 55-58 CC denotes and
T12486 49-54 NN denotes NF-κB
T12485 40-48 VB denotes enhanced
T12484 32-39 NN denotes display
T12483 27-31 NN denotes BMDM
T12482 17-26 JJ denotes deficient
T12481 13-16 NN denotes A20
T12480 8-12 IN denotes that
T12479 3-7 VB denotes show
T12478 0-2 PRP denotes We
R9019 T12478 T12479 arg1Of We,show
R9020 T12484 T12481 arg1Of display,A20
R9021 T12484 T12482 arg1Of display,deficient
R9022 T12484 T12483 arg1Of display,BMDM
R9023 T12484 T12485 arg1Of display,enhanced
R9024 T12485 T12479 arg2Of enhanced,show
R9025 T12485 T12480 arg1Of enhanced,that
R9026 T12486 T12487 arg1Of NF-κB,and
R9027 T12488 T12487 arg2Of IRF3,and
R9028 T12489 T12485 arg2Of activation,enhanced
R9029 T12489 T12486 arg1Of activation,NF-κB
R9030 T12489 T12488 arg1Of activation,IRF3
R9031 T12489 T12490 arg1Of activation,in
R9032 T12489 T12495 arg1Of activation,by
R9033 T12490 T12492 arg1Of in,to
R9034 T12491 T12490 arg2Of response,in
R9035 T12494 T12490 arg3Of stimulation,in
R9036 T12494 T12493 arg1Of stimulation,RIG-I
R9037 T12498 T12496 arg1Of double,synthetic
R9038 T12498 T12497 arg1Of double,LMW
R9039 T12500 T12495 arg2Of RNA,by
R9040 T12500 T12498 arg1Of RNA,double
R9041 T12500 T12499 arg1Of RNA,stranded

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11823 90-95 Protein denotes RIG-I
T11822 59-63 Protein denotes IRF3

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T14285 59-63 http://www.uniprot.org/uniprot/Q14653 denotes IRF3
T14264 13-16 http://www.uniprot.org/uniprot/P21580 denotes A20

sentences

Id Subject Object Predicate Lexical cue
T11718 0-145 Sentence denotes We show that A20 deficient BMDM display enhanced NF-κB and IRF3 activation in response to RIG-I stimulation by synthetic LMW double stranded RNA.
T172 0-145 Sentence denotes We show that A20 deficient BMDM display enhanced NF-κB and IRF3 activation in response to RIG-I stimulation by synthetic LMW double stranded RNA.

simple1

Id Subject Object Predicate Lexical cue
T11977 90-95 Protein denotes RIG-I
T11976 59-63 Protein denotes IRF3

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14591 64-74 Positive_regulation denotes activation
T14590 40-48 Positive_regulation denotes enhanced
T14564 90-95 Protein denotes RIG-I
T14563 59-63 Protein denotes IRF3
R10918 T14563 T14591 themeOf IRF3,activation
R10927 T14591 T14590 themeOf activation,enhanced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T14330 40-48 Positive_regulation denotes enhanced
T14329 64-74 Positive_regulation denotes activation
T14304 90-95 Protein denotes RIG-I
T14303 59-63 Protein denotes IRF3
R10827 T14303 T14329 themeOf IRF3,activation
R10830 T14329 T14330 themeOf activation,enhanced

DLUT931

Id Subject Object Predicate Lexical cue
T14372 78-86 Positive_regulation denotes response
T14371 40-48 Positive_regulation denotes enhanced
T14370 96-107 Positive_regulation denotes stimulation
T14369 64-74 Positive_regulation denotes activation
T14345 90-95 Protein denotes RIG-I
T14344 59-63 Protein denotes IRF3
R10847 T14344 T14369 themeOf IRF3,activation
R10848 T14369 T14371 themeOf activation,enhanced
R10849 T14345 T14370 themeOf RIG-I,stimulation
R10851 T14370 T14372 themeOf stimulation,response
R10852 T14372 T14370 themeOf response,stimulation
R10853 T14372 T14371 themeOf response,enhanced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T14741 59-74 Positive_regulation denotes IRF3 activation
T14733 90-107 Positive_regulation denotes RIG-I stimulation
T14721 49-54 Protein denotes NF-κB
T14697 90-95 Protein denotes RIG-I
T14670 8-16 Protein denotes that A20
T14621 59-63 Protein denotes IRF3
R10930 T14621 T14741 themeOf IRF3,IRF3 activation
R10947 T14697 T14733 themeOf RIG-I,RIG-I stimulation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T13629 144-145 . denotes .
T13628 141-144 NNP denotes RNA
T13627 132-140 VBD denotes stranded
T13626 125-131 JJ denotes double
T13625 121-124 NNP denotes LMW
T13624 111-120 JJ denotes synthetic
T13623 108-110 IN denotes by
T13622 96-107 NN denotes stimulation
T13621 90-95 NNP denotes RIG-I
T13620 87-89 TO denotes to
T13619 78-86 NN denotes response
T13618 75-77 IN denotes in
T13617 64-74 NN denotes activation
T13616 59-63 NNP denotes IRF3
T13615 55-58 CC denotes and
T13614 49-54 NNP denotes NF-κB
T13613 40-48 VBN denotes enhanced
T13612 32-39 NN denotes display
T13611 27-31 NNP denotes BMDM
T13610 17-26 JJ denotes deficient
T13609 13-16 CD denotes A20
T13608 8-12 IN denotes that
T13607 3-7 VBP denotes show
T13606 0-2 PRP denotes We
R10169 T13606 T13607 nsubj We,show
R10170 T13607 T13607 ROOT show,show
R10171 T13608 T13613 mark that,enhanced
R10172 T13609 T13612 nummod A20,display
R10173 T13610 T13612 amod deficient,display
R10174 T13611 T13612 compound BMDM,display
R10175 T13612 T13613 nsubj display,enhanced
R10176 T13613 T13607 ccomp enhanced,show
R10177 T13614 T13613 dobj NF-κB,enhanced
R10178 T13615 T13614 cc and,NF-κB
R10179 T13616 T13614 conj IRF3,NF-κB
R10180 T13617 T13627 nsubj activation,stranded
R10181 T13618 T13617 prep in,activation
R10182 T13619 T13618 pobj response,in
R10183 T13620 T13619 prep to,response
R10184 T13621 T13622 compound RIG-I,stimulation
R10185 T13622 T13620 pobj stimulation,to
R10186 T13623 T13622 prep by,stimulation
R10187 T13624 T13626 amod synthetic,double
R10188 T13625 T13626 compound LMW,double
R10189 T13626 T13623 pobj double,by
R10190 T13627 T13613 conj stranded,enhanced
R10191 T13628 T13627 dobj RNA,stranded
R10192 T13629 T13607 punct .,show

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T14445 40-48 Positive_regulation denotes enhanced
T14444 40-48 Positive_regulation denotes enhanced
T14443 64-74 Positive_regulation denotes activation
T14442 64-74 Positive_regulation denotes activation
T14441 90-95 Protein denotes RIG-I
T14440 59-63 Protein denotes IRF3
T14439 49-54 Protein denotes NF-κB
R10876 T14439 T14442 themeOf NF-κB,activation
R10877 T14440 T14443 themeOf IRF3,activation
R10878 T14442 T14444 themeOf activation,enhanced
R10879 T14443 T14445 themeOf activation,enhanced

testone

Id Subject Object Predicate Lexical cue
T11603 17-26 Negative_regulation denotes deficient
T11575 90-95 Protein denotes RIG-I
T11574 59-63 Protein denotes IRF3