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PMC:3291650 / 27169-27374 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T11654 168-178 Gene_expression denotes production
T11653 162-167 Protein denotes MCP-1
T11652 38-45 Negative_regulation denotes absence
T11651 22-30 Regulation denotes affected
T11650 0-5 Protein denotes MCP-1
T11620 162-167 Protein denotes MCP-1
T11619 0-5 Protein denotes MCP-1
R8470 T11650 T11651 themeOf MCP-1,affected
R8471 T11653 T11654 themeOf MCP-1,production

2_test

Id Subject Object Predicate Lexical cue
22396652-11748284-98461871 201-203 11748284 denotes 73

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12327 200-201 -LRB- denotes [
T12326 190-199 NN denotes infection
T12325 186-189 NN denotes IAV
T12324 179-185 IN denotes during
T12323 168-178 NN denotes production
T12322 162-167 NN denotes MCP-1
T12321 159-161 IN denotes of
T12320 152-158 NN denotes source
T12319 144-151 JJ denotes primary
T12318 140-143 DT denotes the
T12317 136-139 VB denotes are
T12316 130-135 NN denotes cells
T12315 119-129 JJ denotes epithelial
T12314 112-118 NN denotes airway
T12313 107-111 IN denotes that
T12312 100-106 NN denotes notion
T12311 96-99 DT denotes the
T12310 91-95 IN denotes with
T12309 80-90 JJ denotes consistent
T12308 77-79 VB denotes is
T12307 71-76 WDT denotes which
T12306 69-70 -COMMA- denotes ,
T12305 64-69 NN denotes cells
T12304 56-63 JJ denotes myeloid
T12303 53-55 IN denotes in
T12302 49-52 NN denotes A20
T12301 46-48 IN denotes of
T12300 38-45 NN denotes absence
T12299 34-37 DT denotes the
T12298 31-33 IN denotes by
T12297 22-30 VB denotes affected
T12296 18-21 RB denotes not
T12295 13-17 VB denotes were
T12294 6-12 NN denotes levels
T12293 0-5 NN denotes MCP-1
T12329 203-204 -RRB- denotes ]
T12328 201-203 CD denotes 73
R8827 T12294 T12293 arg1Of levels,MCP-1
R8828 T12294 T12295 arg1Of levels,were
R8829 T12294 T12297 arg2Of levels,affected
R8830 T12297 T12295 arg2Of affected,were
R8831 T12297 T12296 arg1Of affected,not
R8832 T12300 T12297 arg1Of absence,affected
R8833 T12300 T12298 arg2Of absence,by
R8834 T12300 T12299 arg1Of absence,the
R8835 T12300 T12301 arg1Of absence,of
R8836 T12300 T12303 arg1Of absence,in
R8837 T12300 T12306 arg1Of absence,","
R8838 T12300 T12307 arg1Of absence,which
R8839 T12300 T12308 arg1Of absence,is
R8840 T12300 T12309 arg1Of absence,consistent
R8841 T12302 T12301 arg2Of A20,of
R8842 T12305 T12303 arg2Of cells,in
R8843 T12305 T12304 arg1Of cells,myeloid
R8844 T12309 T12308 arg2Of consistent,is
R8845 T12309 T12310 arg1Of consistent,with
R8846 T12312 T12310 arg2Of notion,with
R8847 T12312 T12311 arg1Of notion,the
R8848 T12316 T12314 arg1Of cells,airway
R8849 T12316 T12315 arg1Of cells,epithelial
R8850 T12316 T12317 arg1Of cells,are
R8851 T12317 T12312 arg2Of are,notion
R8852 T12317 T12313 arg1Of are,that
R8853 T12317 T12327 arg1Of are,[
R8854 T12320 T12317 arg2Of source,are
R8855 T12320 T12318 arg1Of source,the
R8856 T12320 T12319 arg1Of source,primary
R8857 T12320 T12321 arg1Of source,of
R8858 T12320 T12324 arg1Of source,during
R8859 T12323 T12321 arg2Of production,of
R8860 T12323 T12322 arg1Of production,MCP-1
R8861 T12326 T12324 arg2Of infection,during
R8862 T12326 T12325 arg1Of infection,IAV
R8863 T12328 T12327 arg2Of 73,[
R8864 T12329 T12327 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11821 162-167 Protein denotes MCP-1
T11820 0-5 Protein denotes MCP-1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T14262 49-52 http://www.uniprot.org/uniprot/P21580 denotes A20

GO-BP

Id Subject Object Predicate Lexical cue
T11882 162-178 http://purl.obolibrary.org/obo/GO_0071605 denotes MCP-1 production
T11881 162-178 http://purl.obolibrary.org/obo/GO_0071637 denotes MCP-1 production
T11879 162-165 http://purl.obolibrary.org/obo/GO_0004298 denotes MCP
T11878 0-3 http://purl.obolibrary.org/obo/GO_0004298 denotes MCP

GO-MF

Id Subject Object Predicate Lexical cue
T11913 162-165 http://purl.obolibrary.org/obo/GO_0004298 denotes MCP
T11912 0-3 http://purl.obolibrary.org/obo/GO_0004298 denotes MCP

GO-CC

Id Subject Object Predicate Lexical cue
T11931 130-135 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T11930 64-69 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T11713 0-205 Sentence denotes MCP-1 levels were not affected by the absence of A20 in myeloid cells, which is consistent with the notion that airway epithelial cells are the primary source of MCP-1 production during IAV infection [73].
T167 0-205 Sentence denotes MCP-1 levels were not affected by the absence of A20 in myeloid cells, which is consistent with the notion that airway epithelial cells are the primary source of MCP-1 production during IAV infection [73].

simple1

Id Subject Object Predicate Lexical cue
T11975 162-167 Protein denotes MCP-1
T11974 0-5 Protein denotes MCP-1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14589 168-178 Gene_expression denotes production
T14588 22-30 Regulation denotes affected
T14562 162-167 Protein denotes MCP-1
T14561 0-5 Protein denotes MCP-1
R10916 T14561 T14588 themeOf MCP-1,affected
R10917 T14562 T14589 themeOf MCP-1,production

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T14328 22-30 Regulation denotes affected
T14327 168-178 Gene_expression denotes production
T14302 162-167 Protein denotes MCP-1
T14301 0-5 Protein denotes MCP-1
R10822 T14301 T14328 themeOf MCP-1,affected
R10826 T14302 T14327 themeOf MCP-1,production

DLUT931

Id Subject Object Predicate Lexical cue
T14368 168-178 Gene_expression denotes production
T14367 22-30 Regulation denotes affected
T14343 162-167 Protein denotes MCP-1
T14342 0-5 Protein denotes MCP-1
R10845 T14342 T14367 themeOf MCP-1,affected
R10846 T14343 T14368 themeOf MCP-1,production

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T14761 159-178 Gene_expression denotes of MCP-1 production
T14720 56-69 Entity denotes myeloid cells
T14700 0-5 Protein denotes MCP-1
T14693 112-135 Entity denotes airway epithelial cells
T14689 46-52 Protein denotes of A20
T14604 162-167 Protein denotes MCP-1
R10924 T14604 T14761 themeOf MCP-1,of MCP-1 production

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T13452 204-205 . denotes .
T13451 203-204 NNP denotes ]
T13450 201-203 CD denotes 73
T13449 200-201 NNP denotes [
T13448 190-199 NN denotes infection
T13447 186-189 NNP denotes IAV
T13446 179-185 IN denotes during
T13445 168-178 NN denotes production
T13444 162-167 JJ denotes MCP-1
T13443 159-161 IN denotes of
T13442 152-158 NN denotes source
T13441 144-151 JJ denotes primary
T13440 140-143 DT denotes the
T13439 136-139 VBP denotes are
T13438 130-135 NNS denotes cells
T13437 119-129 JJ denotes epithelial
T13436 112-118 NN denotes airway
T13435 107-111 IN denotes that
T13434 100-106 NN denotes notion
T13433 96-99 DT denotes the
T13432 91-95 IN denotes with
T13431 80-90 JJ denotes consistent
T13430 77-79 VBZ denotes is
T13429 71-76 WDT denotes which
T13428 69-70 , denotes ,
T13427 64-69 NNS denotes cells
T13426 56-63 JJ denotes myeloid
T13425 53-55 IN denotes in
T13424 49-52 NNP denotes A20
T13423 46-48 IN denotes of
T13422 38-45 NN denotes absence
T13421 34-37 DT denotes the
T13420 31-33 IN denotes by
T13419 22-30 VBN denotes affected
T13418 18-21 RB denotes not
T13417 13-17 VBD denotes were
T13416 6-12 NNS denotes levels
T13415 0-5 NN denotes MCP-1
R9983 T13420 T13419 agent by,affected
R9984 T13421 T13422 det the,absence
R9985 T13422 T13420 pobj absence,by
R9986 T13423 T13422 prep of,absence
R9987 T13424 T13423 pobj A20,of
R9988 T13425 T13422 prep in,absence
R9989 T13426 T13427 amod myeloid,cells
R9990 T13427 T13425 pobj cells,in
R9991 T13428 T13422 punct ",",absence
R9992 T13429 T13430 nsubj which,is
R9993 T13430 T13422 relcl is,absence
R9994 T13431 T13430 acomp consistent,is
R9995 T13432 T13431 prep with,consistent
R9996 T13433 T13434 det the,notion
R9997 T13434 T13432 pobj notion,with
R9998 T13435 T13439 mark that,are
R9999 T13436 T13438 amod airway,cells
R10000 T13437 T13438 amod epithelial,cells
R10001 T13438 T13439 nsubj cells,are
R10002 T13439 T13434 acl are,notion
R10003 T13440 T13442 det the,source
R10004 T13441 T13442 amod primary,source
R10005 T13442 T13439 attr source,are
R10006 T13443 T13442 prep of,source
R10007 T13444 T13445 amod MCP-1,production
R10008 T13445 T13443 pobj production,of
R10009 T13446 T13442 prep during,source
R10010 T13447 T13448 compound IAV,infection
R10011 T13448 T13446 pobj infection,during
R10012 T13449 T13451 nmod [,]
R10013 T13450 T13451 nummod 73,]
R10014 T13451 T13448 npadvmod ],infection
R10015 T13452 T13419 punct .,affected
R9978 T13415 T13416 compound MCP-1,levels
R9979 T13416 T13419 nsubjpass levels,affected
R9980 T13417 T13419 auxpass were,affected
R9981 T13418 T13419 neg not,affected
R9982 T13419 T13419 ROOT affected,affected

testone

Id Subject Object Predicate Lexical cue
T11599 168-178 Gene_expression denotes production
T11598 38-45 Negative_regulation denotes absence
T11573 162-167 Protein denotes MCP-1
T11572 0-5 Protein denotes MCP-1
R8465 T11573 T11599 themeOf MCP-1,production